prot_H-paniculata_contig30243.8202.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig30243.8202.1
Unique Nameprot_H-paniculata_contig30243.8202.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length157
Homology
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.760e-16
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDEEDGD 130
            LV  G EQC  +PCVFR+MVD+ V +++ +HVD ++VAG + DC  +  + ++  P  NLGE   + GC  + D                +++RF++     +PA+    L P+RDDE+ G+
Sbjct:  473 LVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRFDVQWTSRIPASPGVDLGPKRDDEKAGE 594          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.550e-14
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDE 126
            L+  G EQC V+PCVFR++VD +V  ++ ++VD ++VA  E D   +F +L++  P+ +LGE   Y GC   +D                +++RF++T +  +PA   A L P+RDDE
Sbjct:   99 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDE 216          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.760e-14
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDEE-------------DGDCVGLMI 136
            L+  G EQC V+PCVFR++VD +V  ++ ++VD ++VA  E D   +F +L++  P+ +LGE   Y GC   +D                ++ RF++T     PA   A L+P+ DDE              DG+ VGL++
Sbjct:   30 LIENGFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESMLTRFDVTTTAFTPAATDADLEPKGDDEPXWPVDPCVFRKVVDGEVVGLIV 170          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JPM8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPM8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.890e-14
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDEEDGD 130
            L+  G EQC V+PCVFR++VD++V  ++ ++VD ++VA  E +   +F +L++  P+ +LGE  CY GC   +D                +++RF++T     PA   A L P+RD E   D
Sbjct:  553 LIENGYEQCRVDPCVFRKVVDEEVVGLIVIYVDDILVAADEGEGEEVFASLNKKFPVKDLGECTCYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDYEPTVD 674          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.660e-14
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDEEDGD 130
            L+  G EQC V+PCVFR++VD +V  ++ ++VD ++VA  E +   +F +L++ VP+ +LGE   Y GC   +D                +++RF++T     PA   A L P+RDDE   D
Sbjct:  182 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAAD 303          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.870e-14
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDIDL---------MERFEITCVFELPATYLAGLDPRRDDE 126
            L+  G EQC V+PCVFR++VD +V  ++ ++VD ++VA  E +   +F +L++  P+ +LGE   Y GC   +DL         ++RF++T     PA   A L P+RDDE
Sbjct:  310 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDLSQTAYIESMLKRFDVTTNAFTPAATDADLGPKRDDE 420          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5L5Z0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.340e-14
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDEEDGD 130
            LV  G EQC V+PCVFR+MVD+ V + + ++VD ++VA  + DC  +  +L++     NLGE   + GC  + D                ++E F++     +PA+    L P+RDDE+ G+
Sbjct:   70 LVEKGFEQCKVDPCVFRKMVDEVVVMTIVIYVDDILVAWSDEDCEELLASLNKKFLTKNLGECEWFDGCTIERDVEAGTLKISQTAYIDSMVEPFDVQSTSRIPASPGVDLGPKRDDEKGGE 191          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 8.880e-14
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDE 126
            L+  G EQC V+PCVFR++VD +V  ++ ++VD ++VA  E +   +F +L++  P+ +LGE   Y GC   +D                +++RF++T     PA   A L P+RDDE
Sbjct:   30 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDE 147          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.240e-13
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 0
Query:   25 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDE 126
            L+  G EQC V+PCVFR++VD +V  ++ ++VD ++VA  E +   +F +L++  P+ +LGE   Y GC   +D                +++RF++T     PA   A L P+RDDE
Sbjct:   30 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDE 147          
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.400e-13
Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = 0
Query:    1 MLIHYWSLTLAAKPYFNTTCLVGELVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDIDL----------------MERFEITCVFELPATYLAGLDPRRDDEEDGD 130
            M +++W +  A   Y     LV      G EQC V+PC FR MV++ V ++  + VD ++VAG + DC  +  +L++  P  +  E   + GC  + D+                +ERF++     +PA+    L PRRDDE+ G+
Sbjct: 1359 MNLNHWDVKQAQWGYHAADTLVEN----GFEQCKVDPCDFRRMVEEVVVMITVICVDDILVAGSDEDCEELLASLNKKFPTKDTEECEWFDGCAIERDIEAGTLKISQTAYIDSMVERFDVKSTLRIPASPGVDLGPRRDDEKGGE 1500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1V1_9PHAE2.760e-1634.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE1.550e-1435.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L296_9PHAE1.760e-1432.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JPM8_9PHAE3.890e-1434.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE4.660e-1435.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J7P7_9PHAE4.870e-1437.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5Z0_9PHAE6.340e-1433.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE8.880e-1434.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE1.240e-1334.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTI6_9PHAE1.400e-1330.14Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30243contigH-paniculata_contig30243:2403..2873 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30243.8202.1mRNA_H-paniculata_contig30243.8202.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig30243 5..2905 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig30243.8202.1 ID=prot_H-paniculata_contig30243.8202.1|Name=mRNA_H-paniculata_contig30243.8202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MLIHYWSLTLAAKPYFNTTCLVGELVGLGMEQCMVEPCVFREMVDDKVSL
MLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDIDLM
ERFEITCVFELPATYLAGLDPRRDDEEDGDCVGLMIPQVAKDSWIQVIIL
LNLFRR*
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