mRNA_H-paniculata_contig11267.811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11267.811.1
Unique NamemRNA_H-paniculata_contig11267.811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 7.120e-84
Identity = 194/405 (47.90%), Postives = 235/405 (58.02%), Query Frame = 2 
Query:  461 MCASAPPAEGFTPPGCLARV-------YSAERRLSAASSL--DGSDDGRRISQR-RSTGRRPSIFVAMPRNRGRRKRAVNSNSSGNSPAGLEMMSAVAPAPPAMDALEAAVAAATSTEQKSPQFVESLPRPPRSAKQKP--RFDESARYAERPSRLNV---LREDLAGVDLAKAIATEERLRNPLAVTASRGNRGRXXXXXXXXRKNVVDGPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            MCASAPPAEGFTPP CLARV       YSAERRL+A S    DG   GRR + R R     P    A+P    RR+          S A   M+   AP+  A   + +A  AA   E+     +++L  PP      P    D+S  Y E   +         D   V L K    +   R+                  XXX        L FYL+ + KV LLKPHEEI+LGRQIQ G+ YE  RDHLQL    +PT E+WA A+G++ E L++EL RA KAK AMLAANLRLVVS+AKRYR+  L+F DLIQEGTFGLVKA E+FDPERGFKFSTYATWWIKQSI RG++DQ R IRLPVHVH+ +  +RKAT E+TD  G  P+DE+L   L+ S  RI+
Sbjct:    1 MCASAPPAEGFTPPVCLARVCGAGDAFYSAERRLAAGSGAGRDGGSGGRRGTMRGREAAAAPVARGALPAPPTRRR----------STAARWMIQHPAPSRSAATRMMSAAVAAEPVEE-----LDTLRPPPPQLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTKKSAKRD-----------------GXXXXXXXXXDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQ 373
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.380e-74
Identity = 126/193 (65.28%), Postives = 153/193 (79.27%), Query Frame = 2 
Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            L FYL+ + KV LLKPHEEI+LGRQIQ G+ YE  RDHLQL    +P+ E+WA A+G++ E L++EL RA KAK AMLAANLRLVVS+AKRYR+  L+F DLIQEGTFGLVKA E+FDPERGFKFSTYATWWIKQSI RG++DQ R IRLPVHVH+ +  +RKAT E+TD  G  P+D++L   L+ S  RI+
Sbjct:   51 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQ 243
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.940e-60
Identity = 102/195 (52.31%), Postives = 140/195 (71.79%), Query Frame = 2 
Query: 1046 GPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            G L +YL  M  + LLKP EE+ LGR IQLG+ +EA ++ L +     P+  +WA  +G++ + L   + R+ +AK  M++ANLRL VSIAKRY+  GL  SDL+QEG+FGL+KA ERFDP++GFKFSTYATWWIKQSI R ++DQ R IRLPVHVH+L+ +I++AT+EL+   G  P+DE+L   LQ    +I+
Sbjct:   56 GALSWYLSRMSAIDLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKHRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIE 250
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.610e-58
Identity = 102/192 (53.12%), Postives = 136/192 (70.83%), Query Frame = 2 
Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARI 1627
            L+   K M  + LLKP EEI L RQI+LGI +EA R+ L +     P+  +WA  +G++ + L   + R+ +AK  M++ANLRL VSIAKRYR  GL   DLIQEG+FGL+KA ERFDPE+GFKFSTYATWWIKQSI R ++DQ R IRLPVHVH+ + ++++AT+EL+   G  P+DE+L   LQ +  +I
Sbjct:   17 LQHLFKRMTSIDLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYRRRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKI 208
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 204 bits (519), Expect = 5.150e-56
Identity = 98/192 (51.04%), Postives = 137/192 (71.35%), Query Frame = 2 
Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARI 1627
            +  YLK MG   LL+  EE+IL R IQ+ I++E VR+ L+      PT  +WA AV ++V  L R++ R+++AK A++ +NLRLVVSIAKRY   G+ F DL QEGT GL +ATE+FDPERGF+FSTYATWWIKQ I R ++DQ R IRLPVHVH+ +  +R+ TKEL++  G  P+DE++  + + +V ++
Sbjct:   90 ISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKL 281
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 200 bits (509), Expect = 8.990e-54
Identity = 94/193 (48.70%), Postives = 144/193 (74.61%), Query Frame = 2 
Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            L ++ K++G+ +LL+  EE++L R++Q  I +E VRD L+      PT E+WA +VG++ + L R+L R + AK+AM+++NLRLV+SIAKRY+  GL  +DLIQEG+ GLV+A E+FDPE+GFKFSTY+TWWIKQ+I R ++DQ R IRLPVH+H+L+ T++K T+EL  + G  P++E+L   +   + +++
Sbjct:  160 LGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLR 352
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.000e-53
Identity = 99/203 (48.77%), Postives = 144/203 (70.94%), Query Frame = 2 
Query: 1028 RKNVVDGPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRY--RWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            R+  VD  +K YLK+MG   LL   EE++L R +QL +++E VR+ L++  +  PT  +WA AVG++ ++L R++ R+++AK AM+ +NLRLV+SIAKRY  R   L+  DL QEG+ GLVKA E+FDPERGF+FSTYATWWIKQS+ R ++DQ R IRLPVH+H+ + T+RK  +ELT   G  P+ E++      +V +++
Sbjct:  167 RETGVD-TMKDYLKSMGNHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQ 368
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7S2SH06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH06_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.910e-53
Identity = 97/195 (49.74%), Postives = 138/195 (70.77%), Query Frame = 2 
Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAV--GIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            +K+YLK MG   LLK +EEIIL R+IQ+ I++E  R+ L+ +    PT  +WA AV  G+ V  + +++ R+ +AK A+  +NLRLV+SIAK+Y+  GLTF DL QEGT GL +A E+FDPERGF+FSTYATWWIKQ I R ++DQ R IRLPVH+H+ +  IRKA ++L +  G  P+ E+L  ++  +  +I+
Sbjct:  168 MKYYLKTMGNHELLKKNEEIILAREIQILIKWETQREELESSLMRPPTYAEWAAAVQKGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKKYQNRGLTFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLNMIRKAERDLHNELGRDPTKEELSHKINLTPEKIE 362
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.700e-52
Identity = 103/194 (53.09%), Postives = 139/194 (71.65%), Query Frame = 2 
Query: 1049 PLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARIK 1630
            PL  Y K + K+ LLKP EE++LGRQIQ G++ E VRD L+  + A P+ E+WA  + +  + L+REL  A +AK+ M++ANLRLVVS+A+ YR  GL F DLIQEGT GLVKA E+F+PE GF+F TYA WWIK+SI  G+++Q R IRLP  VH  +++IRK T ELT   G  P+DE+LG +L  +V +I+
Sbjct:  239 PLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYAQWWIKKSILTGIANQSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQ 431
[Close]
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Match: A0A7R9ZH78_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH78_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.530e-51
Identity = 98/211 (46.45%), Postives = 141/211 (66.82%), Query Frame = 2 
Query: 1052 LKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHLQLTYSADPTNEQWAYAV--GIEVERLMRELGRARKAKQAMLAANLRLVVSIAKRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQRGLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSVARI----KVSTVARTLECAL 1666
            +K+Y+K M    LLK +EEIIL R+IQ+ + +E  R+ L+      PT  +WA  +  G+ V  + R++ R+ +AK A+  +NLRLV+SIAKRY+  GL F DL QEGT GL +A E+FDPERGF+FSTYATWWIKQSI R ++DQGR IRLPVH+H+ +  IRK  ++L++  G  PS+E++   +     ++    KVS  + ++E  L
Sbjct:  125 MKYYMKTMANHDLLKKNEEIILAREIQILVAWEKKREDLEANLMRPPTYAEWAEDIREGMTVPEMKRQIRRSLRAKSALTESNLRLVISIAKRYQNRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLNVIRKVERDLSNELGREPSNEEVAGRVDLKPEKVEFLKKVSKHSLSMETQL 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11267.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3H4_9PHAE7.120e-8447.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI6_ECTSI3.380e-7465.28Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
A0A835ZES3_9STRA3.940e-6052.31RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835ZBY3_9STRA5.610e-5853.13RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2KJI8_9STRA5.150e-5651.04Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WX55_9STRA8.990e-5448.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1B782_9STRA1.000e-5348.77Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2SH06_9STRA1.910e-5349.74Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6H5KA31_9PHAE1.700e-5253.09RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
A0A7R9ZH78_9STRA1.530e-5146.45Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11267contigH-paniculata_contig11267:285..5070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.0
Seed ortholog evalue1.9e-66
Seed eggNOG ortholog2880.D8LNI6
Hectar predicted targeting categorychloroplast
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
Ec32 ortholog descriptionRNA polymerase sigma-70 region 3
Ec32 orthologEc-24_002980.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1813
Cds size1263
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11267.811.1prot_H-paniculata_contig11267.811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11267 417..4652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.1145985-UTR-H-paniculata_contig11267:284..4161622928830.1145985-UTR-H-paniculata_contig11267:284..416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11267 285..416 -
1691480637.4072323-UTR-H-paniculata_contig11267:284..4161691480637.4072323-UTR-H-paniculata_contig11267:284..416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11267 285..416 -
1622928830.2037504-UTR-H-paniculata_contig11267:4652..50701622928830.2037504-UTR-H-paniculata_contig11267:4652..5070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11267 4653..5070 -
1691480637.45591-UTR-H-paniculata_contig11267:4652..50701691480637.45591-UTR-H-paniculata_contig11267:4652..5070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11267 4653..5070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.126746-CDS-H-paniculata_contig11267:416..6141622928830.126746-CDS-H-paniculata_contig11267:416..614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11267 417..614 -
1691480637.4170449-CDS-H-paniculata_contig11267:416..6141691480637.4170449-CDS-H-paniculata_contig11267:416..614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11267 417..614 -
1622928830.1383986-CDS-H-paniculata_contig11267:2808..37791622928830.1383986-CDS-H-paniculata_contig11267:2808..3779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11267 2809..3779 -
1691480637.424959-CDS-H-paniculata_contig11267:2808..37791691480637.424959-CDS-H-paniculata_contig11267:2808..3779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11267 2809..3779 -
1622928830.1925993-CDS-H-paniculata_contig11267:4558..46521622928830.1925993-CDS-H-paniculata_contig11267:4558..4652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11267 4559..4652 -
1691480637.4382126-CDS-H-paniculata_contig11267:4558..46521691480637.4382126-CDS-H-paniculata_contig11267:4558..4652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11267 4559..4652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11267.811.1

>prot_H-paniculata_contig11267.811.1 ID=prot_H-paniculata_contig11267.811.1|Name=mRNA_H-paniculata_contig11267.811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=421bp
MCTSRRWRVCVVGAMCASAPPAEGFTPPGCLARVYSAERRLSAASSLDGS
DDGRRISQRRSTGRRPSIFVAMPRNRGRRKRAVNSNSSGNSPAGLEMMSA
VAPAPPAMDALEAAVAAATSTEQKSPQFVESLPRPPRSAKQKPRFDESAR
YAERPSRLNVLREDLAGVDLAKAIATEERLRNPLAVTASRGNRGRGAGGG
GGGRKNVVDGPLKFYLKNMGKVALLKPHEEIILGRQIQLGIRYEAVRDHL
QLTYSADPTNEQWAYAVGIEVERLMRELGRARKAKQAMLAANLRLVVSIA
KRYRWLGLTFSDLIQEGTFGLVKATERFDPERGFKFSTYATWWIKQSIQR
GLSDQGRAIRLPVHVHNLMATIRKATKELTDAYGNPPSDEQLGRELQTSV
ARIKVSTVARTLECALVFPV*
back to top

mRNA from alignment at H-paniculata_contig11267:285..5070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11267.811.1 ID=mRNA_H-paniculata_contig11267.811.1|Name=mRNA_H-paniculata_contig11267.811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4786bp|location=Sequence derived from alignment at H-paniculata_contig11267:285..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCACCGCAGCTCGTGCGTGCTCTTGAATGCTACACCTGGCACCTTTG
GGTTGCCATCCCATCCCTTGAATTCGAGGACACTACTGCAGTTGTGGTAG
TACAGACAACGTGGGTTCCAAGGGGCTACGTACCTAGCCGATTGTCAAGG
TCAAACAGTACGAGCCCCACTCCCCATCAACGCACGAGCCGACAGGTCAG
CGTAAGGGGAAGGGGGGCTGAATCCAGGCACCGCTCTCGTTAGGAAGGAA
TACAGGAAGCTCTAGCATTCGGTGGATACGTAAATCAGGAGTTTTGCGGG
GTTCTTTAAGAGCGCTCAGGAAGCTCTGGGTAGCCATTGCAGGGGAGTGG
GGCGCCGGCTGCCGACAACAGTGCGCAATTGGAGTTGAACAGAGGACTAC
GTATAGAAACTAACTAGTATGTGCACCAGTCGAAGATGGAGGGTATGTGT
GGTTGGTGCAATGTGCGCCTCAGCACCCCCTGCAGAGGGTTTCACGCCAC
CAGGTTGCTTGGGTGAGTGGGTTCTCGGGAGGAGGCTATGCTTATCGGTG
GTGTTTCCATGTCCGTAAGAATGTGCTCTATAAACTCCTTGTTTTATGCC
GCGCTCGGTTTTGAAACTGTCTGTGAGAGCGCAATCTTACCAGAGTCATT
TGTTTTTTGTCCCACCTTGATGTGCTCTGACGCAATTCACCGCTCTGAGA
CAATTGCTGACTGTCTGTTGTGGAGCGGCTGGAGGATGAAGTTTAGGAGA
GATGTACAAAACACTTATCACTGTGCAATAATGCTTGCGTGAAAGCGGTA
GCTTGTATGGTAGTGCGTTTCTTGGTGGCTGCACCCGTCTCTTGTCATAC
AGGCCCACTACAATGCTGACTATACTGCACGGTACCGAAAGTCTGAGTGG
TGCAGAGAGTAAATTGTCCTTCTCGCATCCTTGATTTGAACTTCCGACTA
GGGGTTCATGTCGGACGCCGTACACAGCGTTCTTCTCAACCGTTTTACAG
TGCTGCAACCAATGCAAGCGGTTCAACATGCACCTGGCCGACCTTTCTTC
CAACAATCCTGTAGCGATCCTGTAGCGTCCTATTATTACTGTTCACGCAA
AAAGCATGCCAGGCAACATAACAGCGTCATACCAGACACGGTCAAGTGAA
TGTTCGACATTGCCCCGTATTTCGTCAAGAACCCGATCCAGCACCCAGTC
TATCTGATTTATCAACACACTGCCGCCTCGCTCTTCCCGTTTACCCATTT
CCTCCCTCTTTCTAAAAAACTTCTACCCGCCGGCTTTTCAGCCCGCGTGT
ACTCGGCGGAACGGCGATTGTCAGCGGCTTCTTCACTCGATGGGTCAGAT
GACGGAAGACGGATATCACAGCGGCGTAGTACAGGCAGGAGACCATCTAT
TTTCGTCGCGATGCCGAGAAACAGGGGTCGGCGAAAGAGGGCGGTCAACA
GCAATAGCAGTGGCAACTCTCCGGCGGGGTTAGAAATGATGTCTGCTGTG
GCCCCAGCACCCCCAGCCATGGACGCACTAGAAGCAGCAGTAGCAGCAGC
AACATCAACAGAGCAAAAATCGCCGCAGTTCGTGGAGTCGCTGCCGCGGC
CGCCGAGATCGGCAAAGCAAAAGCCTCGATTTGACGAATCAGCGAGGTAC
GCAGAGCGACCATCACGGCTCAACGTGCTACGGGAAGATTTGGCTGGTGT
TGATTTGGCGAAGGCGATAGCCACAGAGGAGAGGCTACGGAATCCGCTGG
CGGTGACGGCGAGCCGGGGGAACCGTGGCAGAGGGGCCGGGGGGGGGGGG
GGTGGGAGGAAAAATGTCGTGGATGGACCTTTGAAGTTTTATCTCAAAAA
CATGGGGAAAGTGGCTCTGCTCAAGCCGCACGAGGAGATCATTCTGGGCA
GGCAGATTCAGCTGGGGATTCGATACGAAGCAGTGCGAGATCACTTGCAG
TTGACGTACAGCGCCGATCCTACTAACGAACAGTGGGCGTATGCCGTAGG
CATTGAGGTGGAGAGGCTCATGCGCGAGCTGGGGCGAGCGCGGAAAGCGA
AACAAGCAATGCTCGCTGCGAATCTCCGGCTTGTCGTCAGCATCGCCAAG
CGTTACCGGTGGCTGGGACTGACGTTCTCTGATCTGATTCAGGAGGGCAC
CTTCGGGCTAGTCAAGGCTACGGAGAGGTTTGATCCCGAGCGGGGATTCA
AGTTTTCGACGTACGCTACTTGGTGGATCAAGCAGAGCATTCAGCGAGGC
CTCTCTGACCAGGTGAAAAATTGGGTGCAGCGCTTTCTGCGTTAGTCTCT
CTACGGCTGGTGTTTAGCTTGTGTATTAATTTTCGTCTAAGTCTTTTGTC
TAAACCGTGGCCATGTTGTATTTCCTGTTTCCGCATCTCTTGATTTTGTC
CACCGATCGCATTCCCATTTAAGTTGTGCGCTGATAACGGGGACCTTGAG
TGCTGTGCGCAGGCAATAGCCAAAGGGCCTAGTTTTTTAATTTTCACCTC
GAGCCCAAGTGCTCTGACACGGTGGATCCCACTTCAAGTGGCGGTGTACC
TCCTTTTCGAAGGCAGCAGTAGCACACGGTTGATCGATTGGATACCTCCG
TTAGCCGGAGCGCTTGGACCTGGAAGGCTCTAATTTCAACATCTTGTCGG
TCCTAGCGACCGGGGCCGCGTAGCTCCGTCACTCTTCGCGTACACGAGAG
AACACTGGAGTGCGACTACTAGAGTATGACTTATCTGCTACGCGGCCTCG
TTGGTCAGCGAACATGTCTCCCCCTAAAGCTTGGGTCGCGGAGCTTCTCA
GTCGAATATAGCGATCCTGAAGCGATTGCCGTTCATAGGGGTTGCTAAGA
AATTGTCTCTTGGTCGGCGTTGTAAACAGACACTCATTACCCTACATGCG
CCGAATGCTATTATACAATGGGTCAATAATTTTCTCGCAGATGTTAGGGA
TGGGATATCGAGCAGCATCAGTATATAGTCTGAGCAGCCTTTCTTTTCTC
GGTGCCCTGCTCGGCACCGTGGCTGCGATTGATGACCAAAATCTCAACCT
GGCATCACTTCGAATTCATGTATTACCGAGGCATATTGCTTATAGGATCA
ATTTGTTGCTGTACCGGGGGGCGAAAGCCTGACCTCGTTCCAACTACCCA
GTTTGCAGAACTGATACTTGTGAAATCGTCTCAGCAATGGGGTGTGCACC
CACGTCTCGGTTTTCGATGTAACCCCGTGATCGTGGAGCTACGTCAAGCT
GATTCCGGCTATACAGCGCAGTCTTGGAAAATGAAAAAAAACAAAAGAAA
AACGGTTTATTTTTCAATATATTCGGGCACAACAATCTTGGTATCTGTTT
TATCATCGGAGAGAAGAGGTCTGAACTTGTTCCACCGACCCAACATGCGT
AACGATGTGTGTAGAACCGTCTCAATCATGTGGTGTCTACCCGCGTTTCG
TTTTTCGATTCAACTACTGTGATGGTGGAGATACACCGAGTTGAATCAGA
GGACATGGTGCGCAAGAGCAATAGATTGCTTCTTCTTAATAACTGTGCTC
CCGTGGTAGGAGAAGCTGCGAAGCAGTAATTTTTTTTGCTTTGAGAGACA
ACGAGTGCCAACATTTGCTATACTGGATGTGGAAGCAGCGGAAAAGGTTT
TTACCTCAGCCTTCCGGGGGTTAAAAAACAAAACAAAAAAAAACAAACAC
ATTTGCTATACTGCACTCAAATCACGCTCCCAGAAACAGCTGCGATCGGA
CAATGAATGACATTGGTATAGCCTCGGCATTCCTTATTTTTTTTACGTTT
TGCCCGGTGTGCGGAGTAATGACAAAGCTGTACGTACGCACACGGCTTTC
TCACACCCTCGGCTGTGGGCTGTTTCGCTTCCTTTCTCTGCGTTTGTTAC
ACTCAAACGGTGAATGAACGGCTCCGAGGCACAAGTGATGCGCTCTGTGA
ACTATCCTAAAACCTGCCTGTAGAGCAGCTATCTCTCTTTGGAAAGACGT
GGCGAATCGAGAGACGTAGTTAATTATTTCTGTAGTAAAAAAAATGTGTT
ACCGGTCTCAAGCGGTTTCATTCTGTCCGAGAGTCCCGCGGTAGCATGTA
GCTAGCAGCACAGATCGCTGTCAGAGGAAGGAGTTTCATCGTTTTGTTGT
TGATTGGTTTCGGTCCGAATACACACACGCTCACATACTGCTTTGTATTG
CGTGATGACGCGGCGTTGGAAATTACGATACGATGTGCTTCTCTGGAAGC
AGCGGACAAGGTTTTTACCTCAGCCTTCCGGGGGTTAAAAAATACAAAAC
AAAAAAAAAACCCGATGTGCTTCTCGTCATTGTCATCACCGCACCTGTCT
TCCTCTTCTTCCCACCCTTGGATTTTTCCGTTATTGTGTTTGTTTTTCGT
ATTGCCCGCCATTTCCCGTGGCCTTGGTCTTTCGCTTCCTGTGTGACTCT
GTGCAGGGCCGAGCGATCCGATTGCCAGTGCACGTTCACAACTTGATGGC
GACGATACGAAAAGCCACGAAGGAGTTGACCGATGCGTACGGGAACCCTC
CTTCGGACGAGCAGCTGGGCAGGGAATTGCAGACGAGTGTGGCGAGGATT
AAGGTTAGTACTGTCGCAAGAACGCTCGAGTGTGCACTAGTATTTCCGGT
GTAGATATATTTGTCCTGGCATGCAAGGATCTTCTTCTAGAGAGAACATG
TGTTGGTATGTAGAAGCTTTGTTCGGCATTGTATTCTTGAAACTTACGAA
GTATCGCTCAACCGTGTGTAATCGCAGTCCGTGTAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11267:285..5070-

>mRNA_H-paniculata_contig11267.811.1 ID=mRNA_H-paniculata_contig11267.811.1|Name=mRNA_H-paniculata_contig11267.811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at H-paniculata_contig11267:285..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCACCAGTCGAAGATGGAGGGTATGTGTGGTTGGTGCAATGTGCGC
CTCAGCACCCCCTGCAGAGGGTTTCACGCCACCAGGTTGCTTGGATGTGC
ACCAGTCGAAGATGGAGGGTATGTGTGGTTGGTGCAATGTGCGCCTCAGC
ACCCCCTGCAGAGGGTTTCACGCCACCAGGTTGCTTGGCCCGCGTGTACT
CGGCGGAACGGCGATTGTCAGCGGCTTCTTCACTCGATGGGTCAGATGAC
GGAAGACGGATATCACAGCGGCGTAGTACAGGCAGGAGACCATCTATTTT
CGTCGCGATGCCGAGAAACAGGGGTCGGCGAAAGAGGGCGGTCAACAGCA
ATAGCAGTGGCAACTCTCCGGCGGGGTTAGAAATGATGTCTGCTGTGGCC
CCAGCACCCCCAGCCATGGACGCACTAGAAGCAGCAGTAGCAGCAGCAAC
ATCAACAGAGCAAAAATCGCCGCAGTTCGTGGAGTCGCTGCCGCGGCCGC
CGAGATCGGCAAAGCAAAAGCCTCGATTTGACGAATCAGCGAGGTACGCA
GAGCGACCATCACGGCTCAACGTGCTACGGGAAGATTTGGCTGGTGTTGA
TTTGGCGAAGGCGATAGCCACAGAGGAGAGGCTACGGAATCCGCTGGCGG
TGACGGCGAGCCGGGGGAACCGTGGCAGAGGGGCCGGGGGGGGGGGGGGT
GGGAGGAAAAATGTCGTGGATGGACCTTTGAAGTTTTATCTCAAAAACAT
GGGGAAAGTGGCTCTGCTCAAGCCGCACGAGGAGATCATTCTGGGCAGGC
AGATTCAGCTGGGGATTCGATACGAAGCAGTGCGAGATCACTTGCAGTTG
ACGTACAGCGCCGATCCTACTAACGAACAGTGGGCGTATGCCGTAGGCAT
TGAGGTGGAGAGGCTCATGCGCGAGCTGGGGCGAGCGCGGAAAGCGAAAC
AAGCAATGCTCGCTGCGAATCTCCGGCTTGTCGTCAGCATCGCCAAGCGT
TACCGGTGGCTGGGACTGACGTTCTCTGATCTGATTCAGGAGGGCACCTT
CGGGCTAGTCAAGGCTACGGAGAGGTTTGATCCCGAGCGGGGATTCAAGT
TTTCGACGTACGCTACTTGGTGGATCAAGCAGAGCATTCAGCGAGGCCTC
TCTGACCAGCCCGCGTGTACTCGGCGGAACGGCGATTGTCAGCGGCTTCT
TCACTCGATGGGTCAGATGACGGAAGACGGATATCACAGCGGCGTAGTAC
AGGCAGGAGACCATCTATTTTCGTCGCGATGCCGAGAAACAGGGGTCGGC
GAAAGAGGGCGGTCAACAGCAATAGCAGTGGCAACTCTCCGGCGGGGTTA
GAAATGATGTCTGCTGTGGCCCCAGCACCCCCAGCCATGGACGCACTAGA
AGCAGCAGTAGCAGCAGCAACATCAACAGAGCAAAAATCGCCGCAGTTCG
TGGAGTCGCTGCCGCGGCCGCCGAGATCGGCAAAGCAAAAGCCTCGATTT
GACGAATCAGCGAGGTACGCAGAGCGACCATCACGGCTCAACGTGCTACG
GGAAGATTTGGCTGGTGTTGATTTGGCGAAGGCGATAGCCACAGAGGAGA
GGCTACGGAATCCGCTGGCGGTGACGGCGAGCCGGGGGAACCGTGGCAGA
GGGGCCGGGGGGGGGGGGGGTGGGAGGAAAAATGTCGTGGATGGACCTTT
GAAGTTTTATCTCAAAAACATGGGGAAAGTGGCTCTGCTCAAGCCGCACG
AGGAGATCATTCTGGGCAGGCAGATTCAGCTGGGGATTCGATACGAAGCA
GTGCGAGATCACTTGCAGTTGACGTACAGCGCCGATCCTACTAACGAACA
GTGGGCGTATGCCGTAGGCATTGAGGTGGAGAGGCTCATGCGCGAGCTGG
GGCGAGCGCGGAAAGCGAAACAAGCAATGCTCGCTGCGAATCTCCGGCTT
GTCGTCAGCATCGCCAAGCGTTACCGGTGGCTGGGACTGACGTTCTCTGA
TCTGATTCAGGAGGGCACCTTCGGGCTAGTCAAGGCTACGGAGAGGTTTG
ATCCCGAGCGGGGATTCAAGTTTTCGACGTACGCTACTTGGTGGATCAAG
CAGAGCATTCAGCGAGGCCTCTCTGACCAGGGCCGAGCGATCCGATTGCC
AGTGCACGTTCACAACTTGATGGCGACGATACGAAAAGCCACGAAGGAGT
TGACCGATGCGTACGGGAACCCTCCTTCGGACGAGCAGCTGGGCAGGGAA
TTGCAGACGAGTGTGGCGAGGATTAAGGTTAGTACTGTCGCAAGAACGCT
CGAGTGTGCACTAGTATTTCCGGTGTAGGGCCGAGCGATCCGATTGCCAG
TGCACGTTCACAACTTGATGGCGACGATACGAAAAGCCACGAAGGAGTTG
ACCGATGCGTACGGGAACCCTCCTTCGGACGAGCAGCTGGGCAGGGAATT
GCAGACGAGTGTGGCGAGGATTAAGGTTAGTACTGTCGCAAGAACGCTCG
AGTGTGCACTAGTATTTCCGGTGTAG
back to top