mRNA_H-paniculata_contig2981.8097.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2981.8097.1
Unique NamemRNA_H-paniculata_contig2981.8097.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2981.8097.1 vs. uniprot
Match: A0A6H5L382_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L382_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.770e-6
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    7 SCSSGTYAWGMFFLVLNLLCLAVPPTILCVRCWRRITQPPPL----SSLVAAGEGEGGDVK 177
            +CSSGT+AWG+ FLVL+LL L  PP   C RC+ R T+  P     S LV   E    D K
Sbjct:  289 TCSSGTFAWGVMFLVLDLLLLVAPPVWWCARCYDRATRSVPAVAATSVLVVPDERPATDAK 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2981.8097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L382_9PHAE2.770e-647.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2981contigH-paniculata_contig2981:11108..11300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size194
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.4285564-CDS-H-paniculata_contig2981:11107..112991622929910.4285564-CDS-H-paniculata_contig2981:11107..11299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2981 11108..11299 +
1691481065.6095836-CDS-H-paniculata_contig2981:11107..112991691481065.6095836-CDS-H-paniculata_contig2981:11107..11299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2981 11108..11299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2981.8097.1prot_H-paniculata_contig2981.8097.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2981 11108..11299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2981.8097.1

>prot_H-paniculata_contig2981.8097.1 ID=prot_H-paniculata_contig2981.8097.1|Name=mRNA_H-paniculata_contig2981.8097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
SLSCSSGTYAWGMFFLVLNLLCLAVPPTILCVRCWRRITQPPPLSSLVAA
GEGEGGDVKLEVAA
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mRNA from alignment at H-paniculata_contig2981:11108..11300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2981.8097.1 ID=mRNA_H-paniculata_contig2981.8097.1|Name=mRNA_H-paniculata_contig2981.8097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=193bp|location=Sequence derived from alignment at H-paniculata_contig2981:11108..11300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCTCAGTTGCAGCTCGGGCACGTACGCCTGGGGCATGTTTTTTCTCGT
CCTCAACCTACTGTGCCTTGCGGTACCGCCCACCATTCTGTGTGTACGGT
GTTGGCGTCGAATAACGCAACCACCGCCGTTGTCCTCCCTGGTAGCTGCT
GGTGAAGGCGAGGGAGGCGACGTGAAGTTGGAGGTTGCGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2981:11108..11300+

>mRNA_H-paniculata_contig2981.8097.1 ID=mRNA_H-paniculata_contig2981.8097.1|Name=mRNA_H-paniculata_contig2981.8097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig2981:11108..11300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCTCAGTTGCAGCTCGGGCACGTACGCCTGGGGCATGTTTTTTCTCGT
CCTCAACCTACTGTGCCTTGCGGTACCGCCCACCATTCTGTGTGTACGGT
GTTGGCGTCGAATAACGCAACCACCGCCGTTGTCCTCCCTGGTAGCTGCT
GGTGAAGGCGAGGGAGGCGACGTGAAGTTGGAGGTTGCGGCGAGTCTCAG
TTGCAGCTCGGGCACGTACGCCTGGGGCATGTTTTTTCTCGTCCTCAACC
TACTGTGCCTTGCGGTACCGCCCACCATTCTGTGTGTACGGTGTTGGCGT
CGAATAACGCAACCACCGCCGTTGTCCTCCCTGGTAGCTGCTGGTGAAGG
CGAGGGAGGCGACGTGAAGTTGGAGGTTGCGGCG
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