mRNA_H-paniculata_contig29696.8070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29696.8070.1
Unique NamemRNA_H-paniculata_contig29696.8070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 142 bits (358), Expect = 1.620e-38
Identity = 70/142 (49.30%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAK 429
            L G+VDADWA D  DR+S   Y   L GG ISW S+KQ      STEAEY+ A  A KE  +LR  L  IG  C+ +T L  DN+SA++++     H RTKHI +R+H ++E V  G + L+YV TGDQ AD+L KGL +AK
Sbjct:  177 LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAK 318          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 147 bits (372), Expect = 2.960e-38
Identity = 72/142 (50.70%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAK 429
            L G+VDADWA D  DR+S   Y   L GG +SW S+KQ      STEAEY+AA  A KE  +LR  LG IG  C+ +T L  DN+SA++++     H RTKHI +R+H ++E V  G + L+YV TGDQ AD+LTKGL +AK
Sbjct:  983 LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 138 bits (347), Expect = 6.510e-38
Identity = 69/142 (48.59%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAK 429
            L G+VDADWA D  DR S   Y   L GG ISW S+KQ +    STEAEY+AA  A KE  +L   L  IG  C+ +T L  DN+SA++++     H +TKHI +R+H ++E V  G + L+YV  GDQ AD+LTKGL +AK
Sbjct:   79 LTGYVDADWAGDVNDRHSISGYTFLLAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAK 220          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 132 bits (333), Expect = 1.720e-36
Identity = 66/152 (43.42%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 GLEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIG-FGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNLL 453
            GL+G+ DADWA D + R+ST  Y   +NGG ISW S+KQ+ V   STEAEY+A  EA +E V+L+  L  +G      +  ++EDN+ +I+L+     H RTKHI +R+H ++E V +G + L+YV T D  AD++TK +   +F +LR+ L
Sbjct:   24 GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQFHVLRSKL 175          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A1Y1L8J7_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L8J7_PHOPY)

HSP 1 Score: 130 bits (327), Expect = 1.600e-35
Identity = 68/150 (45.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNLL 453
            L  + D+D+A D + RKST  YV+   GG ISWCSRKQ +V+  STEAEY+AA +  KE ++L+ ++  +    + S TL  DN+SAI L      + R+KHI +R+H + E VREG+L +KY  T +Q ADI TK L + KF + + LL
Sbjct:   30 LTAYCDSDFAGDVETRKSTTGYVIYFCGGPISWCSRKQPIVSLSSTEAEYIAAADCVKELLFLKSLIEEL-INTKVSKTLNVDNQSAIQLMKSGQFNRRSKHIDVRFHFLCEKVREGVLEVKYCPTNNQIADIFTKALGKQKFNVFKELL 178          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: UPI000D3F8D86 (Ty1/Copia family ribonuclease HI n=1 Tax=Acinetobacter nosocomialis TaxID=106654 RepID=UPI000D3F8D86)

HSP 1 Score: 131 bits (329), Expect = 1.610e-35
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 GLEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIG-FGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNLL 453
            GL+G+ DADWA D + R+ST  Y   +NGG ISW S+KQ+ V   STEAEY+A  EA +E ++L+  L  IG    + +  ++EDN+ +I+L+     H RTKHI +R+H ++E V +G + L+Y  T D  AD++TK ++  +F  LR+ L
Sbjct:   28 GLQGYSDADWAGDIETRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADLMTKPITAVQFDFLRSKL 179          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901)

HSP 1 Score: 130 bits (327), Expect = 4.950e-35
Identity = 67/150 (44.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNLL 453
            +EG+VDAD+AED + R+ST  YV  L  G ++W +++Q++VT  +TEAEYVAA  A KE ++LR++L  +   C  +T +F DN+S + L   S  H RTKHI +R H I+E V  G +  K V T  Q AD+ TK L R +F+ L  L+
Sbjct:   59 IEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADLFTKALPRDRFKALCQLI 208          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A177WSV4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WSV4_BATDL)

HSP 1 Score: 128 bits (322), Expect = 1.640e-34
Identity = 69/151 (45.70%), Postives = 96/151 (63.58%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMG-SGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNLL 453
            L G+ DADWA D K RKST  Y+  +    +SW S KQ  V   + EAEY AA  A +E ++LR +LG +GF   G TTL+ D++SAIS  +G S  H  TKHIG++ + +++ + +G++  +Y+ T DQ ADILTKGL R  F+   NLL
Sbjct:   36 LSGYSDADWAGDVKTRKSTSGYLCYVGNALVSWRSSKQTCVAVSTMEAEYTAAESASRELLFLRDLLGELGFEQDGPTTLYCDSQSAISNMIGPSVVHEATKHIGIKINALRDRISQGLIKPEYIGTKDQVADILTKGLPRPAFEQFVNLL 186          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A6A4ZBJ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZBJ3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.670e-34
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 GLEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIG-FGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNLL 453
            GL+G+ DADWA D + R+ST  Y   +NGG ISW S+KQ+ V   STEAEY+A  EA +E ++L+  L  IG    + +  ++EDN+ +I+L+     H RTKHI +R+H ++E V +G + L+Y  T D  AD++TK ++  +F  LR+ L
Sbjct:  124 GLQGYSDADWAGDIETRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADLMTKPITAVQFDFLRSKL 275          
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 132 bits (333), Expect = 1.950e-34
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    4 LEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAEYVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCRTKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILR 444
            L GFVD+D+A D  DRKST  YV  L GG +SW S+KQ +VT  +TEAE+VAA     + ++LR ILG IG+     TTLF DN S I LS     H R+KHI +R++ +++ V E ++ LK+  T DQ +DI+TK +    F+ LR
Sbjct:  220 LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29696.8070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZSL8_9AGAM1.620e-3849.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZY34_9AGAM2.960e-3850.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Z0A7X3_9AGAM6.510e-3848.59Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
H3G5T8_PHYRM1.720e-3643.42Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A1Y1L8J7_PHOPY1.600e-3545.33Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
UPI000D3F8D861.610e-3542.76Ty1/Copia family ribonuclease HI n=1 Tax=Acinetoba... [more]
UPI00193C89014.950e-3544.67secreted RxLR effector protein 161-like n=1 Tax=So... [more]
A0A177WSV4_BATDL1.640e-3445.70Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A6A4ZBJ3_9STRA1.670e-3442.76Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6D2JBX5_9BRAS1.950e-3446.94Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29696contigH-paniculata_contig29696:2524..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score133.7
Seed ortholog evalue7.5e-29
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.2317913-CDS-H-paniculata_contig29696:2523..29821622929906.2317913-CDS-H-paniculata_contig29696:2523..2982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29696 2524..2982 -
1691481063.7713392-CDS-H-paniculata_contig29696:2523..29821691481063.7713392-CDS-H-paniculata_contig29696:2523..2982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29696 2524..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29696.8070.1prot_H-paniculata_contig29696.8070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29696 2524..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29696.8070.1

>prot_H-paniculata_contig29696.8070.1 ID=prot_H-paniculata_contig29696.8070.1|Name=mRNA_H-paniculata_contig29696.8070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
GLEGFVDADWAEDAKDRKSTIEYVLKLNGGTISWCSRKQQLVTWCSTEAE
YVAAGEAGKETVYLRKILGSIGFGCRGSTTLFEDNESAISLSMGSGAHCR
TKHIGLRWHGIQEWVREGILALKYVQTGDQFADILTKGLSRAKFQILRNL
LT*
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mRNA from alignment at H-paniculata_contig29696:2524..2982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29696.8070.1 ID=mRNA_H-paniculata_contig29696.8070.1|Name=mRNA_H-paniculata_contig29696.8070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=459bp|location=Sequence derived from alignment at H-paniculata_contig29696:2524..2982- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGCCAAGGACCG AAAGTCCACAATAGAATACGTTCTCAAACTAAACGGTGGTACGATAAGTT GGTGCTCTAGGAAGCAGCAGTTAGTCACGTGGTGCAGCACAGAGGCAGAG TACGTTGCTGCAGGAGAAGCGGGGAAGGAGACGGTATATCTTAGGAAAAT ACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTATTTGAGG ACAACGAGTCGGCTATTAGTCTCAGTATGGGATCTGGTGCACATTGCAGG ACAAAACACATTGGATTGCGCTGGCACGGAATTCAAGAGTGGGTTCGGGA AGGAATATTGGCATTGAAATACGTGCAGACCGGCGACCAATTTGCTGACA TTTTAACGAAAGGACTGAGCAGAGCCAAGTTTCAGATACTGAGAAATTTA CTCACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig29696:2524..2982-

>mRNA_H-paniculata_contig29696.8070.1 ID=mRNA_H-paniculata_contig29696.8070.1|Name=mRNA_H-paniculata_contig29696.8070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig29696:2524..2982- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGCCAAGGACCG
AAAGTCCACAATAGAATACGTTCTCAAACTAAACGGTGGTACGATAAGTT
GGTGCTCTAGGAAGCAGCAGTTAGTCACGTGGTGCAGCACAGAGGCAGAG
TACGTTGCTGCAGGAGAAGCGGGGAAGGAGACGGTATATCTTAGGAAAAT
ACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTATTTGAGG
ACAACGAGTCGGCTATTAGTCTCAGTATGGGATCTGGTGCACATTGCAGG
ACAAAACACATTGGATTGCGCTGGCACGGAATTCAAGAGTGGGTTCGGGA
AGGAATATTGGCATTGAAATACGTGCAGACCGGCGACCAATTTGCTGACA
TTTTAACGAAAGGACTGAGCAGAGCCAAGTTTCAGATACTGAGAAATTTA
CTCACATGAGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGC
CAAGGACCGAAAGTCCACAATAGAATACGTTCTCAAACTAAACGGTGGTA
CGATAAGTTGGTGCTCTAGGAAGCAGCAGTTAGTCACGTGGTGCAGCACA
GAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGGAAGGAGACGGTATATCT
TAGGAAAATACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACAT
TATTTGAGGACAACGAGTCGGCTATTAGTCTCAGTATGGGATCTGGTGCA
CATTGCAGGACAAAACACATTGGATTGCGCTGGCACGGAATTCAAGAGTG
GGTTCGGGAAGGAATATTGGCATTGAAATACGTGCAGACCGGCGACCAAT
TTGCTGACATTTTAACGAAAGGACTGAGCAGAGCCAAGTTTCAGATACTG
AGAAATTTACTCACATGA
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