mRNA_H-paniculata_contig30653.8305.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30653.8305.1
Unique NamemRNA_H-paniculata_contig30653.8305.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 6.760e-32
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y+HK IE RWQ HWE +GTFKTP RTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR
Sbjct:   19 YNHKAIEARWQQHWEEKGTFKTPERTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 80
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7S0DTQ0_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTQ0_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 1.280e-27
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            YD  E+E RWQ  W  E TF TP+R++ +PKK++LDMFPYPSGSGLHVGHPEGYTASDVMAR
Sbjct:   97 YDPSEVEPRWQQRWADEKTFATPIRSQDKPKKYILDMFPYPSGSGLHVGHPEGYTASDVMAR 158
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7S2XSK2_9STRA (Leucine--tRNA ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSK2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.070e-25
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y   EIE RWQA W+ E TFKTP+R   +PKK+VLDMFPYPSG+GLHVGHPEGYTASDVMAR
Sbjct:   84 YPFAEIEKRWQAKWQDEQTFKTPIRNPDKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMAR 145
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7S0LTP1_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTP1_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 2.630e-25
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            YDH  +EG+WQA+WE   TF T  R EG+ KK+VLDMFPYPSG+GLHVGHPEGYTASD+MAR
Sbjct:   34 YDHAVVEGKWQAYWEESRTFAT-RRREGKEKKYVLDMFPYPSGAGLHVGHPEGYTASDIMAR 94
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7S2H5H8_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H5H8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.330e-25
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y   ++E +WQA W  E TF+TP+R   +PKK+VLDMFPYPSG+GLHVGHPEGYTASD+MAR
Sbjct:   65 YPFTKVEAKWQARWAEEKTFQTPVRDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDIMAR 126
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7C2NWB0_9GAMM (Leucine--tRNA ligase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2NWB0_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 9.510e-25
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTE-GRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y  KEIE +WQAHWES+ TF+ P   +  +PK +VLDMFPYPSG+GLHVGHPEGYTASD++AR
Sbjct:    4 YPFKEIEAKWQAHWESQATFRVPKTVDTSKPKYYVLDMFPYPSGAGLHVGHPEGYTASDIVAR 66
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BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A1E7FAE0_9STRA (Leucine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAE0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.790e-25
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y   ++E +WQA+WE   TFKTP+R   +PKK+VLDMFPYPSG+GLHVGHPEGYTASD+MAR
Sbjct:   52 YPFAQVETKWQAYWEENNTFKTPVRDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDIMAR 113
[Close]
BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7S2YMF4_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMF4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.400e-24
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y   E+E +WQ +W+   TFKTP R   +PKK+VLDMFPYPSG+GLHVGHPEGYTASDVMAR
Sbjct:   70 YPFAEVEPKWQKYWKDNHTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMAR 131
[Close]
BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A448Z2U8_9STRA (Leucine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2U8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.830e-24
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y  +E+E +WQ +WE   TFKTP R   +PKK+VLDMFPYPSG+GLHVGHPEGYTASDVMAR
Sbjct:   67 YPFQEVEPKWQKYWEENNTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMAR 128
[Close]
BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Match: A0A7S4AJT1_9STRA (Leucine--tRNA ligase n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJT1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.400e-24
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 186
            Y   E+E +WQ +WE   TFKTP R   +PKK+VLDMFPYPSG+GLHVGHPEGYTASDVMAR
Sbjct:   67 YPFAEVEPKWQKYWEENNTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMAR 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30653.8305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G858_ECTSI6.760e-3288.71Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0DTQ0_9EUKA1.280e-2772.58Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2XSK2_9STRA2.070e-2575.81Leucine--tRNA ligase n=1 Tax=Attheya septentrional... [more]
A0A7S0LTP1_9EUKA2.630e-2572.58Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2H5H8_9STRA7.330e-2567.74Leucine--tRNA ligase (Fragment) n=1 Tax=Helicothec... [more]
A0A7C2NWB0_9GAMM9.510e-2568.25Leucine--tRNA ligase (Fragment) n=1 Tax=Gammaprote... [more]
A0A1E7FAE0_9STRA9.790e-2569.35Leucine--tRNA ligase n=1 Tax=Fragilariopsis cylind... [more]
A0A7S2YMF4_9STRA1.400e-2469.35Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora... [more]
A0A448Z2U8_9STRA1.830e-2470.97Leucine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S4AJT1_9STRA3.400e-2470.97Leucine--tRNA ligase n=2 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30653contigH-paniculata_contig30653:2355..2540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score101.3
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog203123.OEOE_0839
Preferred nameleuS
KEGG rclassRC00055,RC00523
KEGG koko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs1TP0Y@1239,4AWVV@81850,4HAG1@91061,COG0495@1,COG0495@2
EC6.1.1.4
COG Functional cat.J
Best tax levelLeuconostocaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.618574-CDS-H-paniculata_contig30653:2354..25401622929942.618574-CDS-H-paniculata_contig30653:2354..2540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30653 2355..2540 +
1691481079.7467477-CDS-H-paniculata_contig30653:2354..25401691481079.7467477-CDS-H-paniculata_contig30653:2354..2540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30653 2355..2540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30653.8305.1prot_H-paniculata_contig30653.8305.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30653 2355..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30653.8305.1

>prot_H-paniculata_contig30653.8305.1 ID=prot_H-paniculata_contig30653.8305.1|Name=mRNA_H-paniculata_contig30653.8305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
YDHKEIEGRWQAHWESEGTFKTPMRTEGRPKKFVLDMFPYPSGSGLHVGH
PEGYTASDVMAR
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mRNA from alignment at H-paniculata_contig30653:2355..2540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30653.8305.1 ID=mRNA_H-paniculata_contig30653.8305.1|Name=mRNA_H-paniculata_contig30653.8305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig30653:2355..2540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACCACAAGGAAATCGAGGGACGGTGGCAAGCGCATTGGGAGTCAGA
GGGCACCTTTAAGACGCCCATGCGTACTGAGGGACGGCCCAAGAAGTTCG
TGCTGGACATGTTCCCATACCCATCCGGATCTGGCCTGCACGTGGGGCAT
CCGGAGGGCTACACGGCGTCGGACGTGATGGCAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30653:2355..2540+

>mRNA_H-paniculata_contig30653.8305.1 ID=mRNA_H-paniculata_contig30653.8305.1|Name=mRNA_H-paniculata_contig30653.8305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig30653:2355..2540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACCACAAGGAAATCGAGGGACGGTGGCAAGCGCATTGGGAGTCAGA
GGGCACCTTTAAGACGCCCATGCGTACTGAGGGACGGCCCAAGAAGTTCG
TGCTGGACATGTTCCCATACCCATCCGGATCTGGCCTGCACGTGGGGCAT
CCGGAGGGCTACACGGCGTCGGACGTGATGGCAAGGTATGACCACAAGGA
AATCGAGGGACGGTGGCAAGCGCATTGGGAGTCAGAGGGCACCTTTAAGA
CGCCCATGCGTACTGAGGGACGGCCCAAGAAGTTCGTGCTGGACATGTTC
CCATACCCATCCGGATCTGGCCTGCACGTGGGGCATCCGGAGGGCTACAC
GGCGTCGGACGTGATGGCAAGG
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