mRNA_H-paniculata_contig30616.8298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30616.8298.1
Unique NamemRNA_H-paniculata_contig30616.8298.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30616.8298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30616contigH-paniculata_contig30616:585..1174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30616.8298.1prot_H-paniculata_contig30616.8298.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30616 627..1049 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.5824108-UTR-H-paniculata_contig30616:584..6261622929941.5824108-UTR-H-paniculata_contig30616:584..626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30616 585..626 +
1691481079.365843-UTR-H-paniculata_contig30616:584..6261691481079.365843-UTR-H-paniculata_contig30616:584..626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30616 585..626 +
1622929941.6229248-UTR-H-paniculata_contig30616:1049..11741622929941.6229248-UTR-H-paniculata_contig30616:1049..1174Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30616 1050..1174 +
1691481079.3863258-UTR-H-paniculata_contig30616:1049..11741691481079.3863258-UTR-H-paniculata_contig30616:1049..1174Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30616 1050..1174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.6016564-CDS-H-paniculata_contig30616:626..10491622929941.6016564-CDS-H-paniculata_contig30616:626..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30616 627..1049 +
1691481079.3775156-CDS-H-paniculata_contig30616:626..10491691481079.3775156-CDS-H-paniculata_contig30616:626..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30616 627..1049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30616.8298.1

>prot_H-paniculata_contig30616.8298.1 ID=prot_H-paniculata_contig30616.8298.1|Name=mRNA_H-paniculata_contig30616.8298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MDFSCCCSCRSCSAITCSDCISAVTSSVWVGNFARTVCTVFLSASPVIPL
LLVRCNQKPGEGMAPSSSLLSLGEGDDVRTELDDVLGLGVAQNAEGKRVF
EGAMSSFPPTSCPPSFLMLLLVKPQRDREDFPPLHTLRET*
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mRNA from alignment at H-paniculata_contig30616:585..1174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30616.8298.1 ID=mRNA_H-paniculata_contig30616.8298.1|Name=mRNA_H-paniculata_contig30616.8298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=590bp|location=Sequence derived from alignment at H-paniculata_contig30616:585..1174+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAATACCCCCCGCTGAAGACGACAAAACAAAATCAGTCCATATGGACTT
CTCCTGCTGCTGTTCCTGCCGGTCATGTAGCGCAATCACCTGTTCAGATT
GTATTTCAGCAGTAACCTCCTCTGTTTGGGTCGGTAATTTTGCCCGCACC
GTTTGCACTGTATTTCTCTCAGCATCCCCTGTCATCCCTCTTCTGCTAGT
CCGATGCAACCAGAAGCCGGGGGAGGGCATGGCACCCTCGTCTTCCTTGC
TGAGCCTCGGGGAGGGGGACGACGTGCGTACCGAGTTGGATGACGTGCTG
GGCTTGGGTGTAGCGCAGAACGCAGAGGGCAAACGGGTGTTTGAAGGGGC
CATGAGTTCCTTCCCTCCTACCTCGTGCCCACCTTCATTCCTTATGCTGC
TTCTAGTGAAGCCCCAGCGCGACAGGGAGGACTTCCCACCACTCCACACG
CTTCGCGAAACCTGACTACTTTTTTCGTGATTACCTGGCTGCTCTGCATG
CTCTAGGGGCTGCTGACGCATTCCCATCTGGTTTTTTCTTCTGTCCGCTG
TCCCTCTCATACAAGAAAAAACGACGTTATACGTAATCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig30616:585..1174+

>mRNA_H-paniculata_contig30616.8298.1 ID=mRNA_H-paniculata_contig30616.8298.1|Name=mRNA_H-paniculata_contig30616.8298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig30616:585..1174+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTCTCCTGCTGCTGTTCCTGCCGGTCATGTAGCGCAATCACCTG
TTCAGATTGTATTTCAGCAGTAACCTCCTCTGTTTGGGTCGGTAATTTTG
CCCGCACCGTTTGCACTGTATTTCTCTCAGCATCCCCTGTCATCCCTCTT
CTGCTAGTCCGATGCAACCAGAAGCCGGGGGAGGGCATGGCACCCTCGTC
TTCCTTGCTGAGCCTCGGGGAGGGGGACGACGTGCGTACCGAGTTGGATG
ACGTGCTGGGCTTGGGTGTAGCGCAGAACGCAGAGGGCAAACGGGTGTTT
GAAGGGGCCATGAGTTCCTTCCCTCCTACCTCGTGCCCACCTTCATTCCT
TATGCTGCTTCTAGTGAAGCCCCAGCGCGACAGGGAGGACTTCCCACCAC
TCCACACGCTTCGCGAAACCTGAATGGACTTCTCCTGCTGCTGTTCCTGC
CGGTCATGTAGCGCAATCACCTGTTCAGATTGTATTTCAGCAGTAACCTC
CTCTGTTTGGGTCGGTAATTTTGCCCGCACCGTTTGCACTGTATTTCTCT
CAGCATCCCCTGTCATCCCTCTTCTGCTAGTCCGATGCAACCAGAAGCCG
GGGGAGGGCATGGCACCCTCGTCTTCCTTGCTGAGCCTCGGGGAGGGGGA
CGACGTGCGTACCGAGTTGGATGACGTGCTGGGCTTGGGTGTAGCGCAGA
ACGCAGAGGGCAAACGGGTGTTTGAAGGGGCCATGAGTTCCTTCCCTCCT
ACCTCGTGCCCACCTTCATTCCTTATGCTGCTTCTAGTGAAGCCCCAGCG
CGACAGGGAGGACTTCCCACCACTCCACACGCTTCGCGAAACCTGA
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