mRNA_H-paniculata_contig2955.8038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2955.8038.1
Unique NamemRNA_H-paniculata_contig2955.8038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2955.8038.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.900e-37
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 3 
Query:   27 MVHLGTIVSSVGIVILLHAGYSTAHFQQFRP------AGAEDAAPLDATIEAFVGFFVCAIGVLSSAGSLLPIKGAAGGGKSLDAAESMRGFNVFHHRGRSLRKRMES 332
            MVHLGT+VS+ G++ILLHAGYS AHFQQF+        G  D+APLDA +EA VGFFVC  GVL SA +LLPIKGAAGGGKSLD+AES R F VF HRGRSLR+R+ S
Sbjct:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVAS 108
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BLAST of mRNA_H-paniculata_contig2955.8038.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.200e-27
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 3 
Query:   27 MVHLGTIVSSVGIVILLHAGYSTAHFQQF------RPAGAEDAAPLDATIEAFVGFFVCAIGVLSSAGSLLPIKGAAGGGKSLDAAESMRGFNVFHHRGRSLRKRMES 332
            MV LGTIV+ +G+++LLHAGYS AH++QF        A AEDA PLDA +E  VGF +C  GV+S+AG +LP++G AGGG+S DA E + GF VF HR   LR+R ++
Sbjct:    1 MVKLGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRRTQA 108
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BLAST of mRNA_H-paniculata_contig2955.8038.1 vs. uniprot
Match: A0A7S2V2I7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.860e-13
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 3 
Query:   39 GTIVSSVGIVILLHAGYSTAHFQQFRPAGAEDA-------APLDATIEAFVGFFVCAIGVLSSAGSLLPIKGAAGGGK-SLDAAESMRGFNVFHHRGRSLRKRM 326
            GT++  +G+ ILLHAGYS AHF+    +    A        P+D  +   +GF VC +GVL+SA  L PI  + G G+ S D   S   FN+F+HRG++L KR+
Sbjct:    4 GTVIILIGMAILLHAGYSAAHFKSLVVSSVHGADLSNVSIPPVDVVVGCAIGFSVCLLGVLTSAAPLKPIVASHGAGQGSFDEMASSPEFNIFNHRGKALSKRL 107
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BLAST of mRNA_H-paniculata_contig2955.8038.1 vs. uniprot
Match: A0A2D4BHJ5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHJ5_PYTIN)

HSP 1 Score: 52.8 bits (125), Expect = 3.620e-5
Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query:   39 GTIVSSVGIVILLHAGYSTAHFQQF-RPAGAEDAA--PLDATIEAFVGFFVCAIGVLSSAGSLLPIKGA-AGGGKSLDAAESMRGFNVFHHRGRSLRKRM 326
            G ++ +VG+++LLHAGY +  ++++ R     DA   P    +E  + F +  +GVL  AG L  I+   A   +SL +  S+  F+VF+HRG++L KR+
Sbjct:    4 GKLLITVGVLLLLHAGYYSVQYEEYVRVLEISDAQLPPFAVIVELVLSFVLSLVGVLLVAGDLQHIRSNDALHSRSLPSVTSVPDFHVFNHRGKALHKRI 103
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BLAST of mRNA_H-paniculata_contig2955.8038.1 vs. uniprot
Match: A0A7S3JYD9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYD9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.560e-5
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = 3 
Query:   36 LGTIVSSVGIVILLHAGYSTAHFQQFRPAGAEDAAPLDATIEAFVGFFVCAIGVLSSAGSLLPIKGAAGGGK-SLDAAESMRGFNVFHHRGRSLRKR 323
            L   +S +G+++L+HAG+ST H +   P       P+D  IE  V FF   I  L     L  I+ AA   + + DAA     F V HHRG+SL KR
Sbjct:    4 LSKFLSGLGMMLLVHAGFSTIHIKGLDPE--VKLPPIDVLIEVCVAFFFAVISSLMQMPELKKIRNAADLDEFATDAAFHPPEFQVVHHRGQSLAKR 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2955.8038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTM7_ECTSI5.900e-3768.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS2_9STRA5.200e-2753.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2I7_9STRA3.860e-1341.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BHJ5_PYTIN3.620e-535.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S3JYD9_9STRA5.560e-538.14Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2955contigH-paniculata_contig2955:390..2603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1232
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2955.8038.1prot_H-paniculata_contig2955.8038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2955 1260..2577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.667114-UTR-H-paniculata_contig2955:389..12591622929902.667114-UTR-H-paniculata_contig2955:389..1259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2955 390..1259 -
1691481062.2483578-UTR-H-paniculata_contig2955:389..12591691481062.2483578-UTR-H-paniculata_contig2955:389..1259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2955 390..1259 -
1622929902.7155282-UTR-H-paniculata_contig2955:2577..26031622929902.7155282-UTR-H-paniculata_contig2955:2577..2603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2955 2578..2603 -
1691481062.2856631-UTR-H-paniculata_contig2955:2577..26031691481062.2856631-UTR-H-paniculata_contig2955:2577..2603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2955 2578..2603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.683438-CDS-H-paniculata_contig2955:1259..14601622929902.683438-CDS-H-paniculata_contig2955:1259..1460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2955 1260..1460 -
1691481062.2648323-CDS-H-paniculata_contig2955:1259..14601691481062.2648323-CDS-H-paniculata_contig2955:1259..1460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2955 1260..1460 -
1622929902.6976385-CDS-H-paniculata_contig2955:2442..25771622929902.6976385-CDS-H-paniculata_contig2955:2442..2577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2955 2443..2577 -
1691481062.2739022-CDS-H-paniculata_contig2955:2442..25771691481062.2739022-CDS-H-paniculata_contig2955:2442..2577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2955 2443..2577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2955.8038.1

>prot_H-paniculata_contig2955.8038.1 ID=prot_H-paniculata_contig2955.8038.1|Name=mRNA_H-paniculata_contig2955.8038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MVHLGTIVSSVGIVILLHAGYSTAHFQQFRPAGAEDAAPLDATIEAFVGF
FVCAIGVLSSAGSLLPIKGAAGGGKSLDAAESMRGFNVFHHRGRSLRKRM
ESRSSSDNSSR*
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mRNA from alignment at H-paniculata_contig2955:390..2603-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2955.8038.1 ID=mRNA_H-paniculata_contig2955.8038.1|Name=mRNA_H-paniculata_contig2955.8038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig2955:390..2603- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGGGAAGCATCCAGAGCATCGACAATGGTTCACCTAGGTACCATCGTG
TCCAGTGTAGGAATCGTAATCCTCTTGCACGCTGGCTACTCCACGGCACA
CTTTCAACAATTCAGACCCGCTGGCGCTGAAGACGCAGCTCCATTAGATG
CCACAATCGAGGTGTGAAGCTCTACAGTAGTTTTGCACTCAAGCCGAATA
GTCTACGCGGCAGCGGTTTCGTTGTTGTGTGCACCCGCCTAGCAGCCAGT
CTACACCTGCCGTATTACAGGTATTGCTTGTAACACAAGAATGATATCCT
ATTGGCGTTTATTCCGAGGGCTCCACAGGTGGATGCTTGCCTGTTTTTGT
GATACCGTGCGTTTCCCATTTGTTCCGCGATAATTTTGCAAATCTGGAGT
TTAGTTGACAGCGGTATCGGTGGTAGTTGCGGGTTTGTTACATCCTTGGA
TAATTTCTTCTGTAATAACCTCTGGTGGGTGGGCTGTTCCTAGCGAGCTC
GTTCCTGGGCATCGCTAGGCCGTGGGAGTTTCAACTTCATCCTGCCTCTA
AAATACTGAAAACTTCCAACCATAGGCATATTTACACACGTACGATTATG
GAGGTTCATTGTTTTTGGTATCTCGGCCGAGAGAACCCCACGACAAATTG
GGTCATGTATATATTTTCATGAAAAATTACGTCGTGGTATATTATTGCTT
CTGTTGCGCCATATTGCTCACCATTTTTCCCGCTAGCTTTCACCCAGGGA
TCCCAAGCGAAATTCTGGAATTTGACCGTAGCGCACCCATTTTTGTGACA
TTTTCCCCAAACTATGGCCTGAACAAACGATACGGTCGATGCGGTCACCT
TACAAAAAAAATGTAAAAAACGAAATTTTTCACATCGAGGTACACCACAG
TTATGCTCACATTCGAGCCTCTCCAGCCACAGCAAGCTGTGCTTATGTGC
TGTGCCGTAGGTGATGTTTTTTATTTAGTACATGAAAACGAGGACCATAC
ACGGACTCCACGAGCGTTAGCCGGGACTGTGGTACTTCTAGAAATACATG
CCCTCATTTTGTAAGCCCATCAGATAGACATGAAATACTTGAGGTCACCT
GGCATCTCTTTTTCATTGGTCCCCTAACCTCCAATGCATGCAGGCGTTCG
TGGGATTTTTTGTCTGTGCGATCGGGGTGTTATCAAGCGCCGGATCGCTG
CTACCAATAAAAGGAGCGGCTGGTGGAGGGAAATCTCTGGACGCAGCGGA
ATCGATGCGAGGTTTTAATGTGTTCCACCACCGAGGAAGGTCGCTCCGGA
AACGCATGGAAAGCCGCAGCAGCAGCGACAACAGCAGCCGGTGACGCGGC
CGGAAAAAACAACAAAAACTTCCCGTGTTCCTCTCCCCATCTGCGTTGCC
ATATTTCTTTCGTTTTTTTTCTTTTTTTCGAGTCTAAGTTCTTTGTAGCA
GCCCATTTAGGTAGAGGTATTGGGGGTTAGTTCGAAAAGCGGACCAGAGA
CTGAGTGAACAAAGATGCAATGATACTAACGTTGTGTACTGGTAGAAATG
AACGATACAATATGTATCGGTTGCGCGCAGCGCCAGGGCGACGCAGCCGC
CCCCAGCTGGTGAAGGCCCGCTGGAAGCGCTACCGGGGTCAAGAAAACTG
TGTATTTTGGCTTAATCTCTCGTCAAAATCAGATCAAAACATTGAGCAAG
AGATGGGCAACAAACCCGACGTTAAACCCAATTAATCGATCAACACATAA
ACATAGTCAGGCGATGATGGCAAAGACCTGAGTGGCAGGCCGTGGCCGGG
CATTTCAGTGCTGTTGGGATGTTGTTCAGCTCTGCTTGTGGATTATGTTT
TGAGGTGTTGTAAATCAAAACTAATGCAACGAAGAAATTCACTCAAAAGC
GGTACTTCAAAGCATCCAAGTATCTGCCAGCTAAATAAGCCGAGAAATTG
ATAAGAAATAAAACACGCTGTACTGTACTTGATAAGCGAGAAGTGACATC
GGATCATGTGAACAGAGAATGGAGCATTGACGGAGAATGATATTTGCGGA
TGGCTGCCAGTTGAGAGGTGCAAAAATAACAACTCAGAAACATTTTAGGT
ATTTCGGGGATGTGAAGAAGATACAAAAGCAAGAAGTATACGGGCAATGT
GTCCTCCAACATGCAGAGGCCTGATCTCAAAAGACACATTAAATACTTCC
CACACATGACGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2955:390..2603-

>mRNA_H-paniculata_contig2955.8038.1 ID=mRNA_H-paniculata_contig2955.8038.1|Name=mRNA_H-paniculata_contig2955.8038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig2955:390..2603- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCACCTAGGTACCATCGTGTCCAGTGTAGGAATCGTAATCCTCTT
GCACGCTGGCTACTCCACGGCACACTTTCAACAATTCAGACCCGCTGGCG
CTGAAGACGCAGCTCCATTAGATGCCACAATCGAGATGGTTCACCTAGGT
ACCATCGTGTCCAGTGTAGGAATCGTAATCCTCTTGCACGCTGGCTACTC
CACGGCACACTTTCAACAATTCAGACCCGCTGGCGCTGAAGACGCAGCTC
CATTAGATGCCACAATCGAGGCGTTCGTGGGATTTTTTGTCTGTGCGATC
GGGGTGTTATCAAGCGCCGGATCGCTGCTACCAATAAAAGGAGCGGCTGG
TGGAGGGAAATCTCTGGACGCAGCGGAATCGATGCGAGGTTTTAATGTGT
TCCACCACCGAGGAAGGTCGCTCCGGAAACGCATGGAAAGCCGCAGCAGC
AGCGACAACAGCAGCCGGTGAGCGTTCGTGGGATTTTTTGTCTGTGCGAT
CGGGGTGTTATCAAGCGCCGGATCGCTGCTACCAATAAAAGGAGCGGCTG
GTGGAGGGAAATCTCTGGACGCAGCGGAATCGATGCGAGGTTTTAATGTG
TTCCACCACCGAGGAAGGTCGCTCCGGAAACGCATGGAAAGCCGCAGCAG
CAGCGACAACAGCAGCCGGTGA
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