mRNA_H-paniculata_contig29842.8105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29842.8105.1
Unique NamemRNA_H-paniculata_contig29842.8105.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A2N9EUJ4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUJ4_FAGSY)

HSP 1 Score: 241 bits (616), Expect = 9.750e-69
Identity = 134/347 (38.62%), Postives = 206/347 (59.37%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRK-LKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEYEIKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAP-------EGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSIG 1017
            W  AM EE  +L +N+TWE  +   LP G+K I  +W+ K+K    +    R+ ARLVA+G+S   G D+ E  +PV R +++R V  LV + D ELE +DV  A+L+  +EEE+F++ P  +++K  + + F  KDLG+  ++LG+E+RRDR    + + Q +YI +VL+++   + + V TP+    ++ +        E  + +   Y   VG LMYA   TRPD+A+AV   +R M +P +E +   K  F YL    + GI F  +   +S+ G+VDAD A +V+DR+STTGYVF L+GG I W S  Q IV  S+TEAEY+A  +  KE ++L  L+  +G
Sbjct:  633 WMEAMVEENESLSKNKTWELTE---LPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSSSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEYGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLNGLVKELG 976          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A438C1R6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C1R6_VITVI)

HSP 1 Score: 234 bits (597), Expect = 3.140e-66
Identity = 135/351 (38.46%), Postives = 201/351 (57.26%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFV------KLPPEYEIKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAPEGRSG-------NSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSI 1014
            W  AM++E  +L+ N+TWE  +   LP G+KA+  +W+ + K + DGS  RY ARLV +GF   EG D+ E  +PV +MST+R V  +V   +  LE +DV  A+L+  +EE+L++       +     +K  +S++F  KDLG+  ++LG+ + RD+ NGT+ + Q  Y+ +VL R+   E + V TP+    ++   +           +   Y   +G LMYA   TRPDIA+AV   +R M  P ++ +   K    YL    D  + F G S    L+G+VDAD A D++ RKSTTG+VF L G AI W S  Q+IVT S+TEAEYVAA + GKE ++L   L  +
Sbjct:  600 WELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIHQKGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASL--KLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDEL 944          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A438GE57_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GE57_VITVI)

HSP 1 Score: 231 bits (589), Expect = 7.000e-66
Identity = 135/359 (37.60%), Postives = 203/359 (56.55%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEY--------------EIKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQI-------LAPEGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSI 1014
            W  AM++E  +L+ N+TWE  +   LP G+KA+  +W+ + K + DGS  RY ARLV +GF   EG D+ E  + V +MST+R V  +V   +  LE +DV  A+L+  +EE+L++  P E+               +K  +S++F  KDLG+  ++LG+ + RD+PNGT+ + Q  Y+ +VL R+   E + V TP+    ++       +  E    +   Y   +G LMYA   TRPDIA+AV   +R M    ++ +   K    YL    D  + F G S    L+G+VDAD A+D++ RKSTTG+VF L G  I W S  Q+IVT S+TEAEYVAA + GK+ ++L   L  +
Sbjct:  217 WELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFHQKEGIDYTEIFSLVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEEFIVQGQERSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKPNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKIEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVKVVSRFMSRLEKQHWEAIKWILRYLKGSLDTCLCFTGASL--KLQGYVDADFADDIDSRKSTTGFVFTLGGTTISWTSNLQKIVTLSTTEAEYVAATKAGKKMIWLHGFLDEL 569          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A699GM13_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GM13_TANCI)

HSP 1 Score: 229 bits (585), Expect = 7.240e-66
Identity = 130/343 (37.90%), Postives = 197/343 (57.43%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLP-----PEYEIKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAPEGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSI 1014
            W+ A+E+E G+++EN TW   D   LP G K +  +WI KRK+K DG++ ++ A LV QGF   EG D+F+T APVAR++T+R    +   H+  +  MDV   +LN  ++E++++K P     P  + K  +S RF  KD+G    +LGI+++R+  N  I I Q  YI ++LK++   +C  V TP++   ++    G+  +  EY   +G LMYA T TR DIAYAV + +R   +P ++ +      F YL    +  +S+    +   LEG+ DA     VED  ST+ +VF L GGAI W S+KQ  +T S+ E E+VA    GKE  +LR L+  I
Sbjct:  345 WKEAIEDEIGSIMENNTWVLSD---LPRGYKPLGCKWIFKRKMKVDGTIDKFKAPLVVQGFRQTEGIDYFDTYAPVARITTIRLFLAIPAIHNLVIHQMDVKTTFLNGDLDEKVYMKQPKGFFMPVDKTKKFLSSRFSMKDMGETDDILGIKIKRE--NKRIVITQSHYIEKILKKFNREDCSPVSTPMDPVEKLKLNTGKPIDQLEYSKAIGCLMYAMTSTRLDIAYAVGRLSRFTSNPSRQLWKAITRVFKYLRGTKNYSLSYVRYPS--VLEGYSDASWINHVEDSSSTSRWVFLLGGGAISWASKKQTCITGSTMEYEFVALAAAGKEAEWLRNLIHEI 680          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA)

HSP 1 Score: 229 bits (585), Expect = 5.680e-64
Identity = 140/368 (38.04%), Postives = 202/368 (54.89%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEYE------------------------------IKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAPEGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSI 1014
            WR AM +E  ++ +N TWE     +LP G K I  +W+ K KLKE+G V +Y ARLVA+G+    G D+ E  APVAR+ T+R V  L  + ++ +  +DV +A+L+  +EEE+FV  PP YE                               K +++  F   DLG +   LGIEV + R +G + I Q  Y  E+L+++   +C  V  PV   +++   EG   +ST YR MVG LMY  T TRPD+ + V   +R ME P +E     K    Y+    DLGI F  K     L G+ D+D A D +DRKST+GYVF ++ GA+ W S+KQ +VT S+TEAE++AA     + V+LR ++ S+
Sbjct:  956 WRHAMNQEIQSIEKNDTWELV---KLPPGGKTIGVKWVFKTKLKENGEVDKYKARLVAKGYCQQYGIDYAEVFAPVARLDTIRVVISLAAQKNWGIYQLDVKSAFLHGEIEEEVFVDQPPGYEQKGQESKILIACLYVDDLIFTGNDETMFEKFKKSMTAEFDMTDLGKMRYFLGIEVIQ-RSDG-VFIGQRKYAQEILEKFNMEQCNPVQNPVVPGLKLTKNEGVEVDSTVYRQMVGSLMYL-TATRPDLMFVVSLISRYMERPTEEHLQVAKKVLRYVKGTVDLGI-FYKKGGTEELTGYTDSDYAGDQDDRKSTSGYVFMISSGAVSWSSKKQPVVTLSTTEAEFIAAASSACQVVWLRRIMESL 1316          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 228 bits (581), Expect = 1.900e-63
Identity = 140/424 (33.02%), Postives = 208/424 (49.06%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEYEIKHN-----------------------------------------------------------------------------------ISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQI--LAPEGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSIG 1017
            W+ A + E+ AL+EN TWE   P   P  +  + ++W+ K K K DGSV ++ ARLVAQG+S  EG D+ E  +PV R +++R++  L    D+E+  MDV  A+L   + +E+++K P  Y  K N                                                                                   I  +F+ +DLG +S +LG+ ++RDR + T+TI Q  Y+  VLKR+   EC+ V TP+E   Q   L+ + R  N  EY+ ++G L Y +T TRPD+A AV   ++ M  P QE +   K    Y+    + GI+F  K     L G+ DAD A D E R+ST+GY+F+++G  I WCS+KQ  V+ SSTEAEY+A     +E ++LR LL +IG
Sbjct:  848 WKKATDSEFNALMENGTWELVPP---PDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIG 1268          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A2N9GEP0_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GEP0_FAGSY)

HSP 1 Score: 222 bits (566), Expect = 5.920e-63
Identity = 131/360 (36.39%), Postives = 202/360 (56.11%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRK-LKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEYE-------------IKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAP-------EGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSIG 1017
            W  AM EE  +L +N+TWE  +   LP G+K I  +W+ K+K    +    R+ ARLVA+G+S   G D+ E  +PV R +++R V  LV + D ELE +DV  A+L+  +EEE+F+  P  ++             +K  + + F  KDLG+  ++LG+E+ RDR    + + Q +YI +VL+++   + + V T +    ++          E  + +   Y   VG LMYA   TRPD+A+AV   +R M +P +E +   K  F YL    + GI F  +   +S+ G+VDAD A +V+DR+STTGYVF L+ G I W S  Q IV  S+TEAEY+A  +  KE ++L+ L+  +G
Sbjct:  301 WMEAMVEENESLSKNKTWELTE---LPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQPGTENLVCRLKKLKSLLYKEFEMKDLGAAKKILGMEIHRDRDARKLWLSQKNYIKKVLEKFSMLDAKPVSTSLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSEGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELG 657          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A438CBM2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CBM2_VITVI)

HSP 1 Score: 224 bits (571), Expect = 1.510e-62
Identity = 134/379 (35.36%), Postives = 202/379 (53.30%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEY---------------------------------EIKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAPEGRSG-------NSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSIG 1017
            W  AM++E  +L+ N+TWE  +   LP G+KA+  +W+ + K + DGS  RY A+LV +GF   EG D+ E  +PV +MST+R V  +V   +  LE +DV  A+L+  +EE+L++  P  +                                  +K  +S++F  KDLG+  ++LG+ + RD+ NGT+ + Q  Y+ +VL R+   E + V TP+    ++   +           +   Y   +  LMYA   TRPDIA+AV   +R M  P ++ +   K    YL    D  + F G +    L+G+VDAD A D++ RKSTTG+VF L G AI W S  Q+IVT S+TEAEYVAA + GKE ++L   L  +G
Sbjct:  572 WELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKAKLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLNKLLDSGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIDSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGANL--KLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELG 944          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A2N9EIR8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIR8_FAGSY)

HSP 1 Score: 225 bits (573), Expect = 1.750e-62
Identity = 134/375 (35.73%), Postives = 206/375 (54.93%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRK-LKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEYE----------------------------IKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAP-------EGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLRELLGSIG 1017
            W  AM EE  +L +N+TWE  +   LP G+K I  +W+ K+K    +    R+ ARLVA+G+S   G D+ E  +PV R +++R V  LV   D ELE +DV  A+L+  +EEE+F++ P  ++                            +K  + + F  KDLG+  ++LG+E+RRDR    + + Q +YI +VL+++   + + V TP+    ++ +        E  + +   Y   VG LMYA   TRPD+A+AV   +R M +P +E +   K  F YL    + GI F  +   +S+ G+VDAD A +V+DR+STTGYVF L+GG I W S  Q IV  S+TEAEY+A  +  KE ++L+ L+  +G
Sbjct:  707 WMEAMVEENESLSKNKTWELTE---LPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLTLVANQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPDGSYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSSSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPRREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAIAEAAKEALWLKGLVKELG 1078          
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 225 bits (574), Expect = 1.750e-62
Identity = 137/363 (37.74%), Postives = 190/363 (52.34%), Query Frame = 1
Query:    1 WRAAMEEEWGALVENRTWESEDPGRLPAGRKAIRTQWICKRKLKEDGSVARY*ARLVAQGFS*VEGEDFFETSAPVARMSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEE------LFVKLPPEY----------------------EIKHNISQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECRGVPTPVEGKVQILAPEGRSGNSTE-YRGMVGLLMYASTGTRPDIAYAVHQAARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAIRWCSRKQQIVTWSSTEAEYVAAGQVGKETVYLREL 1002
            W+ AM++E  +L+ N TW   +P   P G K I  +W+ K K   +G++ RY ARLV QGF   EG D+ E  APV++ STLRTV       D +L  +D+  A+LN  ++EE      LF+   P                         IK  +   F  +DL + +  LG+++ RDR   TI + Q   I ++L +YG  + +   TP    +++          T  Y  +VG LMY S  TRPDIA AV   AR M +P  + +   K    YL+  PD+GI+FG  S G  L+ F DAD A D++ R+STTGY F  NGGAI W SR Q  V  S+TEAEY+AA    KE ++LR+L
Sbjct:  612 WQLAMDDEMASLIANDTWTLCEP---PHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYADAGLFISTDPSKLAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLDNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKYGMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKL 969          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29842.8105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9EUJ4_FAGSY9.750e-6938.62Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A438C1R6_VITVI3.140e-6638.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GE57_VITVI7.000e-6637.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A699GM13_TANCI7.240e-6637.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5G876_9ROSA5.680e-6438.04Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A7D9IUY0_PARCT1.900e-6333.02Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2N9GEP0_FAGSY5.920e-6336.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A438CBM2_VITVI1.510e-6235.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9EIR8_FAGSY1.750e-6235.73Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29842contigH-paniculata_contig29842:1..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score106.3
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog7029.ACYPI067527-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38VJ1@33154,3CB3U@33208,3DT1J@33213,3EE1Z@33342,3SW1M@50557,4294G@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons3
Model size1020
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29842.8105.1prot_H-paniculata_contig29842.8105.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29842 235..1152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.3567286-UTR-H-paniculata_contig29842:0..2341622929911.3567286-UTR-H-paniculata_contig29842:0..234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29842 1..234 +
1691481065.9541452-UTR-H-paniculata_contig29842:0..2341691481065.9541452-UTR-H-paniculata_contig29842:0..234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29842 1..234 +
1622929911.439515-UTR-H-paniculata_contig29842:1152..13411622929911.439515-UTR-H-paniculata_contig29842:1152..1341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29842 1153..1341 +
1691481066.0017357-UTR-H-paniculata_contig29842:1152..13411691481066.0017357-UTR-H-paniculata_contig29842:1152..1341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29842 1153..1341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.3725214-CDS-H-paniculata_contig29842:234..3641622929911.3725214-CDS-H-paniculata_contig29842:234..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29842 235..364 +
1691481065.9665146-CDS-H-paniculata_contig29842:234..3641691481065.9665146-CDS-H-paniculata_contig29842:234..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29842 235..364 +
1622929911.390169-CDS-H-paniculata_contig29842:604..8211622929911.390169-CDS-H-paniculata_contig29842:604..821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29842 605..821 +
1691481065.975518-CDS-H-paniculata_contig29842:604..8211691481065.975518-CDS-H-paniculata_contig29842:604..821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29842 605..821 +
1622929911.4074848-CDS-H-paniculata_contig29842:902..11521622929911.4074848-CDS-H-paniculata_contig29842:902..1152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29842 903..1152 +
1691481065.984462-CDS-H-paniculata_contig29842:902..11521691481065.984462-CDS-H-paniculata_contig29842:902..1152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29842 903..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29842.8105.1

>prot_H-paniculata_contig29842.8105.1 ID=prot_H-paniculata_contig29842.8105.1|Name=mRNA_H-paniculata_contig29842.8105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MSTLRTVFCLVVEHDFELEGMDVDAAYLNAPVEEELFVKLPPEYEIKHNI
SQRFRTKDLGSLSRVLGIEVRRDRPNGTITILQGSYICEVLKRYGFYECR
GVPTPVEGKVQILAPEGRSGNSTEYRGMVGLLMYASTGTRPDIAYAVHQA
ARRMEDPCQEDFGTCKHNFLYLSTMPDLGISFGGKSNGHSLEGFVDAD*
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mRNA from alignment at H-paniculata_contig29842:1..1341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29842.8105.1 ID=mRNA_H-paniculata_contig29842.8105.1|Name=mRNA_H-paniculata_contig29842.8105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-paniculata_contig29842:1..1341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATCGGAC ATGGGAAAGCGAAGACCCAGGGAGGTTACCGGCAGGGCGGAAGGCGATTC GTACACAATGGATTTGCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCA CGCTACTAAGCGCGACTGGTGGCTCAAGGTTTTTCCTAGGTGGAGGGTGA AGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTA CTGTTTTTTGCCTGGTCGTAGAACATGATTTCGAATTAGAAGGCATGGAC GTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAA GCTACCCCCCGAGTGTTCCCCTTTATCCCTAGACATACCATTTTGTGCGC CGCCTGCGTAAAAGCCTATACGGCCTCAAGCAGAGCGGCCGAACTGGAAT AACACTCTTGACGATGTTCTTGTTGGGATAAGACTCGACCGTTCCATTAC CGACTCATGCCTGTACTTTTCACGCGACGAAGGGGGAGAGACAAACCTTC TGGTGGCCGTGTATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAAC GTAGACGAGATCAAGCATAACATAAGTCAGCGTTTTAGGACGAAAGATTT GGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTA ATGGTACCATAACCATTTTGCAGGGTAGCTATATCTGCGAGGTACTAAAA AGATACGGTTTTTACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAA AGTGCAGATCTTGGCACCAGAGTCGGCCGACAAGCCCTCCGAACCGAAGT CACTTGGAGCTATACTGTTGGACATAGGCGCAGGAGTACAAGAAAGCAGC AGAGGGAGAAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGATTACT CATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCTGTACACC AAGCAGCACGTCGTATGGAGGACCCATGTCAAGAAGACTTCGGTACATGC AAGCACAATTTTCTTTATCTCAGTACTATGCCTGACCTCGGCATTTCGTT CGGCGGTAAGAGTAACGGTCACAGTCTGGAAGGATTCGTTGATGCCGATT GAGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAG CTGAATGGTGGTGCAATACGCTGGTGCTCTAGGAAGCAACAGATAGTCAC GTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGACAAGTGGGAAAGG AGACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig29842:1..1341+

>mRNA_H-paniculata_contig29842.8105.1 ID=mRNA_H-paniculata_contig29842.8105.1|Name=mRNA_H-paniculata_contig29842.8105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig29842:1..1341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTTGCCTGGTCGTAGAACATGATTTCGA
ATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAG
AAGAGCTGTTTGTTAAGCTACCCCCCGAGTATGTCGACGTTACGTACTGT
TTTTTGCCTGGTCGTAGAACATGATTTCGAATTAGAAGGCATGGACGTAG
ATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTA
CCCCCCGAGTACGAGATCAAGCATAACATAAGTCAGCGTTTTAGGACGAA
AGATTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACC
GCCCTAATGGTACCATAACCATTTTGCAGGGTAGCTATATCTGCGAGGTA
CTAAAAAGATACGGTTTTTACGAGTGTCGAGGAGTACCCACCCCTGTAGA
GGGAAAAGTGCAGATCTTGGCACCAGAACGAGATCAAGCATAACATAAGT
CAGCGTTTTAGGACGAAAGATTTGGGCTCTCTCTCGCGCGTGTTGGGAAT
AGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATTTTGCAGGGTA
GCTATATCTGCGAGGTACTAAAAAGATACGGTTTTTACGAGTGTCGAGGA
GTACCCACCCCTGTAGAGGGAAAAGTGCAGATCTTGGCACCAGAAGGGAG
AAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGATTACTCATGTACG
CCTCGACAGGAACTAGACCTGATATAGCATACGCTGTACACCAAGCAGCA
CGTCGTATGGAGGACCCATGTCAAGAAGACTTCGGTACATGCAAGCACAA
TTTTCTTTATCTCAGTACTATGCCTGACCTCGGCATTTCGTTCGGCGGTA
AGAGTAACGGTCACAGTCTGGAAGGATTCGTTGATGCCGATTGAAGGGAG
AAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGATTACTCATGTACG
CCTCGACAGGAACTAGACCTGATATAGCATACGCTGTACACCAAGCAGCA
CGTCGTATGGAGGACCCATGTCAAGAAGACTTCGGTACATGCAAGCACAA
TTTTCTTTATCTCAGTACTATGCCTGACCTCGGCATTTCGTTCGGCGGTA
AGAGTAACGGTCACAGTCTGGAAGGATTCGTTGATGCCGATTGA
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