prot_H-paniculata_contig2968.8065.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2968.8065.1
Unique Nameprot_H-paniculata_contig2968.8065.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length346
Homology
BLAST of mRNA_H-paniculata_contig2968.8065.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 4.620e-147
Identity = 223/344 (64.83%), Postives = 274/344 (79.65%), Query Frame = 0
Query:    1 MRGPSKSTSGVIAVTISTGTLSASYWLLRRFRRRFNQSRAIRNGIRSRANAACLEVGDYVCLRGTVTAGARQLESPNKRVPCVAYRVVTVRVVDSRSSKKKASVSGTGGLLSGLSSVIPWLLSFSSVAQVDTEKWDTVYQLVSTRQETVEVYLEEDNDLADLEAMASAGTGKRRPRVRVDLGGAEFFSMEQISAEFQAETGSTAGESRTQLGYRTTEEVLAIGSKVMVLGEVGHDTEGAVGDVVLRKASPSSIFDLKTSSISRPFIVSTNTEQGLLQEVERSARIYFWTALPSAAAGLAIACWGIMGILAAIDEGSPSGSADPPSFGEGRTTAPRLRGLLGWRR 344
            MRGPS  +  V+AVT STG+LS  Y+L+RRFRRR NQS+A+R G  SR +AA L VGDYV +RGTV+AGAR L+SP KRV CV+YRV  VRVVDSR++KKKASV G  G+L G++SV+PWL SF++ AQVDTEKWDTVYQ +S+R ETV+++L++ + +ADLEA+A AGTGKRRPRVRVDL GAEFFSMEQ+++EF+AE  +    SRTQLGYRTTEEVLA+GS+++VLGEVG D EGA GDVVLRKA+PSSI DLKT+SISRPF+ S  +EQGLLQE+ERS RIYFW ALPS A GLA A  G++ +LA I++ S      P   G G +  P  +GLLGWRR
Sbjct:    1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDSIADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLATIEDRSVE---RPALTGSGHSAPPASKGLLGWRR 341          
BLAST of mRNA_H-paniculata_contig2968.8065.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.280e-40
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = 0
Query:  218 EVLAIGSKVMVLGEVGHDTEGAVGDVVLRKASPSSIFDLKTSSISRPFIVSTNTEQGLLQEVERSARIYFWTALPSAAAGLAIACWGIMGILAAIDEGSPSGSADPPSFGE-GRTTAPRLRGLLGWRR 344
            +VLA+GS+++VLGEVG D EGA GDVVLRKA+PSSI DLKT+SISRPF+ S  +EQGLLQE+ERS RIYFW ALPS A GLA A  G++ +LAAI++ S    A+ P+  E G +  P  +GL GWRR
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLAAIEDRS----AERPALTESGHSAPPASKGLQGWRR 125          
BLAST of mRNA_H-paniculata_contig2968.8065.1 vs. uniprot
Match: A0A6V1PF55_HETAK (RING-type E3 ubiquitin transferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF55_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 4.300e-14
Identity = 77/275 (28.00%), Postives = 134/275 (48.73%), Query Frame = 0
Query:   31 FRRRFNQSRAIRNGIRSRANAACLEVGDYVCLRGTVTAGARQ--LESPNKRVPCVAYRVVTVRVVDSRSSKKKASV-----SGTGGLLSGLSSVI------PWLLSFSSVAQVDTEKWDTVYQLVSTRQETVEVYLEEDNDLADLEAMASAGTGKRRPRVRVDLGGAEFF--SMEQISAEFQAETGSTA-GESRTQLGYRTTEEVLAIGSKVMVLGEVGHDTEGAVGDVVLRKASPSSIFDLKTSSISRPFIVSTNTEQGLLQEVERSARIYFWT 289
            FRR   +S+ +R  I  + N A ++ G YV L+G +     +  L SP  + PCV Y++  +RVV+  S+ KK+       +GT  +    ++ +        + ++S  A V+   W   ++++    E   + L++              TG     + ++  GA++F  +    S  F AE      G++R  LG +  EEVL +G KV+V GEV  +++     +V+R+A+  S+FD +T  I++PFIV+      LL +VE+S     WT
Sbjct:   33 FRRANEKSKLLR--ITKKVNVAGVQEGQYVMLQGCLVPKDEEGSLISPESQQPCVMYKMTKIRVVEELSAVKKSKTGQKKGTGTKNVAGDRTTCVGEERKEEKVENYSDQA-VEQNDWKVKHEVMENNTEKTAMCLKDK-------------TGS----IAIETAGAQYFYGTGWGTSERFIAEKEELKRGQTRRALGIKILEEVLPVGQKVLVFGEV-QNSDDDDAPLVVRRAAARSMFDRRTG-IAKPFIVTCFGRTELLAQVEQSGVALAWT 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2968.8065.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLV1_ECTSI4.620e-14764.83RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5LN52_9PHAE1.280e-4061.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1PF55_HETAK4.300e-1428.00RING-type E3 ubiquitin transferase n=1 Tax=Heteros... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022170E3 Ubiquitin ligase, GIDE-typePFAMPF12483GIDEcoord: 132..298
e-value: 3.8E-13
score: 49.1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 285..312
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 313..345
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..284
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 10..28
NoneNo IPR availableTMHMMTMhelixcoord: 290..312

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2968contigH-paniculata_contig2968:4917..11510 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2968.8065.1mRNA_H-paniculata_contig2968.8065.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2968 4874..11528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2968.8065.1 ID=prot_H-paniculata_contig2968.8065.1|Name=mRNA_H-paniculata_contig2968.8065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp
MRGPSKSTSGVIAVTISTGTLSASYWLLRRFRRRFNQSRAIRNGIRSRAN
AACLEVGDYVCLRGTVTAGARQLESPNKRVPCVAYRVVTVRVVDSRSSKK
KASVSGTGGLLSGLSSVIPWLLSFSSVAQVDTEKWDTVYQLVSTRQETVE
VYLEEDNDLADLEAMASAGTGKRRPRVRVDLGGAEFFSMEQISAEFQAET
GSTAGESRTQLGYRTTEEVLAIGSKVMVLGEVGHDTEGAVGDVVLRKASP
SSIFDLKTSSISRPFIVSTNTEQGLLQEVERSARIYFWTALPSAAAGLAI
ACWGIMGILAAIDEGSPSGSADPPSFGEGRTTAPRLRGLLGWRRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022170GIDE