mRNA_H-paniculata_contig29605.8046.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29605.8046.1
Unique NamemRNA_H-paniculata_contig29605.8046.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.770e-15
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            YCTS +ADEVLY +CPK+YR  +YRMQMV RE+RG+ ADL+MLQ C
Sbjct:  461 YCTSEQADEVLYPYCPKEYRAMDYRMQMVAREVRGHAADLIMLQEC 506
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.410e-14
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            YCTS +AD+VLY +CPK+YR  +YRMQMV RE+RG+ ADL+MLQ C
Sbjct:  288 YCTSEQADKVLYPYCPKEYRAMDYRMQMVAREVRGHAADLIMLQEC 333
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: A0A818EZW9_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818EZW9_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-7
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            Y +S +A E++YS+CP+ Y E +YR  ++++E+ GY AD++ LQ C
Sbjct:  301 YASSADAAEIIYSYCPQDYLEHDYRKALLVKEILGYHADIISLQEC 346
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: T2MBJ1_HYDVU (2',5'-phosphodiesterase 12 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2MBJ1_HYDVU)

HSP 1 Score: 53.1 bits (126), Expect = 7.290e-7
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            +C S  A EVLY +CPK   + +YRM ++++EL G+ AD+L LQ C
Sbjct:  238 FCDSEYASEVLYPYCPKYALKLSYRMNLLIKELIGFNADILCLQEC 283
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: A0A821BUE5_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821BUE5_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 1.790e-6
Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            Y +S  A E +YS+CP  Y E +YR  ++L+E+ GY AD++ LQ C
Sbjct:   50 YASSAYAAETIYSYCPPDYLEHDYRKALLLKEILGYHADIISLQEC 95
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: A0A817EDF4_9BILA (Hypothetical protein n=9 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A817EDF4_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-6
Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            Y +S  A E +YS+CP  Y E +YR  ++L+E+ GY AD++ LQ C
Sbjct:  263 YASSAYAAETIYSYCPPDYLEHDYRKALLLKEILGYHADIISLQEC 308
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: A0A815PGK6_9BILA (Hypothetical protein n=5 Tax=Rotaria sordida TaxID=392033 RepID=A0A815PGK6_9BILA)

HSP 1 Score: 49.3 bits (116), Expect = 1.670e-5
Identity = 18/46 (39.13%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC 138
            Y ++ +A + +YS+CP+ Y E +YR  ++ +E+ GY AD++ LQ C
Sbjct:  222 YASTADAVQTIYSYCPQDYLEYDYRKALLSKEILGYHADIISLQEC 267
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BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Match: UPI001E272425 (2',5'-phosphodiesterase 12 n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E272425)

HSP 1 Score: 48.1 bits (113), Expect = 4.290e-5
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQ 132
            YC S  A  VL+ +CP      +YR Q++L+EL+GY AD++ LQ
Sbjct:  279 YCDSEFAHTVLHPYCPPYALHIDYRKQLILKELKGYNADIICLQ 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29605.8046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JRV9_9PHAE9.770e-1569.57Endo/exonuclease/phosphatase domain-containing pro... [more]
D7FYP3_ECTSI3.410e-1467.39Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A818EZW9_9BILA2.850e-743.48Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
T2MBJ1_HYDVU7.290e-747.832',5'-phosphodiesterase 12 n=2 Tax=Hydra vulgaris ... [more]
A0A821BUE5_9BILA1.790e-645.65Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817EDF4_9BILA1.870e-645.65Hypothetical protein n=9 Tax=unclassified Rotaria ... [more]
A0A815PGK6_9BILA1.670e-539.13Hypothetical protein n=5 Tax=Rotaria sordida TaxID... [more]
UPI001E2724254.290e-545.452',5'-phosphodiesterase 12 n=1 Tax=Melitaea cinxia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29605contigH-paniculata_contig29605:2453..2593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog2880.D7FYP3
KEGG koko:K19612
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.8133433-CDS-H-paniculata_contig29605:2452..25931622929903.8133433-CDS-H-paniculata_contig29605:2452..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29605 2453..2593 +
1691481062.7446456-CDS-H-paniculata_contig29605:2452..25931691481062.7446456-CDS-H-paniculata_contig29605:2452..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29605 2453..2593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29605.8046.1prot_H-paniculata_contig29605.8046.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29605 2453..2593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29605.8046.1

>prot_H-paniculata_contig29605.8046.1 ID=prot_H-paniculata_contig29605.8046.1|Name=mRNA_H-paniculata_contig29605.8046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
YCTSLEADEVLYSHCPKQYREANYRMQMVLRELRGYGADLLMLQVC*
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mRNA from alignment at H-paniculata_contig29605:2453..2593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29605.8046.1 ID=mRNA_H-paniculata_contig29605.8046.1|Name=mRNA_H-paniculata_contig29605.8046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig29605:2453..2593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTGCACGTCTCTGGAGGCCGATGAAGTGTTGTACAGCCATTGCCCTAA
GCAGTATCGTGAGGCCAACTACCGAATGCAGATGGTCTTGAGGGAGCTGA
GGGGGTACGGGGCCGACTTGCTGATGCTCCAGGTGTGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig29605:2453..2593+

>mRNA_H-paniculata_contig29605.8046.1 ID=mRNA_H-paniculata_contig29605.8046.1|Name=mRNA_H-paniculata_contig29605.8046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig29605:2453..2593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTGCACGTCTCTGGAGGCCGATGAAGTGTTGTACAGCCATTGCCCTAA
GCAGTATCGTGAGGCCAACTACCGAATGCAGATGGTCTTGAGGGAGCTGA
GGGGGTACGGGGCCGACTTGCTGATGCTCCAGGTGTGTTAATATTGCACG
TCTCTGGAGGCCGATGAAGTGTTGTACAGCCATTGCCCTAAGCAGTATCG
TGAGGCCAACTACCGAATGCAGATGGTCTTGAGGGAGCTGAGGGGGTACG
GGGCCGACTTGCTGATGCTCCAGGTGTGTTAA
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