mRNA_H-paniculata_contig30388.8233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30388.8233.1
Unique NamemRNA_H-paniculata_contig30388.8233.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS)

HSP 1 Score: 215 bits (547), Expect = 1.610e-62
Identity = 118/307 (38.44%), Postives = 181/307 (58.96%), Query Frame = 1
Query:    4 GTWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDL-VIAGRREKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESADKPSQQNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENP 921
            GTW+ EEL   P     +  KW ++ K   DG + RYKARLVA+GFSQ+   DFFET APV  + T R + ++A + ++ + GMD+  AYLN  ++E +++  PPE S  S       HL+  LYGLKQSGR WN  LN   +G+G  R   D C+Y  + D G   ++V V+VDD+ ++A   E +   K  + +  ++ D+G +  +LG+++ R+   GTI +SQ +YI +VL+R G ++C+ V  P +  V++    + D           Y   VGSLMYA+ G+RPDIA+AV + ++ ++NP
Sbjct:   12 GTWQLEEL---PQDRSLVDCKWTYRLKRDGDGKITRYKARLVAKGFSQIPGTDFFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGK---AAHLKLMLYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNP 310          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.440e-61
Identity = 128/308 (41.56%), Postives = 183/308 (59.42%), Query Frame = 1
Query:    1 NGTWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPPEVSPFSRDI-PFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESAD-KPSQQNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRME 915
            NGTWE   L  LP G + I + W+   K  + G + R KAR +A+G+SQ    D+  T APVA M+T+R V +LA   D+EL+ MD+D AYL + +EE +++K PP    +  +    V  LR +LYGLKQSGRNW+  ++G+  G GL  S  D CLY      GE  L++ +YVDDL+I    R   D+FK +IS+  SMKDL  L  +LG+ ++R+R N T+ ISQ  YI  +L ++G  +C+ V  P EG   ++  +  D KP        EY  +VGSL+YA+  TRPDIA+AV    + ++
Sbjct:  223 NGTWE---LTPLPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGT--LTKMDGKDVKPDN------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 518          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 220 bits (560), Expect = 5.440e-61
Identity = 127/303 (41.91%), Postives = 182/303 (60.07%), Query Frame = 1
Query:   34 LPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESADKPSQQN----GNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCR 927
            +P+G+K I +K + + K  ++G + RYK R+VA+GF+Q    D+ +  APVA + ++R + +LA+ YD+EL+ MD+ AAYLN  ++E L++  P  V+    +      L+ +LYGLKQ+GR WN TL+  L G+G +R   ++CLY  RDD G+   LV VYVDDL++A   R  +DE K  ++    M+DLG  S +LGI +RRDRP   I +SQ  YI  VL RYG  +C+    P    VK SA +  D  +  +    G S  Y  ++GS+MYA  GTRPDIAY V    R   NP R
Sbjct: 1020 IPSGVKPITSKPVLRVKFDKNGGIERYKIRIVARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYLMPPDGVAI---EPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKR 1318          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A146HMH3_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HMH3_MYCCL)

HSP 1 Score: 215 bits (547), Expect = 2.950e-59
Identity = 125/310 (40.32%), Postives = 179/310 (57.74%), Query Frame = 1
Query:    4 GTWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVE--EGLFVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESADKPSQQN-GNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENP 921
            GTWE  +L   P+G   + +KW+FK K    G+V RYKARLVAQGFSQV   D+++  APVA ++++R V + A+E D E+  +D+  AYLN  ++  E ++++ PP   P       V HL   LYGLKQSGR W   L      +G +R   D  ++  R+DG     +V V+VDD  +A +R E+V   K ++  +  + DLG +  +LGIEV+RDR   TI++SQ +YI  +L+RYG DE + V  P E    +S+ +S    S         Y   VGSLMY +  TRPDIAYAV   +R ++ P
Sbjct:  995 GTWELVDL---PSGANLVGSKWVFKAKKDSAGNVVRYKARLVAQGFSQVPGVDYYDVYAPVAKLASIRAVLAKAAELDWEIHQVDIKGAYLNGELQADEQIYMRQPPGF-PEPNSAGKVCHLLKTLYGLKQSGRRWYQRLVEIFTAMGFERCECDHGVFFQREDGAVV-CVVVVHVDDCTVAAKRLERVQSLKKDMGTYVDVSDLGEIHWILGIEVKRDRAARTIHLSQRAYIDSILRRYGLDELKPVSTPMETSANLSSSQSPSSTSDLALMRDVPYNAAVGSLMYCAVATRPDIAYAVQSVSRFLKTP 1299          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 213 bits (543), Expect = 9.530e-59
Identity = 122/299 (40.80%), Postives = 180/299 (60.20%), Query Frame = 1
Query:   37 PAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPP-EVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGRREKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESADKPSQ-QNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCR 927
            P     + +K++F+ K   +G +  YKARLVAQGF+QV   DF ET APVA ++++R + +LA+ YD EL  MD+   YLN  +EE +++  PP +  P    +  V  L+  LYGLKQSGR ++  ++G L  +GL RS +D C++  R++     LL+ + VDD  IAG +  V  FK  IS H  M DLG +  +LGIEVRRDR   T+++SQ +YI  +L R+   + + +  P +    +S  +    P Q ++  +  YR  +GSLMYA+ GTRPDIAYAV   ++ M+NP R
Sbjct:  783 PKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHL--VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCIFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISMHFEMSDLGEMHWILGIEVRRDRDARTLSLSQCAYIDMILARFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMKNPGR 1079          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 213 bits (542), Expect = 1.290e-58
Identity = 122/311 (39.23%), Postives = 184/311 (59.16%), Query Frame = 1
Query:    7 TWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVI-AGRREKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKV---KISAPESADKPSQQNGNST--EYRGMVGSLMYASTGTRPDIAYAVHQAARRMENP 921
            TWE ++L   P   KAI  +W+F RK  E+G + RYKARLVAQGFSQ+   DF  T APV    +LR + ++A+  ++E++ +D+  AYLN  + E +F++ P     F      V  L+  LYGLKQSGR WN  L+  L  +   +S +D C+Y  R + G T+  +TV+VDDL+I   + ++++E K  + +   + DLG    ++G+EV+RDR   TI++ Q SY+  +LK+YG + CR V  P +  V   +++  +  D+P +         Y   VGSLMYA+ GTRPDIAYAV + ++   NP
Sbjct:  759 TWELDDL---PPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQP---DGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSY-ITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQKLSKYSSNP 1061          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 213 bits (542), Expect = 1.370e-58
Identity = 122/299 (40.80%), Postives = 181/299 (60.54%), Query Frame = 1
Query:   37 PAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPP-EVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGRREKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESADKPSQ-QNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCR 927
            P     + +K++F+ K   +G +  YKARLVAQGF+QV   DF ET APVA ++++R + +LA+ YD EL  MD+  AYLN  +EE ++++ PP +  P    +  V  L+  LYGLKQSGR ++  ++G L  +GL RS +D C++  R++     LL+ + VDD  IAG +  V  FK  IS    M DLG +  +LGIEVRRDR   T+++SQ +YI  +L R+   + + +  P +    +S  +    P Q ++  +  YR  +GSLMYA+ GTRPDIAYAV   ++ M+NP R
Sbjct:  960 PKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHL--VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGR 1256          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A4Y9XN50_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XN50_9AGAM)

HSP 1 Score: 210 bits (535), Expect = 6.170e-58
Identity = 128/310 (41.29%), Postives = 183/310 (59.03%), Query Frame = 1
Query:    4 GTWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASV--EEGLFVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVG-IGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISAPESADKPSQQNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENP 921
            GTW  E     P+G   + +KW+FK K    G+V R+KARLVAQGFSQV   D+F+T APVA + ++RTV +LA++ D+EL  +D+  AYLN  +  +E +++K PP  +P   +   +R LR  LYGLKQSGR W   L    V  +GL R  +D  ++  RD+   + L+V V+VDD  IA   +E V+ FK  + +   + DLG L  +LGIEV+RDR   TI++SQ SYI  +++R+  ++ + VP+       +  PE A            YR  VG+LMYAS  TRPDI++AV   +R   NP
Sbjct:  513 GTWVMENA---PSGANVVGSKWVFKAKKDAAGNVVRHKARLVAQGFSQVPGVDYFDTYAPVAKLPSMRTVLALATQQDLELHQIDIKGAYLNGELTADEVIYMKHPPGYTPADAEGRVLR-LRKTLYGLKQSGRRWYQKLTWIFVDRLGLVRCQVDQAVFYRRDES--STLIVAVHVDDCTIAATSKELVESFKAKVREFVEVTDLGELHWLLGIEVKRDRDARTIHLSQHSYIDSIIRRFNLEDAKPVPH-------LRLPEYAIM------RDVPYREAVGALMYASLATRPDISFAVSTLSRFSTNP 803          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 210 bits (535), Expect = 1.170e-57
Identity = 124/309 (40.13%), Postives = 178/309 (57.61%), Query Frame = 1
Query:    4 GTWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKV--KISAPESADKPSQQNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENP 921
            GT+  E+L   PAG   I  KW+F +K  EDG+++RYKARLVAQG+SQ+   D+ ET APV  + ++R    +A+  D+E+  MD+  AYLN  +EE ++++ P      S     V  LR  LYGLKQSGR WN   +  L  IG  +   D C+Y    +G  T  ++TV+VDDL+I     E + E K  +     +KDLG   +++GIE++RDR NGTI++SQ  YI  VL R+G    R V  P +  V  K    +    P+   G    Y+ ++GSL+YA+ GTRPDI++AV +  +   NP
Sbjct:  909 GTYTKEDL---PAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGR---VCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT--IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLDPNVILKKRTDDLVADPAMVGG----YQSVIGSLLYAARGTRPDISHAVQELGQFASNP 1205          
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 210 bits (535), Expect = 1.200e-57
Identity = 129/310 (41.61%), Postives = 188/310 (60.65%), Query Frame = 1
Query:   19 EELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGLFVKLPPEVSPFSRDIP--FVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDRSTIDSCLYSSRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNISQHSSMKDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPAEGKVKISA--PESADKPSQQ--NGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCR 927
            +E+  +P G+K I +K + K K   +G++ RYK R+VA+GF+Q E  D+ E  APVA + ++R + +LA+++D+EL+ MD+  AYLN  + E L++ LPP+      DIP      L+ +LYGLKQ+GR WN T +  L  +G  R   ++CLY  R +GG+   LV VYVDDL++A   R  +DE K  ++    M+DLG  S +LGI++RRDR    I +SQ  YI  VLKR G ++C+ V  P   + +++A  P + D  ++   N  +  Y  +VGSLMYA  GTRPDIAYA     R   NP R
Sbjct: 1035 KEVVPIPEGVKPITSKIVPKIKFDANGNIERYKIRIVARGFTQREGVDYQEVFAPVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPDIAYATGLLGRFSTNPKR 1338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30388.8233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A284QR55_ARMOS1.610e-6238.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA3.440e-6141.56Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A1M2VT18_TRAPU5.440e-6141.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A146HMH3_MYCCL2.950e-5940.32Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A401H6Z2_9APHY9.530e-5940.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A067T5Q4_GALM31.290e-5839.23Integrase catalytic domain-containing protein (Fra... [more]
A0A401GN13_9APHY1.370e-5840.80Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A4Y9XN50_9AGAM6.170e-5841.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A284QR88_ARMOS1.170e-5740.13Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A409WVI7_9AGAR1.200e-5741.61Integrase catalytic domain-containing protein (Fra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30388contigH-paniculata_contig30388:93..1097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score213.8
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size942
Cds size942
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.6315892-CDS-H-paniculata_contig30388:92..2281622929932.6315892-CDS-H-paniculata_contig30388:92..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30388 93..228 -
1691481075.4116561-CDS-H-paniculata_contig30388:92..2281691481075.4116561-CDS-H-paniculata_contig30388:92..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30388 93..228 -
1622929932.6440063-CDS-H-paniculata_contig30388:291..10971622929932.6440063-CDS-H-paniculata_contig30388:291..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30388 292..1097 -
1691481075.4247932-CDS-H-paniculata_contig30388:291..10971691481075.4247932-CDS-H-paniculata_contig30388:291..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30388 292..1097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30388.8233.1prot_H-paniculata_contig30388.8233.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30388 93..1097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30388.8233.1

>prot_H-paniculata_contig30388.8233.1 ID=prot_H-paniculata_contig30388.8233.1|Name=mRNA_H-paniculata_contig30388.8233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
NGTWESEELGRLPAGLKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQV
EVEDFFETSAPVACMSTLRTVFSLASEYDIELEGMDLDAAYLNASVEEGL
FVKLPPEVSPFSRDIPFVRHLRNNLYGLKQSGRNWNNTLNGFLVGIGLDR
STIDSCLYSSRDDGGETNLLVTVYVDDLVIAGRREKVDEFKHNISQHSSM
KDLGSLSRMLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPNPA
EGKVKISAPESADKPSQQNGNSTEYRGMVGSLMYASTGTRPDIAYAVHQA
ARRMENPCRKTSVH
back to top

mRNA from alignment at H-paniculata_contig30388:93..1097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30388.8233.1 ID=mRNA_H-paniculata_contig30388.8233.1|Name=mRNA_H-paniculata_contig30388.8233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig30388:93..1097- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGAACATGGGAAAGCGAAGAATTGGGGAGGCTACCGGCAGGGCTGAA GGCGATTCGTACAAAATGGATTTTCAAGCGGAAACTAAAGGAGGACGGCA GCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACAGGTG GAGGTTGAAGATTTCTTTGAAACCAGTGCCCCCGTAGCTTGCATGTCGAC GTTACGTACTGTTTTTAGCCTGGCCTCCGAATATGATATCGAATTAGAAG GCATGGACTTAGATGCGGCATATTTGAATGCCTCAGTAGAAGAAGGGCTG TTTGTTAAGCTACCCCCCGAGGTTTCCCCTTTCTCCCGAGACATACCGTT TGTGCGCCACCTGCGTAATAACCTGTACGGCCTCAAGCAGAGCGGCCGAA ACTGGAATAACACTCTTAACGGTTTTCTTGTTGGGATAGGACTCGACCGT TCTACTATCGACTCATGCTTGTACTCTTCCCGCGACGATGGGGGAGAGAC AAACCTTCTGGTGACCGTGTATGTTGACGACCTGGTCATTGCTGGCCGTC GTGAGAAAGTAGACGAGTTCAAGCATAACATCAGTCAGCATTCTAGTATG AAAGACTTAGGCTCTCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGA CCGCCCTAATGGTACCATAAACATCTCGCAGGCTAGCTACATCCGCGAGG TACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTACCCAACCCTGCA GAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCCCA ACAGAAGTCACTTGGAGCTGTACGGTCGGACATAGACGCAGGAGTACAAG AAAGCAGTAGAGGAAGAAGTGGCAATTCAACTGAATACAGAGGCATGGTA GGATCACTCATGTACGCCTCGACGGGAACTAGACCTGATATAGCATATGC GGTGCACCAAGCAGCACGTCGTATGGAGAACCCATGTCGGAAGACTTCAG TACAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30388:93..1097-

>mRNA_H-paniculata_contig30388.8233.1 ID=mRNA_H-paniculata_contig30388.8233.1|Name=mRNA_H-paniculata_contig30388.8233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig30388:93..1097- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGAACATGGGAAAGCGAAGAATTGGGGAGGCTACCGGCAGGGCTGAA
GGCGATTCGTACAAAATGGATTTTCAAGCGGAAACTAAAGGAGGACGGCA
GCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACAGGTG
GAGGTTGAAGATTTCTTTGAAACCAGTGCCCCCGTAGCTTGCATGTCGAC
GTTACGTACTGTTTTTAGCCTGGCCTCCGAATATGATATCGAATTAGAAG
GCATGGACTTAGATGCGGCATATTTGAATGCCTCAGTAGAAGAAGGGCTG
TTTGTTAAGCTACCCCCCGAGGTTTCCCCTTTCTCCCGAGACATACCGTT
TGTGCGCCACCTGCGTAATAACCTGTACGGCCTCAAGCAGAGCGGCCGAA
ACTGGAATAACACTCTTAACGGTTTTCTTGTTGGGATAGGACTCGACCGT
TCTACTATCGACTCATGCTTGTACTCTTCCCGCGACGATGGGGGAGAGAC
AAACCTTCTGGTGACCGTGTATGTTGACGACCTGGTCATTGCTGGCCGTC
GTGAGAAAGTAGACGAGTTCAAGCATAACATCAGTCAGCATTCTAGTATG
AAAGACTTAGGCTCTCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGA
CCGCCCTAATGGTACCATAAACATCTCGCAGGCTAGCTACATCCGCGAGG
TACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTACCCAACCCTGCA
GAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCCCA
ACAGAAAATGGAACATGGGAAAGCGAAGAATTGGGGAGGCTACCGGCAGG
GCTGAAGGCGATTCGTACAAAATGGATTTTCAAGCGGAAACTAAAGGAGG
ACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCA
CAGGTGGAGGTTGAAGATTTCTTTGAAACCAGTGCCCCCGTAGCTTGCAT
GTCGACGTTACGTACTGTTTTTAGCCTGGCCTCCGAATATGATATCGAAT
TAGAAGGCATGGACTTAGATGCGGCATATTTGAATGCCTCAGTAGAAGAA
GGGCTGTTTGTTAAGCTACCCCCCGAGGTTTCCCCTTTCTCCCGAGACAT
ACCGTTTGTGCGCCACCTGCGTAATAACCTGTACGGCCTCAAGCAGAGCG
GCCGAAACTGGAATAACACTCTTAACGGTTTTCTTGTTGGGATAGGACTC
GACCGTTCTACTATCGACTCATGCTTGTACTCTTCCCGCGACGATGGGGG
AGAGACAAACCTTCTGGTGACCGTGTATGTTGACGACCTGGTCATTGCTG
GCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATCAGTCAGCATTCT
AGTATGAAAGACTTAGGCTCTCTCTCGCGCATGTTGGGAATAGAAGTACG
ACGTGACCGCCCTAATGGTACCATAAACATCTCGCAGGCTAGCTACATCC
GCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTACCCAAC
CCTGCAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCC
CTCCCAACAGAATGGCAATTCAACTGAATACAGAGGCATGGTAGGATCAC
TCATGTACGCCTCGACGGGAACTAGACCTGATATAGCATATGCGGTGCAC
CAAGCAGCACGTCGTATGGAGAACCCATGTCGGAAGACTTCAGTACATTG
GCAATTCAACTGAATACAGAGGCATGGTAGGATCACTCATGTACGCCTCG
ACGGGAACTAGACCTGATATAGCATATGCGGTGCACCAAGCAGCACGTCG
TATGGAGAACCCATGTCGGAAGACTTCAGTACAT
back to top