prot_H-paniculata_contig299.8121.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig299.8121.1
Unique Nameprot_H-paniculata_contig299.8121.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length446
Homology
BLAST of mRNA_H-paniculata_contig299.8121.1 vs. uniprot
Match: A0A6H5JE62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE62_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.430e-51
Identity = 158/361 (43.77%), Postives = 194/361 (53.74%), Query Frame = 0
Query:  108 PRRYIGEDAGMGDDTGVGGPRGDGRGQAWTVDLCSRRLSLLHRKLRQVKNLLVQQSRDPDSLDPAQVLKVNRKMDLQLEIVELESLRRDLIANEKGGRGRLKYDPATGERGGASTGVADAAVTGGGSNATGKKLAPGPFAGISKSGAGASA-------PSPASYTAPVPEAVDALQQRS--RSQXXXXXXXXXEQLQHQRRPGDSGQKATLDDDHADVIAAAYTTDG--------YKLATPRRPGKSPPXXXQLSSSGACVGEG-EGIGETNEDYDEFVP-----TGGYPKRLASAMSFCRVSNKATCEVLIALGRVTVNGVPASDPMMKVDVVADTVVCNGVGMSLPPKIDNSDDTKKPR 445
            PRRY+G+ AGM D+ GVGGP+GDGRG+ WTVDLC +RLSLLHRKLRQVK+L  QQ+R PDSLD AQ +K+ RK  L  EI ELE+LRRDL   E              E  GAS G  +   +         +L PGPFA  + +G G             A YT       D L+  S  R  XXXXXXXXX                        +  A   +DG          L  P   G+      +    G    EG E  G ++E  +E  P      GGYPKRLA  MSFCRVS+KATCE+L+ +GRVTVNGV A DP +KVD++ D VV NGV ++ P KIDNSD+T++PR
Sbjct:  132 PRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQVKSLQAQQARAPDSLDDAQRVKLGRKQTLLAEISELEALRRDLRQKEW-------------ESDGASAGPKENKKS---------RLPPGPFAAANAAGGGHDTRQHQPEEDDGAEYTR------DGLRLASPKRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGDADLFSDGGGGGVLAMEALIKPSMDGQD--WEKEEGDGGFNWEEGFEDAGGSSEGREEARPMVEALAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGKIDNSDETRRPR 462          
BLAST of mRNA_H-paniculata_contig299.8121.1 vs. uniprot
Match: D7FYC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 4.800e-50
Identity = 149/345 (43.19%), Postives = 182/345 (52.75%), Query Frame = 0
Query:  118 MGDDTGVGGPRGDGRGQAWTVDLCSRRLSLLHRKLRQVKNLLVQQSRDPDSLDPAQVLKVNRKMDLQLEIVELESLRRDLIANEKGGRGRLKYDPATGERGGASTGVADAAVTGGGSNATGKKLAPGPFAGISKSGAGASA-------PSPASYTAPVPEAVDALQQRSRSQXXXXXXXXXEQLQHQRRPGDSGQKATLDDDHADVIAAAYTTDGYKLATPRRPGKSPPXXXQLSSSGACVG----EG-EGIGETNEDYDEF-----VPTGGYPKRLASAMSFCRVSNKATCEVLIALGRVTVNGVPASDPMMKVDVVADTVVCNGVGMSLPPKIDNSDDTKKPR 445
            M D+ GVGGP+GDGRG+ WTVDLC +RLSLLHRKLRQVK+L  QQ+RDPDSLD AQ +K+ RK  L  EI ELE+LRRDL   E              E  GAS G  +             +L PGPFA  + +G G             A YT          +Q     XXXXXXXXX     +   G  G  A +              DG  ++      KS              G    EG E  G ++E  +E       P GGYPKRLA  MSFCRVS+KATCE+L+ +GRVTVNGV A DP +KVD++ D VV NGV ++ P  IDNSD+T++PR
Sbjct:    1 MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQVKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEW-------------ESDGASAGPKEKK----------SRLPPGPFAAANAAGGGHDTRQHQLEEDDGAEYTRDGLRLASPKRQVQXXXXXXXXXXXXXXXXSRPSAGTPGAAAAVPSPSLGDADLFSDGDGGGVSAMEALIKSSMDGQDWEKEEGDGGFNWEEGFEDAGGSSEGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGTIDNSDETRRPR 322          
BLAST of mRNA_H-paniculata_contig299.8121.1 vs. uniprot
Match: A0A835YSP6_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.760e-10
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 0
Query:  372 GYPKRLASAMSFCRVSNKATCEVLIALGRVTVNGVPASDPMMKVDVVADTVVCNGVGMSLPPKIDNS 438
            G PK+L + +S+CRVS + TCE+L+A+GRVTVNG   ++   KVD++ D ++ NG  + +P K DN+
Sbjct:  166 GLPKKLGTVLSYCRVSTRETCEMLVAIGRVTVNGEVVTNADKKVDILNDEIIANGARVEIPDKFDNT 232          
BLAST of mRNA_H-paniculata_contig299.8121.1 vs. uniprot
Match: A0A4D9D3K9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3K9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.490e-7
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 0
Query:  362 EDYDEFVPTGGYPKRLASAMSFCRVSNKATCEVLIALGRVTVNGVPASDPMMKVDVVADTVVCNGVGMSLP 432
            ED ++ V  G  P+ +   + +CR+S+KATCE+L+ LG+V VNGV   DP+  VD+V D +  +G  ++LP
Sbjct:  166 EDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLP 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig299.8121.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE62_9PHAE1.430e-5143.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYC7_ECTSI4.800e-5043.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP6_9STRA2.760e-1046.27S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9D3K9_9STRA2.490e-742.25Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 272..292
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..446
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.496
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 374..429
e-value: 1.9E-6
score: 29.1
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 375..440
score: 8.534

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig299contigH-paniculata_contig299:28206..36869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig299.8121.1mRNA_H-paniculata_contig299.8121.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig299 28110..36869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig299.8121.1 ID=prot_H-paniculata_contig299.8121.1|Name=mRNA_H-paniculata_contig299.8121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=446bp
MRRARCCGIATIAVCALAERNCCGFQAPIVPQFIVVCSQPAAIRRPASRV
EEGLKLCELAAARGSPGGREGRFDVRVERAGKLTLYSRRDEENFENLPYT
ETMRSDQPRRYIGEDAGMGDDTGVGGPRGDGRGQAWTVDLCSRRLSLLHR
KLRQVKNLLVQQSRDPDSLDPAQVLKVNRKMDLQLEIVELESLRRDLIAN
EKGGRGRLKYDPATGERGGASTGVADAAVTGGGSNATGKKLAPGPFAGIS
KSGAGASAPSPASYTAPVPEAVDALQQRSRSQQQETQQHESEQLQHQRRP
GDSGQKATLDDDHADVIAAAYTTDGYKLATPRRPGKSPPPPPQLSSSGAC
VGEGEGIGETNEDYDEFVPTGGYPKRLASAMSFCRVSNKATCEVLIALGR
VTVNGVPASDPMMKVDVVADTVVCNGVGMSLPPKIDNSDDTKKPRT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd