mRNA_H-paniculata_contig3041.8240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI) HSP 1 Score: 894 bits (2309), Expect = 2.950e-299 Identity = 444/561 (79.14%), Postives = 497/561 (88.59%), Query Frame = 1
Query: 1 KVRVMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIKAFAKSSRPHVVCVSTSAGQPCRFMMDLLVDRRSGQNGEPRRGAIPDALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQVDDDYFPIVESAMEDSREALQRFCSQ-DSTADPRLPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARVFGATGWVRPHTLPRLDNKFD 1680
+VRV+GI+VS+D RE+SWA A+D SGSVLDHLQIP RD RA K+KAF KS+RPHVVCVSTSAGQ R+MMD LVDRRSGQNGEP+ G + DA REY+ ERG ++DD+DEE+ WK S+A +KDDVA +FARS+RGEKEF DF+VNQR AV LARYLQDPLV+ F MWT+MDSSG+FG E FSL+LH LQD+VPP QLL+VW+HRMMDAVS VGVDINHAAEHEHA+GVLQFVPGLGPRKA +LRER+G VLGG+VPSRKALLSSQ+LKSLVYTNAAGFLR+RERGKLAE+L+GQ+ DPFDDTRVHPECYNTQDWAQRICANALDVQV+DDYFPIVESAM+DSREALQR C Q +S DPR+PP NLNDSVNQLDL+AYADEL+RQGEGKRA QLDSIVEEIRYPYRDRR PY+ P EDELFEWLTGETDATLREGVLVPVR+MRHN+ GV+V+LEGGPGLFGFVP DYVTDDVLP DPITGQ A L VVK NQLMEAAIIKVDKGRFELKLSLRKSDT P+PDKWD P+GA RVFGA+GW RP +LPRLD KF+
Sbjct: 984 QVRVVGIFVSSDSREESWAAAIDPSGSVLDHLQIPRSRDLRAKKLKAFIKSNRPHVVCVSTSAGQASRYMMDTLVDRRSGQNGEPKTGVLADAHREYQRERG-DYDDQDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVE----FAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQL-DPFDDTRVHPECYNTQDWAQRICANALDVQVEDDYFPIVESAMDDSREALQRLCQQGESGVDPRMPPNNLNDSVNQLDLTAYADELQRQGEGKRAQQLDSIVEEIRYPYRDRRMPYSTPGEDELFEWLTGETDATLREGVLVPVRIMRHNDAGVRVRLEGGPGLFGFVPGDYVTDDVLPPDPITGQKADLKGVVKENQLMEAAIIKVDKGRFELKLSLRKSDTMPDPDKWDAPLGATRVFGASGWNRPASLPRLDEKFN 1538
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A6H5L9M6_9PHAE (S1 motif domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M6_9PHAE) HSP 1 Score: 743 bits (1919), Expect = 6.930e-255 Identity = 387/544 (71.14%), Postives = 434/544 (79.78%), Query Frame = 1
Query: 1 KVRVMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIKAFAKSSRPHVVCVSTSAGQPCRFMMDLLVDRRSGQNGEPRRGAIPDALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQVDDDYFPIVESAMEDSREALQRFCSQDSTADPRLPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYR--------------DRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDK 1590
+VRV+GI+VS+D RE+SWA A+D SGSVLDHLQIP RD RA K+KAF K++RPHVVCVSTSAGQ R+MMD LVDRRSGQ+GEP+ G + DA REY+ ERG ++DDEDEE+ WK S+A +KDDVA +FARS+RGEKEF DF+VNQR AVGLARYLQDPLV+ F MWT+MDSSG+FG E FSL+LHPLQD+VPP QLL+VW+HRMMDAVS VGVDINHAAEHEHA+G+LQFVPGLGPRKA +LRER+G VLGG+VPSRKALLSSQ+LKSLVYTNAAGFLR+RERGKLAE+L+GQ+ DPFDDTRVHPECYNTQDWAQRICANALDVQ VNQLDL+AYADEL+RQGEGKRA QLDSIVEEIRYPYR DRR PY+ P EDELFEWLTGETDATLREGVLVPVR+MRHN+ GV+V+LEGGPGLFGFVP DYVTDDVLP DPITGQ VVK NQLMEAAIIKVDK RFELKLSLRKSDT P+PDK
Sbjct: 27 QVRVVGIFVSSDSREESWAAAIDPSGSVLDHLQIPRSRDLRAKKLKAFIKANRPHVVCVSTSAGQASRYMMDTLVDRRSGQHGEPKTGVLADAHREYQRERG-DYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVGLARYLQDPLVE----FAGMWTTMDSSGNFGHEMFSLRLHPLQDQVPPQQLLKVWTHRMMDAVSAVGVDINHAAEHEHAVGLLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQL-DPFDDTRVHPECYNTQDWAQRICANALDVQ------------------------------------------VNQLDLTAYADELQRQGEGKRAQQLDSIVEEIRYPYRHGNDEMINQMVVHVDRRMPYSTPGEDELFEWLTGETDATLREGVLVPVRIMRHNDAGVRVRLEGGPGLFGFVPGDYVTDDVLPPDPITGQ-----GVVKENQLMEAAIIKVDKARFELKLSLRKSDTMPDPDK 517
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A836C842_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C842_9STRA) HSP 1 Score: 494 bits (1272), Expect = 1.960e-151 Identity = 325/901 (36.07%), Postives = 442/901 (49.06%), Query Frame = 1
Query: 151 SSRPHVVCVSTSAGQPCRFMMDLLVDRRSGQNGEPRRGAIPDALREYKDERGGE----------------------FD-----DEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDS----------------------------------SGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQVDDDYFPIVE----------------------------SAMEDSREALQRFCSQDSTADPRLPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEG-GPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARVFGATGWVRPHTLPRLDNKFD-------------------AMERM-----RGAASASAREYNVRFPRSIMHPQYKNFTHVEAEKYLTENSDGRGEALIRPSSKGADHLSLTWMWMEGEFMHTD-----IQELGKQ--------------------------AGSMLAPRLK-------------------------IRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFICRRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTNAPMLARNSRSSSSRK 2343
+S P + +G+P M ++ R R+G IP+AL +++ R G FD D+D + W ++DDVA IFA S RG +EF + N R+AV LAR +Q+PL + + +MWTSM+S SG FG E SL+LHPLQ EV QLLR R++DAV++VGVDIN A E EH G+LQFV GLGPRKAA LR I LGG++ SR+ LL +LL YTNAA FLR+R+RG+L ER D ++PFDDTR+H ECY WA++ICANALDV S M+DSRE L+ +D P P L D + +LDL +A ELERQG GKR +QL+++ +EIR+PYR+RR+P+ S+D++FEW+TGE DATLR G++V V H GV+ +EG L GF+P D + DD LP D A L + N + A I + K RFE++LSLR+SDTQ NP W T W RP +LP +D +FD A R+ RG + + + F RSI+HP ++N T EAE L ++ G+ +IRPSSK D L++TWMW GEF H + + E+ + MLA R+ GEEYE LDEI++R +A ND V ++LA KY+ +EVE L+ K P+ IPY R G+PGY + Y+P S++ E++EVT +G+ + + +T+PEL+ WFK N L RS K
Sbjct: 115 ASTPSNHLIKYRSGEPSMLMTNIACALR-------RQGLIPEALDQWRRGRSGARGRNKPKRRAGGSGYGSDDSEGFDSDNDMDDDFDGRDWTTCEAHLIRDDVARIFATSERGRQEFSEAHENLRSAVSLARMMQEPLAE----YTNMWTSMESFLHETFKYYCSTMCPHVFAPPRTLLPXXXXXRGSSGEFGHEMLSLRLHPLQGEVTKGQLLRALEQRLIDAVNEVGVDINMACEKEHMRGMLQFVAGLGPRKAAALRTGISQSLGGVINSRRQLLDRKLLGPSTYTNAASFLRIRKRGRLEERDD---INPFDDTRIHTECYIKHHWARQICANALDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIMDDSREVLRATLDRDPDWRPENPESELKDKLEELDLVEFAGELERQGLGKRRMQLEAVKDEIRFPYRERRRPFQRASDDDVFEWITGEDDATLRPGMVVTCSVSGHTRGGVRATVEGLSRALLGFIPMDKLQDDPLPPD------ADLALMFPRNSIRSAVIADIRKPRFEVQLSLRRSDTQQNPAAW-----------GTQWRRPMSLPPIDREFDHDKCQREWAERLAETQALLAQVRLQDVAQRGGTGGAPPKGSRIFQRSIVHPNFRNVTFQEAEAKLKAGAEV-GDVIIRPSSKSRDMLTITWMWQPGEFKHIEEEYESLDEIMARYIAPLNXXXXXXXXXXXXXXXXXXLGVAEMLAHRINPLTLIMNKTECSHFVAFHMCAGGPITGGEEYESLDEIMARYIAPLNDGVAEMLAHPKYKDLPRKEVEDLVMEMKRSAPSSIPYLFARHGSPGYFVLFYIPGKSVRSELIEVTDKGFKIRTKELRTVPELVNWFKKNFNNLPPMPRSQQCSK 983
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: K0RC99_THAOC (S1 motif domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RC99_THAOC) HSP 1 Score: 394 bits (1012), Expect = 9.840e-114 Identity = 264/838 (31.50%), Postives = 416/838 (49.64%), Query Frame = 1
Query: 4 VRVMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGR--DARAAKIKAFAKSSRPHVVCVSTSAGQPCRFMMDLLVD----------RRSGQNGEPRRGAIPDALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDV-----QVDDDYFPIVESAMEDSREALQRFCSQDSTA---------------DPRL-PPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARVF-----GATGWVRPHTLPRLDNKFDAMERMRGAASAS----AREYNVRFPRS-------IMHPQYKNFTHVEAEKYLTENSDGR-GEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFIC-RRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTNA-------PMLARNSRSSSSRK 2343
+ V+G+ S+D RE ++ AV SG V DH+ +P G D+ +I F +SRP V V +S G R L + R Q + + ++ G D +D+ED WK +V + D+VA +F RS RG+KEF +F N + AV ARY +DPL ++ W++ +G FG E L +HPLQ VP LLR + + +DVGVD+N A H+H G+L FVPGLGPRKA LR+ + GG+V +RKA+L+ ++L +VY NA FLRVR ++L+ Q + P DD+R HP+ Y WA +I +AL++ Q D++ + M+DS+ ++R + DP+L PP + D + +LD+ A+AD +E+ G GK QL E+R PY D R+P PP LF+ LTGETDA+L G V +V+++N+ G ++KLEG + GF+P + DD + S + +V+ ++ A I +V + LSL++ D + +W+ P A + A + D + +++ G A E V RS HP ++N TH ++ L + D GEAL+RPS+K D L++ WM G ++ E K + + RL ++ E YE +DE++ R +A ND V+++ +K+ +EV+ L+ K P + Y +C PGY+++ ++ S + + +TP+G++ + F L L+ FK N P A + SSSS++
Sbjct: 306 IPVVGVCSSSDAREGTYLAAVTGSGEVADHVAVPGGTNVDSHRERIVTFLMTSRPEAVVVGSSGGVGSRATARRLAEIVQVATEKWNNRFVQAADEDDEDFEARMESFRRMHSG-MDLDDDEDEVWK-CNVDIVDDNVAQLFGRSVRGKKEFPEFPTNLKVAVSCARYAKDPLGELAYT----WSAASDAGVFGTEMLYLNIHPLQRLVPRTLLLREYERVLCGVTADVGVDVNAACAHDHVHGLLTFVPGLGPRKANNLRQSAERI-GGVVSNRKAVLAKRMLGPVVYNNAVAFLRVRA----TDQLEDQRLHPLDDSRCHPDVYQRNRWAVKIAVDALELGDSVAQDDENAITAIRDIMDDSQLEVKRLYDATKSEWERAYGSGTFNTAEWDPKLLPPESWRDKIEELDIEAFADMIEQNGSGKWLTQLTMTKWELRMPYEDPRKPMEPPQGARLFKLLTGETDASLCPGKHVTGKVIKNNDFGSQIKLEGD--VPGFIPLRNLADD---------HVESADDIVQVGTVVNAIITQVKMDHMCVDLSLKREDFKKKSSEWERPASLAPLDPYFDRAAALAIDAEKDKERDERLESLRLKVGGTRIEGDDDAAEGGVAHRRSGKVTRRACAHPAFRNATHDTVDRELKDAGDAMIGEALVRPSNKSCDSLAVHWMVRPGCIKVIEVLEEDKDTDASIGNRLIVKKEVYESIDELLGRFIAPMNDRVEEVQHHRKFMDKLEDEVDERLQEMKRANPKGVFYQVCWSESYPGYISLRFIMNRSCRHHTIGITPDGFLWGGKTFGNLDRLMNEFKKNPQGPGARKPASAPSQSSSSSQQ 1121
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A7S4R4E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4E1_9STRA) HSP 1 Score: 383 bits (983), Expect = 1.120e-106 Identity = 268/836 (32.06%), Postives = 405/836 (48.44%), Query Frame = 1
Query: 10 VMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIK----AFAKSSRPHVVCVSTSAGQPCRFMM----DLLVDRRSGQNGEPRRGAIPDALREYKDERGGEF---------DDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQ----------VDDDYFPIVESAMEDSREALQRFCSQDSTA--------------DPR--LPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARVFGATGWVRPHTLPRLDNKFDAMERMRGAAS---------ASAREYNVRFP--------------------RSIMHPQYKNFTHVEAEKYLTENSDGRGEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFIC-RRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTN 2298
++G+ +TD ++ ++ V G + DHL IP G K+K F SRP V V T G R M D++ N +G D E D R F ++ED+ED WK +V ++D+VA +F RS RG+KEF DF VN + A+ +AR+ +DPL ++ W+ +G FG E L +HPLQ +P P LLR + + +AV++VGVD+N A +H G+L FVPGLGPRKAA L++ I + GG+VPSRK LL+ +LL +V+TN+ FLR+R+ +RL+ Q + P DDTR+HP+ Y +WA +I +AL+++ +D + M+DSR +QR +PR +P D V +LDL +AD +E+ G GK L I E R P+ D R+P P + D+LF LTGETD TL G V RV R+ + G +VKL G + GF+P + D + S +VK ++ A + +V K + LSL+ + P W+ P G LP LD FD MR S A RE + R R+ HP ++N H E + L G+AL+RPS++ AD L++ W+ G ++ E K+ + +L I+GE Y D+DE+I R V N V D+ +K+ ++V+ LR K ++P + YF+C PGY+++ Y+ + + + ++P+GY+ + + + LL FK N
Sbjct: 1131 IVGVCCATDSKDATYLAGVTERGELKDHLAIPGGTRIDGNKMKEKVITFLMQSRPAAVVVGTGGGVQSRLMARKLGDIVTQAMERWNNCHIQGEEEDD--EDFDARINAFRRMYPTADINNEDDEDFQWK-CNVDIVEDNVAQLFGRSIRGKKEFPDFAVNLKCAIAVARHAKDPLGELTYA----WSVASDAGVFGAEMLYLNVHPLQRFLPKPLLLRQYERVLCNAVAEVGVDVNGACTFDHMHGMLTFVPGLGPRKAAALKQGIDRI-GGVVPSRKDLLARRLLGPVVFTNSVAFLRIRD----IDRLNNQFLFPLDDTRLHPDVYTRNNWAVKIAIDALELESLDLGDDAGDAEDLKARALRDVMQDSRNEVQRLFDATKAEWEGLYGPTFDIAGWNPREDVPAERWRDKVEELDLDTFADMIEQSGLGKWLSHLVMIKWEFRLPFEDPRKPMEPLAGDKLFRLLTGETDLTLCPGKEVTGRVFRNGDFGSRVKLLEG-DVPGFIPLRNLADT---------HVESAEDIVKVGDVITAIVTEVKKDHMCVDLSLKMEHFRKLPSSWERPKG---------------LPPLDMSFDKTAAMRVEQSKNKAREAHLAKIRENSARRSQQGGTENGDTPLERTGRVTRRTCTHPAFRNAKHAEVDNELRSADTIVGDALVRPSNRVADSLAVHWLVRPGCIRVIEVTEKDKERDDSIGKKLIIKGEVYGDIDELIGRYVDPMNARVQDVQHHRKFLDMLEDDVDHKLRELKKKQPGGVFYFLCWNESHPGYLSLRYIMNKTARSHHIGISPDGYVWGKETYVDVERLLNEFKKN 1929
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A448YUZ9_9STRA (S1 motif domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUZ9_9STRA) HSP 1 Score: 367 bits (941), Expect = 2.220e-101 Identity = 256/832 (30.77%), Postives = 398/832 (47.84%), Query Frame = 1
Query: 4 VRVMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIKA----FAKSSRPHVVCVSTSAG----QPCRFMMDLLVDRRSGQNGEPRRGAIPD---------ALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQD---EVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQV-VDPFDDTRVHPECYNTQDWAQRICANALDVQVDDDY------FPIVESAMEDSREALQRFCS---------------QDSTADPR--LPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARVFGATGWVRPHTLPRLDNKFDA-----------------MERMRGAASASAREYNVRFPRSIM----HPQYKNFTHVEAEKYLTENSDGR-GEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFIC-RRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTN 2298
+R++ I S DP+E ++ +V G +DHL IP G K++ F SRP + V TS G CR + D++ + +G D A +Y D++D+ED WK + + D V+ +F S RG+KEF D R A+ +ARY +DPL ++ W +G FG E F ++P+Q P LLR + + D V++VG D+N E+ H G+L FVPGLGPRKAA L++++ LG VP+R++LL ++ + +VY N+ FLR+ ER QV + P D+TR+HP+ Y +WA +I +AL+ + + ME+S + +QR S +PR +P + +D V +LDL YA +E G GK ++ I E R P+ D R P + D+LF +TGE+D TLR G + +++ + + G KVKLEG L F+ + DD + + VV ++ A + V K + +SL++ D P WD RP +LP LD FD +E M+ + S E R R + HP ++N E ++ L GEALIRPSSK AD L++ WM+ EG+ ++ E K + + LKI+GE Y +DE++ R +A NDLVD+L+ +K+ S ++++ LR KA N IPY IC PGY ++ ++ +++ ++ + + P G++ + FK+L LL FK N
Sbjct: 1051 LRMVAISCSNDPKEPTYLASVSEYGEFIDHLAIPGGVRVDIGKMRQKIIDFLLLSRPAAILVGTSGGFQARHLCRKLNDIVTEATDRWAKRDIQGEDEDDEDFQYRQSAFDKYLPSNMPGMDEDDDEDLDWK-CNADLIDDSVSQVFGHSPRGKKEFPDHAPALRVAISIARYGKDPLAELAYA----WNVASDTGLFGTELFYFNINPMQQLLKRFKGPLLLRHYERALCDVVAEVGADVNKCCEYSHLQGLLTFVPGLGPRKAAFLKQKVEQ-LGSSVPTRRSLLENRFMGPVVYNNSIAFLRIHH---FDERTSHQVQLHPLDNTRLHPDVYQKNNWASKIATDALERAEEGSRNKEQAGIKALRDVMENSDQEIQRLYMGTKEEWEMHYGVGTFNASNWNPRTDVPVEHWHDKVEELDLDTYAHMIEENGHGKWHSHMEMIKWEFRLPFVDPRSPMDTLAGDKLFRLITGESDQTLRPGKEITGKILANTDFGSKVKLEGD--LPAFISLRNLADD---------HVEAAEDVVAVGAIVTAVVTAVKKDHMSVDMSLKREDFIKQPSSWD---------------RPESLPVLDEYFDQIASKTIEEKKTKEREARLEAMQISLSTKVGEDGKRIGRVVRRHCAHPAFRNAKGNELDEELKSGGPAMVGEALIRPSSKSADSLAIHWMYSEGKIKIIEVNEEKKDLDASIGKVLKIKGESYGSIDELMGRYIAPLNDLVDELVNHRKFSELSEDDLDDQLRKDKAANKNSIPYNICWMEMHPGYSSLRFILSSTPRQHPIGMCPNGFVWGAKTFKSLDLLLNDFKKN 1847
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A7S2Y3Q6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y3Q6_9STRA) HSP 1 Score: 348 bits (892), Expect = 1.490e-99 Identity = 221/724 (30.52%), Postives = 367/724 (50.69%), Query Frame = 1
Query: 277 ALREYKDERGGEFDDE-DEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQ-VDDDYFPIVESAMEDSREALQRF------------------CSQDSTADPRLPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDE----LFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARV-----FGATGWVRPHTLPRLDNKFDAMERM--RGAASASAREYNVRFPRSIMHPQYKNFTHVEAEKYLTENS-DGRGEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFICRRGA-PGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTNAPMLARNSRSSSSRKDG 2349
A R+ + GG ++E DEE+ WK +V ++D VA ++ RS RG+KEF DF VN + ++ LAR+ + PL ++ W+ +G FG E L +HPLQ +P LLR + + D ++VG DIN A + +H G+L F+PGLGPRKAA L++ + G I R+ LL +L+ +VY NA FLR+++ +L + Q + P D+TR+HP Y DWA +I +AL+ + V + A+ DS++ ++R C ++ +P D V LDL A+A+ +E +G G+ + ++ E R P+ D R+P + D LFE +TGE+D TLR G V +VM + + G +VK+EG + F+P ++DD + S +V Q++ A II+V K + +SL+ D + P W+ P GA+ + + + +A++ RG + S N R+ HP ++N + E + L E + G+ALIRPS+K +D L++ W+ EG ++ E K+ + + LKI+ E Y +DE++ R + ND VD++ +K+ + ++V+ L+A K P IPY +C PGY ++ ++ ++ + ++ +TP+G+ R F T +L+ FK N + S+K G
Sbjct: 21 ARRDALERLGGRNNNEYDEEEEDWK-CNVDIVEDKVAQLYGRSVRGKKEFPDFPVNHKCSIALARHAKGPLAELTYT----WSVASDAGVFGTEMLYLNVHPLQQLLPRTMLLREYERVLCDVTAEVGTDINTACQFDHLRGLLMFIPGLGPRKAANLKQMVADSTGAIA-RRRDLLEQRLMGPVVYNNAVAFLRIQQSDQLVD----QHLHPLDNTRLHPAIYIQHDWAVKIAFDALERENVKSKAIKALTDAINDSQQDVERLLDLTQQEWELRYGGTLDRCRKEWDPRVNVPSSQWRDKVGDLDLEAFANAIESKGHGRWHSHFEMLLWEFRLPFADPRKPMESLTGDSQRERLFELITGESDETLRPGKEVTGKVMSNGDFGTRVKIEGD--IPAFIPLRNLSDD---------HVESAEDIVSQGQIVTAIIIEVKKDHMTVDMSLKMEDFRREPSSWERPSTLTPFDPHFDTGASTRIDEDNKKKREAHIEALQTALGRGTENESGGRKNRVVKRACTHPAFRNAKNNEVDSELREAGIEMVGQALIRPSAKQSDSLAIHWVVKEGSIKVIEVVEEDKETDAAIGNTLKIKDETYGSIDELLGRYIEPMNDFVDEIQCHRKFVDLTEDDVDEKLKAEKKANPKGIPYALCWTDMHPGYASLRFVTTSTPRSHLIGITPKGFSWGSRSFLTAEQLINEFKKNPRGTQSKKPVNDSQKSG 723
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: B7G582_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G582_PHATC) HSP 1 Score: 357 bits (915), Expect = 4.550e-98 Identity = 246/814 (30.22%), Postives = 388/814 (47.67%), Query Frame = 1
Query: 10 VMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIK----AFAKSSRPHVVCVSTSAGQPCRF----MMDLLVDRRSGQNGEPRRGAIPD---------ALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQ----VDDDYFPIVESAMEDSREALQRFCSQDSTA--------------DPRL--PPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARV-----FGATGWVRPHTLPRLDNKFDAMERMRGAASASAREYNVRFPR-------SIMHPQYKNFTHVEAEKYLTENSDGR-GEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFIC-RRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTN 2298
++GI + D ++ ++ +V G D L +P G K++ F RP + V TS G R M DLL + +G D A R+ + FDD+DE D WK +V + D VA +F RS RG KEF DF VN + A+ +ARY QDPL ++ W+ +G FG E L +HP+Q +P +LLR + + D ++VG DIN A +H G+L FV G+GPRKAA L++ + LG + R+ LL ++++ +VY N FLR+R +L E Q + P DDTR+HP+ Y +WA +I +AL+ + D + ME+S ++R + DPR+ P D V +LDL A+A+ +E G+ L+ I E R PY D R+P P S D LF +TGE+D +LR G V +V+R+ + G +VKLEG + F+P ++D+ + + +V Q++ A I V K + +SL+ D + NP W+ P+ + A + R + +A++ G A E + R + HP ++N E + L E GEALIRPSSK +D L++ W+ EG ++ E K+ + + LK++ + Y +DE++ R +A ND V++L+ +K+ +E++ L A K E P IPY C GY ++ ++ + + + + ++P GY F +L L+ FK N
Sbjct: 1038 IVGICCTADGKDATYLASVTERGESNDFLAVPSGTKVDQGKMREKVVTFLMQCRPAAIVVGTSGGFESRLLTRKMGDLLKEAEQRWTNRYIQGEDEDDEAFEIRQAAFRQLQP--SAHFDDQDEGD--WK-CNVDLIDDSVAQLFGRSVRGRKEFPDFAVNLKCAIAVARYAQDPLGELTYA----WSVASDAGAFGTEMLYLNIHPMQQLLPRTRLLREYERILCDVTAEVGTDINSACTFDHLRGLLVFVAGMGPRKAANLKQTLSQ-LGSALSRRRDLLENRMIGPVVYNNLVAFLRIRRVDQLVE----QFLHPLDDTRLHPDVYLRHNWAIKIAFDALEREDSKTKDAASIKALRDVMENSHHEVERLFMATKSEWEMNYGLTFNIKDWDPRVNVPKDMWRDKVEELDLEAFANMIEDTKLGRWHSHLEMIKWEFRLPYVDPRKPMEPVSSDRLFSLITGESDQSLRPGKEVTGKVVRNGDFGSRVKLEGE--IPAFIPLRNLSDE---------HVETAEDIVAAGQIVTAVITMVKKEHMTVDMSLKMEDFRKNPSSWERPLSLPPIDVHFDLVAAAKIEEDNNKRREAHLEALQLSLGTKGADGEEGTGQRKRIGRVARRACTHPAFRNAKTDEITRELKEGGAAMVGEALIRPSSKNSDALAIHWVVKEGSIKVVEVIEEDKETEASIGNTLKVKSQSYGSIDELLGRYIAPMNDFVEELVNHRKFLDIPEDELDAKLVAEKKENPKSIPYSACWMENHAGYASLRFVSSTNARSHPIGISPTGYTWGSNTFPSLDRLINAFKKN 1826
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A7S4ELD9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ELD9_9STRA) HSP 1 Score: 356 bits (914), Expect = 5.950e-98 Identity = 246/817 (30.11%), Postives = 393/817 (48.10%), Query Frame = 1
Query: 4 VRVMGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIKA----FAKSSRPHVVCVSTSAG----QPCRFMMDLLVDRRSGQNGEPRRGAIPD---------ALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQD---EVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQV-VDPFDDTRVHPECYNTQDWAQRICANALDVQVDDDY------FPIVESAMEDSREALQRFCS---------------QDSTADPR--LPPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARVFGATGWVRPHTLPRLDNK-----FDAME-RMRGAASASAREYNVRFPRSIMHPQYKNFTHVEAEKYLTENSDGR-GEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFIC-RRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTN 2298
+R++ I S+D +E ++ +V G +DHL IP G A K++ F SRP + V TS G CR M D++ + +G D A +Y DD+DEED WK + + D V+ +F S RG+KEF D R A+ +ARY +DPL ++ W +G FG E ++P+Q P LLR + + DAV+ VG D+N E+ H G+L FVPGLGPRKAA L++++ LG V +R++LL ++ + +VY N+ FLR+ E Q+ + P D+TR+HP+ Y +WA +I +AL+ + + ME+S + ++R S +PR +P + +D V +LDL +A +E G GK ++ I E R P+ D R P + D+LF +TGETD +LR G + +++ + + G KVKLEG + F+ + DD + + VV ++ A I V K + LSLR+ D P WD P + + T+ +K +AM+ ++ + R+ HP ++N E E+ L GEALIRPSSK D L++ WM+ +G+ ++ E K + + LKI+GE Y +DE++ R +A NDLV++L+ +K+ S ++++ LR KA N IPY IC PGY ++ ++ +++ ++ + ++P G++ + FK+L LL FK N
Sbjct: 1027 LRMVAISCSSDSKEPTYLASVSECGEFIDHLAIPGGVRVDAGKMRQKVIEFLLLSRPAAILVGTSGGFQARHLCRKMNDIVTEATDRWTKRDIQGEDEDDEDFQYRQSAFDKYLPSNMPGMDDDDEEDLDWK-CNADLIDDSVSQVFGHSPRGKKEFPDHASALRVAISIARYGKDPLAELAYA----WNVASDTGLFGTELLYFNINPMQQLLKRFKGPLLLRHYERALCDAVAAVGADVNKCCEYSHLQGLLTFVPGLGPRKAAFLKQKVEQ-LGSSVATRRSLLENRYMGPVVYNNSIAFLRIHH---FEEHNSHQIQLHPLDNTRLHPDVYQKNNWASKIATDALERAEEGTRNKEQAGIKALRDVMENSAQEIERLYMGTKEEWEMHYGVGTFNASNWNPRTDVPVEHWHDKVEELDLDTFAQMIEENGHGKWHSHMEMIKWEFRLPFVDPRNPMDTLAGDKLFRLITGETDQSLRPGKEITGKILANTDFGSKVKLEGD--IPAFISLRNLADD---------HVEAAEDVVGVGTIVTAIITAVKKDHMSVDLSLRREDFIKQPSTWDRPESLTPLDENFDEIACKTIEEKKSKEREARLEAMQIKLSNKVGEDGKRIGRVTRRACAHPAFRNAKGTELEEELKSGGPAMVGEALIRPSSKSVDSLAIHWMYSDGKIKIIEVNEEDKDTDASVGNVLKIKGESYGSIDELMGRYIAPMNDLVEELVNHRKFVDRSEDDLDEELRKGKAANKNSIPYNICWMEMHPGYSSLRFILSSTPRQHPIGISPNGFVWGAKTFKSLDILLNDFKKN 1823
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Match: A0A1Z5J5Z6_FISSO (Transcription elongation factor SPT6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5Z6_FISSO) HSP 1 Score: 355 bits (912), Expect = 1.160e-97 Identity = 237/807 (29.37%), Postives = 397/807 (49.19%), Query Frame = 1
Query: 13 MGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIKA----FAKSSRPHVVCVSTSAGQPCRFMMDLLVD----------RRSGQNGEPRRGAIPDALREYKDERGGEFDDEDEEDSSWKHVSVAFMKDDVAGIFARSSRGEKEFQDFTVNQRTAVGLARYLQDPLVDIVAMFLSMWTSMDSSGHFGGETFSLKLHPLQDEVPPPQLLRVWSHRMMDAVSDVGVDINHAAEHEHAMGVLQFVPGLGPRKAARLRERIGPVLGGIVPSRKALLSSQLLKSLVYTNAAGFLRVRERGKLAERLDGQVVDPFDDTRVHPECYNTQDWAQRICANALDVQ----VDDDYFPIVESAMEDSREALQRFCSQDSTA--------------DPRL--PPMNLNDSVNQLDLSAYADELERQGEGKRALQLDSIVEEIRYPYRDRRQPYAPPSEDELFEWLTGETDATLREGVLVPVRVMRHNEHGVKVKLEGGPGLFGFVPADYVTDDVLPNDPITGQMASLNTVVKTNQLMEAAIIKVDKGRFELKLSLRKSDTQPNPDKWDEPVGAARV-----FGATGWVRPHTLPRLDNKFDAMERMRGAAS---ASAREYNVRFPR-SIMHPQYKNFTHVEAEKYLTEN-SDGRGEALIRPSSKGADHLSLTWMWMEGEFMHTDIQELGKQAGSMLAPRLKIRGEEYEDLDEIISRRVAACNDLVDDLLASQKYRPGSVEEVEGLLRASKAEEPNRIPYFIC-RRGAPGYVNIMYLPANSIKKEVVEVTPEGYMLSRRCFKTLPELLKWFKTN 2298
+G+ S+DP+E ++ AV G D+L IP G + KI+ F +RP V V TS G R + +VD +R Q + A +++ + DD+D+++ W +V + D V+ +F RS R +KEF D ++N + A+ +ARY +DPL ++ W+ SG+FG E L +HP Q +P LLR + + D V+++GV++N +H G+L FVPGLGPRKAA L + +GG + R+ LL ++L +VY NA FLR+ + +LA+ ++ P D TR+HP+ Y +WA +I +AL+ + + V M+DS + R DPR+ P D V +LDL +A+ +E+ G G+ L+ I E R P D R+P P S D++F +TGETD +LR G + +V+R+ + G +VKLEG + F+P ++D+ + S + V Q++ A + +V K + +SL+ D + P W+ P + A + + D DA+ G R+ R R + HP ++N + E E+ L + S GEALIRPS+K +D L++ W+ EG ++ E K+ + + LKI+ + + +DE++ R +A ND V++L++ +K+ + EEV+ L+ K P IPY +C PGY ++ ++ +++ + + ++P+G+ + + L L+ FK N
Sbjct: 1008 VGVSCSSDPKEATYLAAVTDRGESSDYLAIPSGVKVDSPKIREKVVMFLIQTRPAAVMVGTSGGFESRLLQRKMVDLINEAVQRWNKRDIQGEDEDDDAFLSRQEQFRQFQTNIHDDDDQDE--WT-CNVELIDDSVSQLFGRSVRSKKEFPDHSMNLKCAISIARYAKDPLAELAYA----WSVASDSGNFGTEMLYLNIHPSQQLLPRTILLRHYERALCDIVAEIGVNLNKCTALDHLKGLLTFVPGLGPRKAANLNHMLSQ-MGGAIAKRRDLLEKRVLGPVVYNNAVAFLRIEDADQLADH----ILHPLDGTRLHPDVYIRNNWASKIAFDALEREDPKTKESAAIKAVRDVMDDSHLEVDRLFKATKAEWERHYGPTFNIKEWDPRVNVPHDQWRDKVEELDLDTFANMIEQNGHGRWHTHLEMIKWEFRLPAADPRKPLEPLSGDKVFHLITGETDQSLRPGKEITGKVIRNGDFGSRVKLEGD--IPAFIPLRNLSDE---------HVESADDFVSVGQIVTAVVTEVKKDHMTVDMSLKLEDFRKKPSSWERPTSLFSLDECFDVQAANKIEDDNAKKRDAHVDALLVSLGRTGDDVGGLRQGKRRVVRRACTHPAFRNAKNKEVERELLDGGSQMVGEALIRPSNKSSDSLAIHWVVKEGMIKVIEVLEENKETDASIGNILKIKDDAFGSIDELLGRFIAPMNDYVEELVSHRKFLDLAEEEVDAKLKDEKKANPKSIPYALCWLEMHPGYASLRFVASSTPRNHTIGISPKGFSWNSITYANLDVLIDSFKKN 1791 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3041.8240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3041.8240.1 >prot_H-paniculata_contig3041.8240.1 ID=prot_H-paniculata_contig3041.8240.1|Name=mRNA_H-paniculata_contig3041.8240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=958bp MGIYVSTDPREDSWAVAVDASGSVLDHLQIPFGRDARAAKIKAFAKSSRPback to top mRNA from alignment at H-paniculata_contig3041:641..18106+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3041.8240.1 ID=mRNA_H-paniculata_contig3041.8240.1|Name=mRNA_H-paniculata_contig3041.8240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17466bp|location=Sequence derived from alignment at H-paniculata_contig3041:641..18106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3041:641..18106+ >mRNA_H-paniculata_contig3041.8240.1 ID=mRNA_H-paniculata_contig3041.8240.1|Name=mRNA_H-paniculata_contig3041.8240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5748bp|location=Sequence derived from alignment at H-paniculata_contig3041:641..18106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |