mRNA_H-paniculata_contig2967.8062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2967.8062.1
Unique NamemRNA_H-paniculata_contig2967.8062.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2967.8062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2967contigH-paniculata_contig2967:5141..9466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size429
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2967.8062.1prot_H-paniculata_contig2967.8062.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2967 8101..9466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.1160178-UTR-H-paniculata_contig2967:5140..52091622929905.1160178-UTR-H-paniculata_contig2967:5140..5209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2967 5141..5209 +
1691481063.2778103-UTR-H-paniculata_contig2967:5140..52091691481063.2778103-UTR-H-paniculata_contig2967:5140..5209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2967 5141..5209 +
1622929905.1442587-UTR-H-paniculata_contig2967:8065..81001622929905.1442587-UTR-H-paniculata_contig2967:8065..8100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2967 8066..8100 +
1691481063.286947-UTR-H-paniculata_contig2967:8065..81001691481063.286947-UTR-H-paniculata_contig2967:8065..8100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2967 8066..8100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.160229-CDS-H-paniculata_contig2967:8100..81991622929905.160229-CDS-H-paniculata_contig2967:8100..8199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2967 8101..8199 +
1691481063.2975237-CDS-H-paniculata_contig2967:8100..81991691481063.2975237-CDS-H-paniculata_contig2967:8100..8199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2967 8101..8199 +
1622929905.1802335-CDS-H-paniculata_contig2967:9241..94661622929905.1802335-CDS-H-paniculata_contig2967:9241..9466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2967 9242..9466 +
1691481063.3083615-CDS-H-paniculata_contig2967:9241..94661691481063.3083615-CDS-H-paniculata_contig2967:9241..9466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2967 9242..9466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2967.8062.1

>prot_H-paniculata_contig2967.8062.1 ID=prot_H-paniculata_contig2967.8062.1|Name=mRNA_H-paniculata_contig2967.8062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MAASRLWQAAGACLTMCPVAMCVRDGVGTPTFQQLRHSSTDSGAYPAWVV
CLNNNNVPSARQKKKQRPPTMMFTSRGSAARLGTSSSSAAVRYSSSRTGS
DGGGGREG
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mRNA from alignment at H-paniculata_contig2967:5141..9466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2967.8062.1 ID=mRNA_H-paniculata_contig2967.8062.1|Name=mRNA_H-paniculata_contig2967.8062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4326bp|location=Sequence derived from alignment at H-paniculata_contig2967:5141..9466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACAGCGGTGCAGGTGCCGTGGACGAAACCTAGGAGCGCATTTTCTG
CATATCTTCACCTGACACGGTGAGTCACTGTCATCAAAGTAAACTCTGGC
TGATTTTTGCCATGCATCGCAAACTACCAGGGCTTGCTATCTATAGTATA
CATGTCATGTCTGACATGACATGACACAACTGTAGGTTGTCATGTAAAAT
TCAAGCCGCATTGCCTCCACTGCTATACAGAGACAGAGAACAGCTGGGTG
CAGCACTTGGAGTATGAATCTTGCATGTCGCTACCGACCTGCCGTCGCCT
CCGTTGTGCTGGCTACATTGACTGCCATGCTGGTGCCTCTAATTTTTTTC
TGTGGCGGCTGTGCATACAAAGGCGGACTGGTATAGCTTTGCGAGAAACA
TATTGTTGTTATCTAGGAATCTCCTCTGTGCGCTGTGGTGTCCTGACTTT
GGCTTAGGGGCTACAAACTCTACGTTGCTCACAATTGCCTCTACTGTCAT
GTTGTCGTGGAAAACTGCGTTGAACGGCTAGTTGGCTTCTGCCAATAACC
GTGTTGCCGGTGGAGGGGCTAGGGTCGTGCAATTTGACCAAATCGCAGGT
AGACGGTACATGCGGCAGACCCGTGCCAGTTTTAGAGCTGTATCTATCTG
TATATTTTATGTCGAGCTCCGGTATGTATCAGGAGCACCTATATGTGACA
GAGACGGGAGCGGCGGCCCTACGGCCCATGTCGCAAACTCGGCGCGTCTC
ATGATCATGCGTATAAAATACCTTAACGTGCCATCTGAAGCTATAGTTGT
ACGCCCACTCCATGAAGATTTACTGTAGCAATATGATGACATTCTTGTAA
GCGGTCTATCCTACTCCACTAATGTCTCGCACAGGATTGAAGGCATATTC
GTGAAGCCTACCAATAGACCTACTTCCAATATTTTTCGTTCGAAATATTA
TTTTACAAAGATGCAACTTACACTTGCTTACCCGGCACTCAGCAAGAATG
CAACGAGTCAGGAAAAAAAACAAAAAAAAACATCAGCTCACCGCCCGCGA
AGAGCCGTTTTCTCTCGCCAAATAGACGCCTCTTACAAATTGTTATTTAC
TCGGTTGGTTGACCCTTTGACCATACGACAAGATACGTGGGAGTCGTGAC
TGTAAGACCAATACCTCATGAACATGAGATGAGAAACAACACTCTTGTTG
GTTTTGGATACAAATGGATCGCTTGCCACAAGACTTTCTCCTTTGAGGAA
CGACACACGCCTCCTGAAGGCCAAAAACTGTCAACCTGTTGGCTTGTTGA
CGTAGGAAACACATTCGGGCAAGGACAACGATAATATGATCGAGAAATAA
GGCTGTTTGCAGAAACGCAGATATCGATCAGTAATATTTCACTTTTTGCT
CTTTCACCTGTTGTCAGTCACCGGTTGTTGATTCATCTGAATCTCGTCCA
CGTATCTGTGGGCTGTGAACGAGCCTCACGATTTCAAGAACTCCATCTAT
GATGGCCACATAATAAAGAAACGATTTCAATTCTTGAGAACGTGCTTAAA
ATCCCAAAATTTGGAATCTATGTCTAATTTTCGCAATCACCCTGAAGAAA
AAAAAATGGGTGGGCGGGGAGGAGGAATATAATTGTTTGACTCCCCGGAC
AAACACGAAAACTTGCAAATGGTTTTCACATACGCATGAATTTTTGCCCT
GTAAGTACTTGCCTAGAAAGGGTGTCTTGCACGAATTTTTGAACATACGC
ATGACGCCCCCGCGAAAGTAAAGGGGTCACGGCCGCGAGAGGCATGTTTT
TGACGCATCTCCCTTCTCGCGGTAGGTTCGCCGCGGGATTGTCAAGTTCC
AAATTTTTCTGTTTCAGGGTCCGGTGCCATAGGGGTGAATTATTAGTGTT
TTATCGTGCCTCGGATTTTGAAAAAAAAATGACATATATATTTTTTTTCC
GGGTATTCGCCTGGAGGTTCAGTATGAGCACGTCTATTGAATTTGTTTTG
AACCGTCAATAACTGCTCCTAGTTGTAGGTAGTGAAGGCGAATAAACTGG
GGTCAAGACTTCAACCCCCGGACGAATACAAATACAGGACACGAATAAAT
ACGAGAAATCTGGAACGAATACTGTATCTGTTTGAGTTGGGGAAGATGTC
CATGTGACGCGAATATTATGCGGTTTACTCGATATACCATGGAGTATCGA
AAACCTCAGCCAGATAGAGGATTCAATAAATACAGTACCATCCGGAAAAT
AAGCAGGACCTGCATGTGTGACGATTGTTCGCCGGGTATACGACTACCTG
GGGACCATCTGTAGAGTGAGCATCCATAGACTTGTAAACGAATAAATGAT
AGTTGGAGATAGTTGCGAATGCTCCATCCGTATTTGTCCAGGGGTTGCAA
GACTTTCCACCACTGTATGTACCCGCATGTTCTGAAGATTTTGGCGAATA
TATACATGTATGCATATATATATATATTTGTCGTGGATGTTGCCAAGTAA
TCGTCTGAAGGGTGATCTATTGGAGGATGACCTTTTGAGGGTTACCAACG
CCGTATCCCCCACGTAATCGCTTTCTAGTTCCCACATCAAAAATAAGGGA
ATACGAAGTCTATGGCATGATCACGGGGGTAGGGAGAGAACTTGTCCCGT
TTCAGATAGACAAATTTTTATGCGCAGACAATGGTTGTGATTTTTCAGCT
CTTTTCTATTTATATTTTACCGAGTGAACGATTGCTCAGATCCAGAACAC
TCGGAAAATACCCATAATGGCAATCTTACATTGAACAGAAAATACGCCGT
ATCTCATTTTTTTTTTTATAGTATCATATCACGCTTTTCGTCCCCGTATA
TCTCTGCTCTGTCCCGTATGTCCGTCCGTGGTTGCCACCCGTTGTCACCT
CTCCCCCTCCTCGCGTAACCGAAAGCAAAGAAGGTGGGCATACCTAGATA
AGGCAACGGCATGGCCGCATCACGCCTCTGGCAGGCCGCTGGGGCGTGCT
TGACCATGTGTCCAGTGGCCATGTGCGTAAGAGACGGGGTGGGCACCCCG
ACTTTTCAGGTGAAGTCCACCCGGTAGTCACATATTTTCAAGCCGTTATG
TAAGATGTGACGGCTTTTGGGGCGTCTGTGGGTTGTTTCGGAACCGCAAA
AGGATCCGACAACGGTTAAGCAAATGAACGGATATATTTTGTGCGCAGTT
GTGTGTTGGACCTTACCACCTCAACTCCTTGTCTTTGCGGTATGTACTTA
CTGGCTATACTGGATAGCGTCCTCCAACGATCGGGGAAGAGGAGGGAGGT
ACAAATGGGCGTTCTTGTACCGTTGTTCCTGGAACATGACCTTTATTATC
AGCCCCTACATTGATTCCGATGGTTTTTCTAGGTATCTTTTTCTAGGAAG
GATCGAGAAAAGCAATCGTTGTCCTGGGGGGGGGGGGTGTAATGGTATCT
TCCCTACTTGCCGCTGTTTTCAAGGTGCAACAGAATACTCCTTCCCCCCG
TCTATGGTTGAATGATACGACTGGCTGTTTTCACTTATTCGTTTCTGTAT
ACAACCCCCCCCCCCTCCCCTCCCTCATTTTTAACACTTTCAGCCCCGCT
TGGTCATAATCTATATGGGAACTATACTGCACGTGGCTTTATGGTATATA
TGAATACACAAAGTCCTTGACTATTGATAAGGACCGCGAATGGATGATGA
CTAACTAGCGTCGAAAGGATTAAGCCTACGTATTGAGTATTAGGTATATG
TATTGCCTGAAGGTAACCGATGGTCGTTGTTGATTCGGAAGTATAGTTCC
GATTCTGCTATCAACAAAGTTCTAATGCGAATCACAATGGCCTACATGTA
AGCGTAGCAAGAGTCGGTGTGATAGATTGATTATTGTTTTTTATTCATTT
TTTTCTCTACTTACTGGGATAGGTTCGAGAACAAAACACTGGAATATGAA
TAAATACACAAGGCGTAGCCGTGTCTGTGCTACGCATAATAGTGGTCATA
ACATACGCCTGAACGCACGCAAGTGAAATACCTCACGCCCTCAACCCCCC
GTTTTCTACATACATCCACGGCATCATCATTGCCACCACCATCAACAACA
GCAACTCCGCCACTCCAGCACCGACAGCGGCGCGTATCCCGCATGGGTCG
TATGCCTTAACAACAACAACGTCCCCTCCGCCAGGCAGAAGAAGAAACAG
CGCCCACCGACTATGATGTTTACCTCGAGGGGATCCGCCGCGCGTCTAGG
CACTAGCAGTAGCAGTGCAGCCGTTCGATATAGCAGCAGTAGGACAGGGA
GTGATGGGGGCGGTGGAAGGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2967:5141..9466+

>mRNA_H-paniculata_contig2967.8062.1 ID=mRNA_H-paniculata_contig2967.8062.1|Name=mRNA_H-paniculata_contig2967.8062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig2967:5141..9466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCATCACGCCTCTGGCAGGCCGCTGGGGCGTGCTTGACCATGTG
TCCAGTGGCCATGTGCGTAAGAGACGGGGTGGGCACCCCGACTTTTCAGA
TGGCCGCATCACGCCTCTGGCAGGCCGCTGGGGCGTGCTTGACCATGTGT
CCAGTGGCCATGTGCGTAAGAGACGGGGTGGGCACCCCGACTTTTCAGCA
ACTCCGCCACTCCAGCACCGACAGCGGCGCGTATCCCGCATGGGTCGTAT
GCCTTAACAACAACAACGTCCCCTCCGCCAGGCAGAAGAAGAAACAGCGC
CCACCGACTATGATGTTTACCTCGAGGGGATCCGCCGCGCGTCTAGGCAC
TAGCAGTAGCAGTGCAGCCGTTCGATATAGCAGCAGTAGGACAGGGAGTG
ATGGGGGCGGTGGAAGGGAGGGGCAACTCCGCCACTCCAGCACCGACAGC
GGCGCGTATCCCGCATGGGTCGTATGCCTTAACAACAACAACGTCCCCTC
CGCCAGGCAGAAGAAGAAACAGCGCCCACCGACTATGATGTTTACCTCGA
GGGGATCCGCCGCGCGTCTAGGCACTAGCAGTAGCAGTGCAGCCGTTCGA
TATAGCAGCAGTAGGACAGGGAGTGATGGGGGCGGTGGAAGGGAGGGG
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