mRNA_H-paniculata_contig11258.806.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11258.806.1
Unique NamemRNA_H-paniculata_contig11258.806.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11258.806.1 vs. uniprot
Match: A0A067C561_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C561_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 2.920e-7
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 2 
Query:    2 DRKDNPGCRYSSSVSKTCSSEKGNRTCETIRRILRSCPGSRSEKIYEDIVREDRRSASANDAAIDGP 202
            DR ++P C Y++S+S  C S  G+RTCETIR+I R CPG   E I     +E+   A  NDA  D P
Sbjct:   10 DRAEHPECTYATSLSTACRSVNGDRTCETIRKIFRCCPGKPKELIINSSTKEE--GAEDNDAVADDP 74
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BLAST of mRNA_H-paniculata_contig11258.806.1 vs. uniprot
Match: A0A7S3XUZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUZ6_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 3.410e-7
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2 
Query:    2 DRKDNPGCRYSSSVSKTCSSEKGNRTCETIRRILRSCPGSRSEKIYEDIVREDRRSASANDAAIDGPPVMRGRLYPPDM 238
            D+  NPGC YS+S S++C +  G+ TCETIRRILRSCP     +IY +    +     +N    + PP    +  PP M
Sbjct:   13 DQLQNPGCGYSTSYSQSCRNINGDLTCETIRRILRSCPNKAPVEIYSNTTATNEDRPFSNGGLANLPPFAPSQQQPPFM 91
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BLAST of mRNA_H-paniculata_contig11258.806.1 vs. uniprot
Match: A0A6S9K4W9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K4W9_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 7.230e-7
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2 
Query:    2 DRKDNPGCRYSSSVSKTCSSEKGNRTCETIRRILRSCPGSRSEKIYEDIVREDRRSASANDAAIDGPPVMRGRLYPPDM 238
            D+  NPGC YS+S S++C +  G+ TCETIRRILRSCP     +IY +    +     +N    + PP    +  PP M
Sbjct:   13 DQLQNPGCGYSTSYSQSCRNINGDLTCETIRRILRSCPNKAPVEIYSNTTATNEDRPFSNGGLANLPPFAPSQQQPPFM 91
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BLAST of mRNA_H-paniculata_contig11258.806.1 vs. uniprot
Match: A0A1V9Z7I5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7I5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.370e-5
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 2 
Query:    2 DRKDNPGCRYSSSVSKTCSSEKGNRTCETIRRILRSCPGSRSEKIYEDIVREDRRS--ASANDAAIDGP--PVMRGRLYPPDMFSRLPRG 259
            D+  +P C Y++S+S  C S  G+RTCETIR+I R CPG   E I     +E+  +  ++A+DA ++ P     R R  P  M    P G
Sbjct:   10 DKAAHPECSYATSLSTACRSVNGDRTCETIRKIFRVCPGKPKELIINSSSKEEGGALDSNADDAQLEDPFQAFSRHRRGPDAMPPGFPMG 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11258.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A067C561_SAPPC2.920e-746.27Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S3XUZ6_HETAK3.410e-740.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6S9K4W9_HETAK7.230e-740.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9Z7I5_9STRA7.370e-537.78Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11258contigH-paniculata_contig11258:5480..8238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001780.1
Exons3
Model size667
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11258.806.1prot_H-paniculata_contig11258.806.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11258 5688..8223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.4415243-UTR-H-paniculata_contig11258:5479..56871622928829.4415243-UTR-H-paniculata_contig11258:5479..5687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11258 5480..5687 +
1691480637.0884206-UTR-H-paniculata_contig11258:5479..56871691480637.0884206-UTR-H-paniculata_contig11258:5479..5687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11258 5480..5687 +
1622928829.5268288-UTR-H-paniculata_contig11258:8223..82381622928829.5268288-UTR-H-paniculata_contig11258:8223..8238Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11258 8224..8238 +
1691480637.1245272-UTR-H-paniculata_contig11258:8223..82381691480637.1245272-UTR-H-paniculata_contig11258:8223..8238Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11258 8224..8238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.46264-CDS-H-paniculata_contig11258:5687..57171622928829.46264-CDS-H-paniculata_contig11258:5687..5717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11258 5688..5717 +
1691480637.098232-CDS-H-paniculata_contig11258:5687..57171691480637.098232-CDS-H-paniculata_contig11258:5687..5717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11258 5688..5717 +
1622928829.4909527-CDS-H-paniculata_contig11258:6709..69021622928829.4909527-CDS-H-paniculata_contig11258:6709..6902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11258 6710..6902 +
1691480637.106225-CDS-H-paniculata_contig11258:6709..69021691480637.106225-CDS-H-paniculata_contig11258:6709..6902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11258 6710..6902 +
1622928829.5111542-CDS-H-paniculata_contig11258:8002..82231622928829.5111542-CDS-H-paniculata_contig11258:8002..8223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11258 8003..8223 +
1691480637.1147316-CDS-H-paniculata_contig11258:8002..82231691480637.1147316-CDS-H-paniculata_contig11258:8002..8223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11258 8003..8223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11258.806.1

>prot_H-paniculata_contig11258.806.1 ID=prot_H-paniculata_contig11258.806.1|Name=mRNA_H-paniculata_contig11258.806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MRGRLYPPDMFSRLPRGSSNPESSSNSSSNSSGSGSGGVGGWAIPFPHPT
QQEGAHTYDDIAAEFFSEVFKPFKGIFDDNSTQFPPVPAPPPERDIIRPR
VSHPQWRARVGNTTPYCPPPHKGQEEHEDDRTQGSNKWQGGSVVEQA*
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mRNA from alignment at H-paniculata_contig11258:5480..8238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11258.806.1 ID=mRNA_H-paniculata_contig11258.806.1|Name=mRNA_H-paniculata_contig11258.806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2759bp|location=Sequence derived from alignment at H-paniculata_contig11258:5480..8238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCGCAAGGATAATCCAGGCTGCCGTTACAGTTCTTCCGTCTCTAAGA
CGTGCTCCAGTGAAAAGGGAAATCGAACATGTGAGACAATCCGGAGGATC
TTGAGGTCTTGCCCCGGTTCACGGTCGGAGAAGATATACGAAGATATCGT
GCGGGAAGACAGGAGATCTGCGTCTGCGAATGACGCTGCAATCGACGGGC
CGCCTGTAATGCGCGGTAGGCTGTACCCGCCAGATATGGTGAGATATCCA
AAGGGTTTGAGAGGCTTTGGAGGGTCCCCGGTACGATGCAATCAATCAAT
TATAGTAACCAATCGTGGTTCTCCAAACTTGAACAGCAATATCATCTAGC
ATGGTGAGATGTCGCCGTCAAGGCATTATCCACTTTTAAATTACATATTT
TGATTAGAGTGTTCTGACTCTGAGGTATTAATAGTATAGCTGACAGAATA
CGCTACACATATCGAGTCGGCCGAGCGGTGACAGTCAGCAAGACACGTAT
CCAATGTATAGTAGAGTTGATTGACTATTGTGCACGGCGATGATGGTAGA
CTCAAAAGACAGATAGTGGCAGCCCGCTTGTCAGTATATTGCAGCACCAT
GGCACTACGTTTTGTCTGCACGCGCCGTGTAATCGCAATTATCGCAAAAT
GTTGGGAAAATAGGGAGAGACGTTGGCAGGTACCAGCATCACCCAAGAGA
TCGTCAGTTGTTGCCGCTGTACGTGGTCGTATGCTTTTGTGTGTAATGGT
GTACCCAGATACAGCAGGCAGGAGCTTGCCCTGAGTTGTGTCAGGTGGGA
ACATAAGTGGCAACGTACGTACACACACCCTCTGTCTCGCGCTCACGTAC
TTAGGTGTTGGGTTTCTTGTAAACAAATTGTTCGGAGCTTCAATTTTCGC
GTGTCCCAAGTGTGTCCAACTGCGGGCCCTTCTCGGCGCTCTAAGGACTG
AACTTGTACGTCCATTCAGAGTCTGTGTTATCCTTGCACTCAACTCGTTG
CGTTAACAATGGGAGCTGTTTTTTTTGTTCTGTAGCGAAAGAGTTCTTTT
TATATCAGAAAGCCCCCTTTGCATCGCAAACAATACGCCCAAGGTAGATA
ATGACAATACGTGGAGGTTGCCTTGCAGTCATGATTAATATTTGATACAT
ATTTGATATGTGCTGGTCATCCACTATGCCGTCAGTGCCTCGAATCACAT
GTGAGAATTTTGTCCCCATGGTGCCCGCAGTTTTCCAGACTACCGCGCGG
AAGCAGCAACCCGGAAAGCAGCAGCAACAGCAGCAGCAACAGCAGCGGTA
GCGGTAGCGGCGGCGTCGGCGGGTGGGCTATCCCATTTCCACATCCAACA
CAGCAGGAAGGAGCGCATACATACGACGACATCGCTGCCGAATTTTTCTC
CGAGGTTTTCAAGCCATTCAAGGGTGCGAAAGAGATTTTACTGTACTAAT
GTTACTGAACTATACTCTATAGTGTTTTGAAGTGCCGTCTGTGTGTGTCT
GTTGCAAGGATGAAAGATGAAAACAAAAAAATTGGCGCGAAGTCTGTTTT
TGTAGTTGTGGCATACGACGATCACCTTCCTCTGCCAGGAGGCAATTCGG
GAAGCACTTTTCTTGGGTTTTGAATGTTTCTGTGCAGTTTGGGAATTCAA
TGGGACTTAAGCATGTCATTCAGAAAGTAGTGACTTCCTCCATCGGTTGT
CCTGAGACCTATTTGTCGCGCTGACACAAACAACGATGGTTTTGGTTGTG
CGTCGAGAGCGTATTTTTTCAGGTCCCCCGCCTTGGTGAGCCTCCCTTCG
GTTGTTACTTCAAATCTGGTACCTGGTAGTTTTTGTTTGTTTGTTTTTTT
GTCTTCCATTACCAAGGTAAAAATTGTACACTCGTTCCTGTCCTGATCGT
TCTGTATGCAAAATCTCCACAGAGACGTGACAACTCTATCGTCGCGGGAG
GCTATTTCGGAACTAAAAAGTCAAATTTGTCGATTAATAGCGAGCGCTGC
AGTCGTTGTCCGCTGGGCCATATCTAAACTCCCTGTCTGTACTATATGCG
TTGGACGGGCGGTGTCCAACAGTGGCGGCTCTGTTCACGCGTAATGATGA
AGACAGGCTTTGCTATGTCCTGTCTTCGTTAGGTGGGGAGAGGTAGGGAT
GCTTGTGGATACTAATGCCCAAGCCGTTAACCCAAAACTCGCTGTATTCG
GTGAAGTTATTGCAGTTTGTCTTCGCACGTGTGCTTAATGGAGTAATACC
AAAATAATTTTGCTTGGATAACTCGAGTTGGAAAGCTATCGTCCGTGCGC
TTTTTTTGCATTTTGTTGAAATATTATAGGAACGCCTTGGACGCAAACTC
AAACCCGCTGCGTTTGACAAATCTTGCTACAGTAATTTCACGTTTGGCTT
ACGTTGAAGTACCTGAAATGAATTTTCCAAGAAACCGTCGAACCCCGCTG
CATGGTAGATATATATAATATGTGTATAATATCATGTCTCCTACGCCTTT
TCTTCTTCTGTTGAAAATAACAGGAATCTTTGACGACAACTCGACACAGT
TCCCACCCGTACCAGCACCACCGCCGGAACGTGATATCATCCGCCCGCGC
GTCTCACACCCGCAGTGGAGGGCGAGGGTCGGGAATACGACGCCCTACTG
CCCACCACCCCACAAGGGACAGGAAGAGCACGAGGACGATAGAACGCAGG
GCTCAAACAAATGGCAGGGGGGTTCTGTTGTGGAGCAGGCGTGAATGTGC
AACGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11258:5480..8238+

>mRNA_H-paniculata_contig11258.806.1 ID=mRNA_H-paniculata_contig11258.806.1|Name=mRNA_H-paniculata_contig11258.806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig11258:5480..8238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGGTAGGCTGTACCCGCCAGATATGATGCGCGGTAGGCTGTACCC
GCCAGATATGTTTTCCAGACTACCGCGCGGAAGCAGCAACCCGGAAAGCA
GCAGCAACAGCAGCAGCAACAGCAGCGGTAGCGGTAGCGGCGGCGTCGGC
GGGTGGGCTATCCCATTTCCACATCCAACACAGCAGGAAGGAGCGCATAC
ATACGACGACATCGCTGCCGAATTTTTCTCCGAGGTTTTCAAGCCATTCA
AGGTTTTCCAGACTACCGCGCGGAAGCAGCAACCCGGAAAGCAGCAGCAA
CAGCAGCAGCAACAGCAGCGGTAGCGGTAGCGGCGGCGTCGGCGGGTGGG
CTATCCCATTTCCACATCCAACACAGCAGGAAGGAGCGCATACATACGAC
GACATCGCTGCCGAATTTTTCTCCGAGGTTTTCAAGCCATTCAAGGGAAT
CTTTGACGACAACTCGACACAGTTCCCACCCGTACCAGCACCACCGCCGG
AACGTGATATCATCCGCCCGCGCGTCTCACACCCGCAGTGGAGGGCGAGG
GTCGGGAATACGACGCCCTACTGCCCACCACCCCACAAGGGACAGGAAGA
GCACGAGGACGATAGAACGCAGGGCTCAAACAAATGGCAGGGGGGTTCTG
TTGTGGAGCAGGCGTGAGAATCTTTGACGACAACTCGACACAGTTCCCAC
CCGTACCAGCACCACCGCCGGAACGTGATATCATCCGCCCGCGCGTCTCA
CACCCGCAGTGGAGGGCGAGGGTCGGGAATACGACGCCCTACTGCCCACC
ACCCCACAAGGGACAGGAAGAGCACGAGGACGATAGAACGCAGGGCTCAA
ACAAATGGCAGGGGGGTTCTGTTGTGGAGCAGGCGTGA
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