mRNA_H-paniculata_contig30626.8300.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30626.8300.1
Unique NamemRNA_H-paniculata_contig30626.8300.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30626.8300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30626contigH-paniculata_contig30626:1977..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size349
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.024158-CDS-H-paniculata_contig30626:1976..23061622929942.024158-CDS-H-paniculata_contig30626:1976..2306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30626 1977..2306 +
1691481079.5292895-CDS-H-paniculata_contig30626:1976..23061691481079.5292895-CDS-H-paniculata_contig30626:1976..2306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30626 1977..2306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.0440724-UTR-H-paniculata_contig30626:2306..23231622929942.0440724-UTR-H-paniculata_contig30626:2306..2323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30626 2307..2323 +
1691481079.5401607-UTR-H-paniculata_contig30626:2306..23231691481079.5401607-UTR-H-paniculata_contig30626:2306..2323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30626 2307..2323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30626.8300.1prot_H-paniculata_contig30626.8300.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30626 1977..2306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30626.8300.1

>prot_H-paniculata_contig30626.8300.1 ID=prot_H-paniculata_contig30626.8300.1|Name=mRNA_H-paniculata_contig30626.8300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
PSTADSPPSSISLPLCPAGCPLLLLLLLALVRTHGGRGLCEVVAPENRGL
LRAIVASPSARCAAAAAATVPISFGRQISASLTTPGTTGAAAESTLCCSW
WPDASWSSV*
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mRNA from alignment at H-paniculata_contig30626:1977..2323+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30626.8300.1 ID=mRNA_H-paniculata_contig30626.8300.1|Name=mRNA_H-paniculata_contig30626.8300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=347bp|location=Sequence derived from alignment at H-paniculata_contig30626:1977..2323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGCACCGCCGACTCCCCCCCCTCCAGCATCTCTTTGCCCTTGTGCCC
CGCCGGCTGCCCCCTGCTGCTGCTGCTGCTGTTGGCCTTGGTACGCACCC
ATGGAGGAAGGGGCTTGTGCGAAGTCGTAGCCCCTGAAAATAGGGGCCTG
TTGCGCGCCATTGTTGCCTCCCCCAGCGCCCGCTGCGCCGCCGCCGCCGC
GGCTACCGTCCCTATCTCGTTTGGGCGTCAGATTTCGGCCTCTTTGACCA
CCCCCGGCACCACCGGCGCCGCCGCCGAGTCTACCTTGTGTTGCTCCTGG
TGGCCGGACGCCTCCTGGTCCTCTGTCTAGCCCGCCTGTGCCTGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30626:1977..2323+

>mRNA_H-paniculata_contig30626.8300.1 ID=mRNA_H-paniculata_contig30626.8300.1|Name=mRNA_H-paniculata_contig30626.8300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig30626:1977..2323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGCACCGCCGACTCCCCCCCCTCCAGCATCTCTTTGCCCTTGTGCCC
CGCCGGCTGCCCCCTGCTGCTGCTGCTGCTGTTGGCCTTGGTACGCACCC
ATGGAGGAAGGGGCTTGTGCGAAGTCGTAGCCCCTGAAAATAGGGGCCTG
TTGCGCGCCATTGTTGCCTCCCCCAGCGCCCGCTGCGCCGCCGCCGCCGC
GGCTACCGTCCCTATCTCGTTTGGGCGTCAGATTTCGGCCTCTTTGACCA
CCCCCGGCACCACCGGCGCCGCCGCCGAGTCTACCTTGTGTTGCTCCTGG
TGGCCGGACGCCTCCTGGTCCTCTGTCTAGCCCAGCACCGCCGACTCCCC
CCCCTCCAGCATCTCTTTGCCCTTGTGCCCCGCCGGCTGCCCCCTGCTGC
TGCTGCTGCTGTTGGCCTTGGTACGCACCCATGGAGGAAGGGGCTTGTGC
GAAGTCGTAGCCCCTGAAAATAGGGGCCTGTTGCGCGCCATTGTTGCCTC
CCCCAGCGCCCGCTGCGCCGCCGCCGCCGCGGCTACCGTCCCTATCTCGT
TTGGGCGTCAGATTTCGGCCTCTTTGACCACCCCCGGCACCACCGGCGCC
GCCGCCGAGTCTACCTTGTGTTGCTCCTGGTGGCCGGACGCCTCCTGGTC
CTCTGTCTAG
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