mRNA_H-paniculata_contig29625.8051.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29625.8051.1
Unique NamemRNA_H-paniculata_contig29625.8051.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5KDA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.160e-7
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL+YNL SL
Sbjct:   43 VDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 131
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5KRW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.810e-6
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL+YNL SL
Sbjct:  496 VDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 584
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.910e-6
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL+YNL SL
Sbjct:  467 VDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 555
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.930e-6
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL+YNL SL
Sbjct:  847 VDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 935
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.950e-6
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL+YNL SL
Sbjct:  945 VDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 1033
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.310e-6
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   40 EQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL+YNL SL
Sbjct:  275 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 357
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.140e-6
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I GY  + +   +     +LLL +VAHVPEL YNL SL
Sbjct:  310 VDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELIYNLVSL 398
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A8K0G3N9_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3N9_9COLE)

HSP 1 Score: 51.6 bits (122), Expect = 3.900e-5
Identity = 29/109 (26.61%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQLPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSLRVAVDLNYPSVIERSGVRV 348
            ++ V  +   +E WIADSGA+ HT+  ++   NY + D  T + I +G      G  K++++    +         V +VP++ +NLFS+  A+D  Y  + +    ++
Sbjct:  200 MNSVLVDFNDDETWIADSGASEHTSNQKEWFENYYEFDKPTEIKIGNGSVKNAHGKGKISLIAFEGQDYIPTESNDVLYVPDIKFNLFSIGAALDKGYTMMTDNKTCKI 308
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5LDW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDW7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.100e-5
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   40 EQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G +   I GY    +   +     +LLL +V HVPEL+YNL SL
Sbjct:  275 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKEAFAIVGYGDARVTIGSRVGTTDLLLKRVTHVPELNYNLVSL 357
[Close]
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.900e-5
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   22 LDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTIASGVQ-LPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSL 291
            +D    EQ  +E ++AD+GAT H  PS +   NY + D    L++A+G Q   I G R  TI         +LLL +VAHVPEL+YNL SL
Sbjct:  866 VDRGGVEQARQERFVADTGATNHMFPSANAFENYNECDRR--LSVAAGKQAFAIVGSRVGTI---------DLLLKRVAHVPELNYNLVSL 945
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29625.8051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KDA4_9PHAE4.160e-740.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRW7_9PHAE1.810e-640.66CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K4H5_9PHAE1.910e-640.66CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE1.930e-640.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE1.950e-640.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPC5_9PHAE3.310e-642.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFZ8_9PHAE6.140e-640.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K0G3N9_9COLE3.900e-526.61Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A6H5LDW7_9PHAE5.100e-540.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5LGF7_9PHAE5.900e-542.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29625contigH-paniculata_contig29625:479..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.1753807-CDS-H-paniculata_contig29625:478..8381622929904.1753807-CDS-H-paniculata_contig29625:478..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29625 479..838 +
1691481062.8886073-CDS-H-paniculata_contig29625:478..8381691481062.8886073-CDS-H-paniculata_contig29625:478..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29625 479..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29625.8051.1prot_H-paniculata_contig29625.8051.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29625 479..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29625.8051.1

>prot_H-paniculata_contig29625.8051.1 ID=prot_H-paniculata_contig29625.8051.1|Name=mRNA_H-paniculata_contig29625.8051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MVGVQEGLDEVQAEQEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYL
TIASGVQLPIEGYRKLTIVFKTPECNYELLLGKVAHVPELDYNLFSLRVA
VDLNYPSVIERSGVRVAMNG
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mRNA from alignment at H-paniculata_contig29625:479..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29625.8051.1 ID=mRNA_H-paniculata_contig29625.8051.1|Name=mRNA_H-paniculata_contig29625.8051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig29625:479..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGGGTACAGGAAGGGCTAGACGAAGTACAAGCAGAGCAAGAAGG
GGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCCTT
CACGGGATAATATGTTCAACTATTGTAAAACTGACGGAACAACTTACTTA
ACTATTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATAGAAAGCTGAC
GATAGTTTTCAAAACGCCAGAATGCAATTACGAACTGCTTCTGGGTAAGG
TTGCACACGTACCAGAACTAGATTACAACCTCTTTTCCCTTCGGGTTGCG
GTTGATCTAAATTATCCATCAGTAATTGAACGATCGGGGGTACGCGTGGC
CATGAATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig29625:479..838+

>mRNA_H-paniculata_contig29625.8051.1 ID=mRNA_H-paniculata_contig29625.8051.1|Name=mRNA_H-paniculata_contig29625.8051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig29625:479..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGGGTACAGGAAGGGCTAGACGAAGTACAAGCAGAGCAAGAAGG
GGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCCTT
CACGGGATAATATGTTCAACTATTGTAAAACTGACGGAACAACTTACTTA
ACTATTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATAGAAAGCTGAC
GATAGTTTTCAAAACGCCAGAATGCAATTACGAACTGCTTCTGGGTAAGG
TTGCACACGTACCAGAACTAGATTACAACCTCTTTTCCCTTCGGGTTGCG
GTTGATCTAAATTATCCATCAGTAATTGAACGATCGGGGGTACGCGTGGC
CATGAATGGCATGGTTGGGGTACAGGAAGGGCTAGACGAAGTACAAGCAG
AGCAAGAAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCAT
ACAACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACGGAAC
AACTTACTTAACTATTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATA
GAAAGCTGACGATAGTTTTCAAAACGCCAGAATGCAATTACGAACTGCTT
CTGGGTAAGGTTGCACACGTACCAGAACTAGATTACAACCTCTTTTCCCT
TCGGGTTGCGGTTGATCTAAATTATCCATCAGTAATTGAACGATCGGGGG
TACGCGTGGCCATGAATGGC
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