mRNA_H-paniculata_contig299.8120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig299.8120.1
Unique NamemRNA_H-paniculata_contig299.8120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig299.8120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig299contigH-paniculata_contig299:19033..19307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size275
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig299.8120.1prot_H-paniculata_contig299.8120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig299 19111..19287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.3576927-UTR-H-paniculata_contig299:19032..191101622929913.3576927-UTR-H-paniculata_contig299:19032..19110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig299 19033..19110 +
1691481066.8019388-UTR-H-paniculata_contig299:19032..191101691481066.8019388-UTR-H-paniculata_contig299:19032..19110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig299 19033..19110 +
1622929913.3930457-UTR-H-paniculata_contig299:19287..193071622929913.3930457-UTR-H-paniculata_contig299:19287..19307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig299 19288..19307 +
1691481066.8198833-UTR-H-paniculata_contig299:19287..193071691481066.8198833-UTR-H-paniculata_contig299:19287..19307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig299 19288..19307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.37471-CDS-H-paniculata_contig299:19110..192871622929913.37471-CDS-H-paniculata_contig299:19110..19287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig299 19111..19287 +
1691481066.8112366-CDS-H-paniculata_contig299:19110..192871691481066.8112366-CDS-H-paniculata_contig299:19110..19287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig299 19111..19287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig299.8120.1

>prot_H-paniculata_contig299.8120.1 ID=prot_H-paniculata_contig299.8120.1|Name=mRNA_H-paniculata_contig299.8120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MLGGMNEDGCRADDRELGWTREIGAVERVWRHMTTRHGERVARQARIANV
TRTLMQAL*
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mRNA from alignment at H-paniculata_contig299:19033..19307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig299.8120.1 ID=mRNA_H-paniculata_contig299.8120.1|Name=mRNA_H-paniculata_contig299.8120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=275bp|location=Sequence derived from alignment at H-paniculata_contig299:19033..19307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGGGTAAGGACACTCGAATCTTCCCCCGCCGCAGCCGCCGGTGCCTC
GTCATTGACCGAGGGGAACATAGCCAAAATGTTGGGAGGAATGAATGAGG
ATGGATGTAGGGCAGATGACCGGGAACTTGGATGGACAAGAGAGATAGGA
GCGGTGGAAAGGGTCTGGCGGCACATGACAACTCGGCACGGGGAGAGGGT
GGCGAGGCAGGCTCGAATAGCTAATGTTACGAGGACCCTTATGCAAGCGC
TTTGATGGCGATTAGTACAGCAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig299:19033..19307+

>mRNA_H-paniculata_contig299.8120.1 ID=mRNA_H-paniculata_contig299.8120.1|Name=mRNA_H-paniculata_contig299.8120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig299:19033..19307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGGAGGAATGAATGAGGATGGATGTAGGGCAGATGACCGGGAACT
TGGATGGACAAGAGAGATAGGAGCGGTGGAAAGGGTCTGGCGGCACATGA
CAACTCGGCACGGGGAGAGGGTGGCGAGGCAGGCTCGAATAGCTAATGTT
ACGAGGACCCTTATGCAAGCGCTTTGAATGTTGGGAGGAATGAATGAGGA
TGGATGTAGGGCAGATGACCGGGAACTTGGATGGACAAGAGAGATAGGAG
CGGTGGAAAGGGTCTGGCGGCACATGACAACTCGGCACGGGGAGAGGGTG
GCGAGGCAGGCTCGAATAGCTAATGTTACGAGGACCCTTATGCAAGCGCT
TTGA
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