mRNA_H-paniculata_contig2950.8026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2950.8026.1
Unique NamemRNA_H-paniculata_contig2950.8026.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A6H5LLH5_9PHAE (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLH5_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 6.180e-117
Identity = 177/235 (75.32%), Postives = 207/235 (88.09%), Query Frame = 1 
Query:    1 VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATV-MLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGE-HGIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDLS 699
            VG+VRRALS+++ERLE NR + +E +L GELEYLEG+S+E  FWN+A SARK LGD+NRLK+Q++RL  WR WEADAETVIELCGE  EGDD+ T  MLDEA EA++LLQ+DLD+WE++QLLSGKYD CGCRLTI AGAGG +A DWA MLQRMY+R+F+RR FKY IVEEE+GE  GIKSCE+QVEG+FAYGYLAGEKGTHRLVRQSPFNAQ+KRQTSFAGVES PIIEQ+DLS
Sbjct:   85 VGDVRRALSSARERLEKNRQLFDEARLEGELEYLEGVSSEAEFWNDANSARKTLGDLNRLKLQLDRLYRWRGWEADAETVIELCGEE-EGDDEETAAMLDEATEALQLLQRDLDAWEMQQLLSGKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKIVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLS 318
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BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 3.790e-114
Identity = 174/234 (74.36%), Postives = 204/234 (87.18%), Query Frame = 1 
Query:    1 VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGE-HGIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDLS 699
            VG+VRR LS+++ERL  NR + +E KL GELEYLEG+S+E  FWN+A SARK LGD+NRLK+Q++RL  WR WEADAETVIELCGE   GD++   MLDEAMEA++LLQ+DLD+WEL+QLLSGKYD CGCRLTI AGAGG +A DWA MLQRMY+R+F+RR FKY +VEEE+GE  GIKSCE+QVEG+FAYGYLAGEKGTHRLVRQSPFNAQ+KRQTSFAGVES PIIEQ+DLS
Sbjct:   87 VGDVRRGLSSARERLGKNRQLFDEAKLEGELEYLEGVSSEAEFWNDANSARKTLGDLNRLKLQLDRLHRWRGWEADAETVIELCGEEEGGDEETVAMLDEAMEALQLLQRDLDAWELQQLLSGKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLS 320
[Close]
BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A835Z7S5_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S5_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.580e-79
Identity = 126/210 (60.00%), Postives = 155/210 (73.81%), Query Frame = 1 
Query:   76 KLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEG--DDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGE-HGIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDL 696
            KL GEL YLEG+ +E GFW++A +ARK L +  RLK QV+RL+ W  W  D E+ +EL  + G+   D +A  + +EA   +    KDLD+WELE+LLSGK+D  G +LTI AGAGG +A DWALMLQRMY RYF+R+ F Y ++EEE GE  GIKSC I VEG   YG LAGEKGTHRLVRQSPFNAQ+KRQTSFAGVE+ P++E EDL
Sbjct:    5 KLTGELAYLEGVCSEAGFWDDAAAARKTLAESTRLKSQVDRLDRWAAWGGDVESALELLAD-GDALSDAEAVALAEEAAATLDAWAKDLDTWELERLLSGKFDNAGTQLTIQAGAGGTEAQDWALMLQRMYTRYFQRKGFSYKLIEEEPGEVAGIKSCRIDVEGPLCYGLLAGEKGTHRLVRQSPFNAQAKRQTSFAGVETFPVLELEDL 213
[Close]
BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A7S2UWG0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG0_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.410e-71
Identity = 115/233 (49.36%), Postives = 163/233 (69.96%), Query Frame = 1 
Query:    1 VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGEH-GIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDL 696
            +  +++ L    ER+E N  ++    L+GE++ LEG ++E   W++    + +   +  LK ++E+ E W+RW+ D ET  EL  +     ++A ++++EA++  R LQKDLDS+ELEQ+L G YD C CRLTI AGAGG DA DWA ML RMY RY ER+ ++ T+++E  GE  GIKS E+++ G FAYG LAGEKGTHRLVR SPFN+ +KRQTSFAGVE++PI+EQ+DL
Sbjct:   84 ISSLKKDLQGFHERIERNVDLVGILALKGEIKDLEGQASESSLWDDPARGQALTSKLGFLKGRLEQTERWQRWQGDIETACELGADPDLDSEEAAMLVEEALDISRNLQKDLDSFELEQMLGGPYDNCPCRLTIQAGAGGTDAQDWAAMLLRMYRRYAERQGYQVTLIDEMEGEEAGIKSAELEITGPFAYGRLAGEKGTHRLVRLSPFNSSNKRQTSFAGVETIPIVEQDDL 316
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BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A7S1T7C5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7C5_9RHOD)

HSP 1 Score: 219 bits (558), Expect = 2.250e-66
Identity = 109/237 (45.99%), Postives = 160/237 (67.51%), Query Frame = 1 
Query:    1 VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEV---GEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGEH-GIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDLS 699
            VGE+RR LS  +ER+E N G  +    R  +  LE ++AE  FW +AV A++ +  +N  +  ++    WR+   D E  +EL G+    G GD++   +L+EAM+ +R +  +L+ WE+ ++ SG YD CG  +T+ AGAGGVDA DWA ML+RMY+R+ ER+ ++  +VEE  GE  GIKS  +++ GE+AYGY++ EKGTHRLVR SPFNAQ KRQTSFAGVE +P++E + ++
Sbjct:   22 VGEIRRRLSGVRERVEQNEGDADLDVFRAAVRELEAMTAEPDFWEDAVQAQRTMQRLNANRQVLDSYAKWRQVLQDTEATLELVGDDAGDGGGDEEVQSLLEEAMKDLRSVDSELEQWEIRKMFSGDYDRCGAVVTVLAGAGGVDAQDWAEMLKRMYIRWAERQGYRVEVVEESEGEEAGIKSVTLEISGEYAYGYVSAEKGTHRLVRISPFNAQGKRQTSFAGVEVMPLLEDDQVN 258
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BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: UPI001688801F (peptide chain release factor 2 n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI001688801F)

HSP 1 Score: 206 bits (525), Expect = 8.230e-62
Identity = 114/227 (50.22%), Postives = 148/227 (65.20%), Query Frame = 1 
Query:    7 EVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGEH-GIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIE 684
            E++R +    ERL   +  L+ P L   ++ LE L+A+  FWN+   A+K L D+N LK  V +L++WR    D   V+EL  E+ E DD    +L EA++ V  L  DLD WELEQLLSG YD  G  LTINAGAGG DA DWA ML RMY R+ E+  +K  + E   GE  G+KS  ++++G +AYGYL+ EKGTHRLVR SPFNA  KRQTSFAGVE +P+I+
Sbjct:    5 ELKREVETLSERLGKTQDYLDLPALNARIQDLEQLAAQPEFWNDQFQAQKTLQDLNDLKSNVSQLDHWRSSLEDTRAVLELL-EL-EADD---ALLTEAVQTVHKLSSDLDRWELEQLLSGLYDDKGAILTINAGAGGTDAQDWAEMLLRMYTRWAEKHNYKVHLAEISEGEEAGLKSATLEIDGRYAYGYLSAEKGTHRLVRISPFNANDKRQTSFAGVEIMPLID 226
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BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: UPI0016835605 (peptide chain release factor 2 n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016835605)

HSP 1 Score: 205 bits (522), Expect = 2.380e-61
Identity = 110/235 (46.81%), Postives = 157/235 (66.81%), Query Frame = 1 
Query:    1 VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWR-RWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVE-EEAGEHGIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDLS 699
            + +++R L     RL   +  L+ P L  ++  LE  +A+  FW++  SA+K L  +N LK  +E+++ W+  WE D+  + EL     E +DD T +L+EA   ++ L++DLD WEL+QLLSG+YD+ G  LTINAGAGG DA DWA ML RMY R+ E++ +K  + E  E  E GIKS  ++++G +AYGYL GEKGTHRLVR SPFNA  KRQTSFAGVE +P +E+ +++
Sbjct:    3 ITDLKRDLQTIATRLGKTQDYLDLPALNAQIHDLEQSAAQPNFWDDQTSAQKTLQRLNDLKSNLEQMQQWQSEWE-DSSAIAELL----EQEDDQT-LLEEAASTLQRLERDLDRWELQQLLSGQYDSAGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEKQGYKVHLAELSEGDEAGIKSVTLEIDGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEIMPALEENEIA 231
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BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A0G4ETN2_VITBC (RF_PROK_I domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETN2_VITBC)

HSP 1 Score: 207 bits (526), Expect = 7.140e-61
Identity = 105/233 (45.06%), Postives = 151/233 (64.81%), Query Frame = 1 
Query:    1 VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGEH-GIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDL 696
            V EV+R L   +ER + N  + + P +  E++ ++  + +E FW++   A K+   + RLK     +E WRR   DAE  I+        D +    L E++  ++ L + +DSWELE+L+ G YD  GCRL + AGAGG ++ DWA ML RMYLR+ +R+ ++  +V+   GE  GIKS E+++EGE+AYG L+GEKGTHRLVR SPFNAQ KRQTSFAGVE++PI+  ED+
Sbjct:   81 VNEVKRTLDTLRERYDRNVELADLPSIGREMDSIQRETTKEDFWDDPARASKLSARLQRLKESRSSVEGWRRSLEDAEAAIDFVTSEELSDAERNEFLAESVTTMKRLSRHMDSWELEKLMDGPYDRVGCRLYVTAGAGGTESCDWADMLLRMYLRFAQRKGWRARVVDRSDGEEAGIKSAEVEIEGEYAYGLLSGEKGTHRLVRISPFNAQGKRQTSFAGVETMPILPDEDV 313
[Close]
BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A4D9D036_9STRA (RF_PROK_I domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D036_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.400e-60
Identity = 113/232 (48.71%), Postives = 150/232 (64.66%), Query Frame = 1 
Query:    7 EVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGEHG--IKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQEDL 696
            E++RAL+ +   +E N   LN PK+ GE++Y E  +A+E FW     AR+ +  +  L+  V R++ WRR   D  T + L  E G G++       E  + +R LQ+DL +WE++QLLSG YDACGCR+ I AGAGG DA DWA ML RMYLRY ER+ +K  ++E++    G  IK   ++VEGE AYG L  E+GTHRLVR SPFNA  KRQTSFAGVE +PI+  E L
Sbjct:   80 ELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRLYEDVATALALWEEGG-GEEWGV----EGKDGMRKLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERL 306
[Close]
BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Match: A0A4P7ZWS6_9SYNE (Peptide chain release factor 2 n=31 Tax=Cyanobacteria TaxID=1117 RepID=A0A4P7ZWS6_9SYNE)

HSP 1 Score: 202 bits (515), Expect = 3.120e-60
Identity = 112/229 (48.91%), Postives = 151/229 (65.94%), Query Frame = 1 
Query:    7 EVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSARKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDEAMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALMLQRMYLRYFERRRFKYTIVEEEAGEH-GIKSCEIQVEGEFAYGYLAGEKGTHRLVRQSPFNAQSKRQTSFAGVESLPIIEQE 690
            + +R LS   +RL   +  L+ P L+   + LE L+++  FW++   A+  +  ++ +K Q+E+L  W+   ADAE  +E+ G   E D++   +L E+ EA++ L+ DLD WELE+LLSG YD  G  ++INAGAGG DA DWALML RMY R+ E    K T+ E   GE  GIKSC I++EG +AYGYL  EKGTHRLVR SPFNA  KRQTSFAGVE +P IE+E
Sbjct:    6 DFKRDLSELTDRLGNAQDCLDVPALKARQQDLEQLASQPDFWDDQKQAQAKMRQLDEVKAQLEQLSQWQGAVADAEATVEIYGL--EPDEE---LLSESNEALQKLRSDLDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVMPKIEEE 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2950.8026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LLH5_9PHAE6.180e-11775.32RF_PROK_I domain-containing protein n=1 Tax=Ectoca... [more]
D7FJS9_ECTSI3.790e-11474.36Peptide chain release factor n=1 Tax=Ectocarpus si... [more]
A0A835Z7S5_9STRA2.580e-7960.00RF_PROK_I domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2UWG0_9STRA1.410e-7149.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1T7C5_9RHOD2.250e-6645.99Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
UPI001688801F8.230e-6250.22peptide chain release factor 2 n=1 Tax=Leptolyngby... [more]
UPI00168356052.380e-6146.81peptide chain release factor 2 n=1 Tax=Oscillatori... [more]
A0A0G4ETN2_VITBC7.140e-6145.06RF_PROK_I domain-containing protein n=1 Tax=Vitrel... [more]
A0A4D9D036_9STRA1.400e-6048.71RF_PROK_I domain-containing protein n=3 Tax=Monodo... [more]
A0A4P7ZWS6_9SYNE3.120e-6048.91Peptide chain release factor 2 n=31 Tax=Cyanobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2950contigH-paniculata_contig2950:768..6717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.1
Seed ortholog evalue6.4e-96
Seed eggNOG ortholog2880.D7FJS9
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930,ko:K02836
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003730,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006412,GO:0006415,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0016043,GO:0016070,GO:0016149,GO:0019219,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031329,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043565,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
EC6.3.2.17
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012
Exons4
Model size702
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2950.8026.1prot_H-paniculata_contig2950.8026.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2950 768..6717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.339595-CDS-H-paniculata_contig2950:767..9561622929901.339595-CDS-H-paniculata_contig2950:767..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 768..956 -
1691481061.700377-CDS-H-paniculata_contig2950:767..9561691481061.700377-CDS-H-paniculata_contig2950:767..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 768..956 -
1622929901.3706071-CDS-H-paniculata_contig2950:2039..22431622929901.3706071-CDS-H-paniculata_contig2950:2039..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 2040..2243 -
1691481061.717805-CDS-H-paniculata_contig2950:2039..22431691481061.717805-CDS-H-paniculata_contig2950:2039..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 2040..2243 -
1622929901.3883996-CDS-H-paniculata_contig2950:4660..47931622929901.3883996-CDS-H-paniculata_contig2950:4660..4793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 4661..4793 -
1691481061.7280555-CDS-H-paniculata_contig2950:4660..47931691481061.7280555-CDS-H-paniculata_contig2950:4660..4793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 4661..4793 -
1622929901.4073744-CDS-H-paniculata_contig2950:6541..67171622929901.4073744-CDS-H-paniculata_contig2950:6541..6717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 6542..6717 -
1691481061.7378542-CDS-H-paniculata_contig2950:6541..67171691481061.7378542-CDS-H-paniculata_contig2950:6541..6717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 6542..6717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2950.8026.1

>prot_H-paniculata_contig2950.8026.1 ID=prot_H-paniculata_contig2950.8026.1|Name=mRNA_H-paniculata_contig2950.8026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
VGEVRRALSASQERLEMNRGILNEPKLRGELEYLEGLSAEEGFWNEAVSA
RKVLGDMNRLKVQVERLENWRRWEADAETVIELCGEVGEGDDDATVMLDE
AMEAVRLLQKDLDSWELEQLLSGKYDACGCRLTINAGAGGVDAMDWALML
QRMYLRYFERRRFKYTIVEEEAGEHGIKSCEIQVEGEFAYGYLAGEKGTH
RLVRQSPFNAQSKRQTSFAGVESLPIIEQEDLS*
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mRNA from alignment at H-paniculata_contig2950:768..6717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2950.8026.1 ID=mRNA_H-paniculata_contig2950.8026.1|Name=mRNA_H-paniculata_contig2950.8026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5950bp|location=Sequence derived from alignment at H-paniculata_contig2950:768..6717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGCGAGGTCAGGCGTGCGTTGTCTGCATCCCAAGAGCGACTAGAGAT
GAATCGGGGCATCCTGAACGAGCCCAAGCTCCGCGGGGAACTCGAGTATC
TGGAGGGCTTGAGCGCGGAGGAGGGCTTTTGGAACGAGGCAGTGAGCGCC
AGAAAGGTGCTTGGAGATATGAACAGGTGTGTTGATGTGTACCCTCCATG
GTTCTTGCTACCCTGTCACGTGTGTGCTGGTTGTGTTTTCTGTGCTTCTA
TTGTCATTGTTTCTGTGTTAGCAACGGATTTTCGCGCAGGCATGGCGGTC
AGTACCGAGCAGCACCCACCATATGTTAAGAGTCTCGAAGGGGTGTTGTG
CAAGATTACGGCGAAACGGTGCGTTGTGATGCCCTGGGTCGCGTTATTTC
TGTTATCTACCATTGCGTTAATGTAAGGGTGGGGATCTGTTTGTACTCGG
TAGGGTTGCTTGTGATGGAGTGTGGAGTTGGGACGAACATGTGTCATACA
TGTGAATATCCAAGGTTGCGTGGTCTTCTTTTAAGCTTTAAAGTTTGAAA
TGAGCGGCTTGGTCGTGATGGATGATGTCGGGTAACAGATAGCACAAGTG
GTGATTGGGCATCGATCACGCGCTTTGCCGACGGGGTTGTGCGCTCCGAC
GCACATTGCAGTCGTGGCCAGGTTGGCAGTGCGCATCGCTTGACAATACA
GACGGCAGCGATCATCTTAACGTCATCATTCACAGTATAGTCAGTATCTG
TGTATCAAATAAAAAAAAATAATGTAGACGATATGACAACTAAATAGCCT
TCTGAAAAATCACCTGTTCCCTGTTCGCACGCGTTAAATCTGAATACGTA
TCTATTTAATACCTTCCGTGACGGACCACGTAATTGATATCTTCGGTGTA
CTGTACTGTATGTTCTAATTATTACTGCATATTTTTCTGTTGTTCTGTAG
CACGCATCGGTACATCGTTTTAAAACTAGGACGCAAAACATGCCGCAAAA
GTTTATCTCTAACGCATGCTTACGAGGAAGAAGGGGGGGGGGGGGCGTAC
ACATGTTTTGTATGTCGTAGTTATGAGACTATTGACATCCGATAGTCATT
AGATAGTCTACGGGGGTTGGAGACTACCAGGAGACTGTCGGATGTCAGAT
GGAAAAAAATTGACGTTACCAATGCGTTCTTTTGTAAAAATATGCAAAAG
CCCATGGTCGACGTAAAACGGCTTGCTGCCTGCGCGCATGCAGGCACGAT
GTTCATGAAAATTCCTTATTTAGAATTACTCGAGGACTAAAGGGAAAACA
TGTTCCCAATCGTTGACCAATATCAAAGTGGCGTATTATTCAATAGGGGA
ATACACGTGTTATTAAGCTGCCTTATGTCAACGTACAGATTCATATGTGG
CGTTGTTGAAGCGATTGATCCAGCGGGTTTCTCTTTGTTCCTTGGTGTGA
AGAGCACGTTCGTGGGGTTCCTGGGGTTCCTGCACCCCTTGCTTCTTCCT
GCATGATATCCAAGGCCATTCCTGTGCCATTATCGAGATAGCTTTCTCAT
TGGTTCCGACCGTAAATGATGACCATTTCATCTGCAACACAGAGTAATGG
AGAGTTAGAACCAACCACAAGAACAGGCGTTGGCTCTCTCGAGAATTAGT
GTCTCGTTCGAATATCGCATTCTCACTAGCCTCCCCACATTTGCTTGTAC
CTCCATAGGACAGTTGAAATTCCTCCTACTTCTCATGTATGGCTAGTTTC
AATCATTGAAGAAAAACGCCTCATTTTTTCGTACTTTATTTTTCATCCTA
GCATTTTTATTTCGAAATATTTGGCGTTGTTGTTAAAAAAAAAATGTGTC
CTAACTCTTGGGGAAAAAGATGAAGTGTCATAGTATAAAAAGACGATGAA
ACCGTTTGTTTTTTTTTGTCCAAGGTTGAAGGTGCAGGTGGAACGATTAG
AGAATTGGCGGAGATGGGAGGCAGATGCAGAGACCGTTATAGAGCTGTGC
GGGGAGGTGGGCGAAGGAGACGATGATGCTACCGTCATGTTGGACGAGGC
CATGGAGGTGAGTGTGCAGTACCGTTCTTGTCATTCTCCAGAGTGTATCA
CGTAGTATAACACCCCCGGGACTCGGGCTACGGTAGAGGGGGGAGTATTT
TGGGCCGATTTGTTTCGAGTTTTTGAGCCGCTTTGCGGAACGGCTGAATA
GGCCAAGTACTTTTCCCCTCAACCATTTGAATCCTTGAAAAAAGTGTAAT
ATATAGGTCGATGGAAGAGACACATCTTTTTCACCAAGCCCAACGCCAAA
TTACCATTCATGTACGTCATCACTCGTGTTGTCATGTTCCAACTGCGACG
ACTACTGTGGCGGGCTGTCAGCTGCTGCGTCTGTAGGTGCCGTTACGCGT
AACAGGACGCCCGCCATACACGCAGCGGCTGTCGCTCGCTGGGGAACTGC
CGAGAGATGCCGATGCCTGCCAACCTATTTCTCTCTCTTCGTTGTGTTGC
TGTTACCGCAGTAGTATCACCGGGCAGATATATGTGCATGGTTTTTTTAG
TAGTACACCAGCATCTTCATGCGTTTTACTTTACTGACTGTATCAGGCCC
TGCGAAGCTGTAGTACTTTGAATAATATGGTGGTGCTGACTAGTAGAAAT
AACCTTGTTTTCAAAGATTTTTTTCTCACCTAAGGCTGCCGAATCAGCCA
GGGTGTGGGGGGGATACAAATTGAAGCACTTCACCGTCTTGACAACATGC
CGTTGGAAAATTTCAAATTGGGCAACATTTGATTTTCCGACAAGTTCAAG
ACTACCCGTTCAAAACATGTGATACTTCTTACTTGTGGCCATCATGATAC
GATTGAACCAGTGTGTGTGCTGCAATCTGTCCGCTCACTACCTCCACATC
AAGCGACAACTGTCAAAACATGGCGTTGCAATGGTTGAGATCAAAATGGT
CACTCTGACCTCTTTTGCTTCTAGAGTCCCTGGCTACTATCCCTTCCGTA
GTACGTTTTCTCATTTTGTGTGTCTCATGGTTATGTTCATCTCGTGGAAC
TGTACATTGCACAGCGGCATAACGTCATCTCTGCCGACAAAAATCCGTCC
CAAATGGGTACCCTCCGCCCCCTTCTGTCAAAACGCATCCTCCCCTCCAT
CTTGGGACACGGGACTGTGAGATTTCGCATGTCTCAAAATGTCACACTGC
AGGACCCCAGGAGTCAAAGGATTAACGACATGGCCATTCCGAATCGTGCA
TTGTGCATGCACACCATTGGGGATGCGTGAACGCATACCATTGAAAAGGT
TTTGATTTTAGTGTATTTGTTTTTCAGCCACTTTCCGGAGCGGCGCTCGT
TGAATACCCGGACGTTGTAACGGCCAAATATATATATTTATATATATATG
TGTGTGTGCTAATGACCGTTTCATACATACCGAGGAAAAAACTCTTTAAA
ATGCTTCACACGTCGAACGGATCATGATCGGGCTGGCCAATTACTTGCTA
TTAGTCATGTACATGATCCATAGCTCCTTGGGCCTTGTTCCCAGCTTCGC
TCCCTACAGCGCTGGACGCCGAGCACGCAGAGTATCGCAGAACTTGCGGT
TGGATATCTCTAATCAGCGGTCACGTCTTTTTTGTTTTGGTGGGACCAAC
GGGGTCTGTCTGACATGTCCTATTTTTACTGATTAAGGCGTATCGTGATT
CGTCCAACGTTTGAAATCCTTACTTGATCGGTTTTTTGACAGCTGATCAA
TGTATCTCAGGTTCTAAAGGGCAGTAAGTTTCTGCCTTTTTGAGCTCCTG
CTCTACAGCTCCCAGTCTTAGGAATTTTGAAAAACAGGAAAATGTAGAGT
GTCGGTTTGGCATGTTTTTTTCGCGCAACGTATACAATTGTCGTTATCCA
AGAGTAGAGTTGTCATCATCCAATGATCTCGCCCGATCGAGGTCTGTAGC
GCGCAAATTTAGGGTAAAGATGACACAATATTTCCATATGTAAACAGAGT
TGACTGCCTTGTTCTAGATGTCAATGTCGATGGATGGTTGCAGTAAATCT
GTTCATATCGTAATTAAATGTGATGGATGTGTGCGGCGTCCTCGCTTTGG
AAAAAAAAAGAGAAAAAAAAAGCTCCGGCATCCTAAACATGTTGTATGTA
ATTCATTTCACCGGGAAAAAAACGCCTCCATGGAAATACCCCTGAAAAAA
TGAGTTTCAGAGTATTTGGATAAAAGTCCGAGTGCACGTCTTTTCTCGTT
TTTTGTCGCCAACACCGTTAGAAATCATGATAACACACAATTTTCCTCGG
AAGTTGTTTCCGCCACTTTAAGCCATCCATCGGAAATCGCTCTGATAGGA
GTAAAGCTCTGTCTTCCCGAGGACAGGGCCAATGGTCCAAGAACCACGGC
ACGCGATACATAAGTACGCCCCTCCCCAACCCCCACCCCTGCTGCCCGCC
CCAAACACGCCATGCACAACAAAGGCCGTGAGACTCCTCCAGAAGGACCT
GGACAGTTGGGAATTAGAGCAGCTGTTATCAGGCAAGTATGACGCCTGTG
GGTGCAGGTTGACGATCAACGCCGGGGCAGGTGGCGTGGACGCGATGGAC
TGGGCGCTCATGCTGCAGCGTATGTATCTGCGGTACTTCGAGAGACGCAG
ATTCAAATACACCATCGTCGAGGAGGAGGTGAGGTGTAAATTTTCAAGTT
TTGGGGGGGTGTTGCGGCCTGTCTTAGCGAGATAGATGAATCGATCCCTG
AATCGTGATCCTGCGCTTTCCTAAACCGCGGCCCCGCGTATAATAATGTC
CATTATTAGTATCTTTGTACTAGAGGTATTTATCTCAGACTGACCCGAAA
CCATCCTTGTGTTGAACGCTCCTTACAGATCAAAGTTGAGTGTGCTTCGC
ATAAATACATGTCTGAATCTAAACGCCAAACCGGAGCCCGAGCGCAGCCT
CCGCGTGAGCGAATCTTGCGTAGGAGCATGCACTGCAATGGTTCTCTTGA
GTACTGTTAACGAAAACGACCGTTAACCCCTATGGCCCCAGACCCTGAAC
AATCCATACATGATCCCTGGCTAGAAATGGTGCCCTGTGCGAAAGTTTAA
ACAAAGACACAACGTCTCCGCAAAGGTTATAAAGGGTCGAGGGGCACGAC
ATACATATTTTAATCATACTCTTCATGTATGTTCTTTAACCCCCCCCCCC
CCTCACGGCGGTTTCGCCCCGGGACTTTCAGGTTCCTTCATTGTTCTTTT
TCAGGCTCCGATACCAAAGGGGTCAAGCTGTTCAAGGTTGACAGTTGCGT
CTCGTCGGTGTCAGCCTCGTATCCCTCAAAATAGTCGTGAAAAAGAGGAG
TGAGTAACGAGCGGTAGCGTGTTCGACCCCGAGAAAAAGATCCGAACGGA
AGTCAAAGCTTACATTTCCCCCCCCCCCCCCCCCCCCCCCCCCGGCGGGG
GCATTTGGGTACTACCCCCTGTCCAACACGTAGGACAGCACTGTCTGTCT
CAAGATGTTACACCAGATAATGAGGCTGATGCGACTTATGCAGGGGATTT
ACACTACTATGTAGCAGAAGCGCGGAGTTCGTTCCGCGGAACGCGCCAAG
GGATCTGATTGGCCAATTTTGACCCTCCTCGTTCAACCGTTGGACGACAT
AAACTCGGACGGTTTTGCTACTGCTACTGCTATTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTATT
TACATTACCAGGCTGGGGAACATGGCATCAAAAGCTGCGAGATTCAGGTG
GAAGGAGAGTTCGCCTACGGCTATCTAGCCGGAGAGAAGGGGACGCACCG
GCTAGTGCGTCAGTCGCCTTTCAACGCGCAGAGCAAGCGGCAGACGAGCT
TTGCCGGGGTGGAGTCGCTGCCCATCATCGAACAGGAGGACTTGTCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2950:768..6717-

>mRNA_H-paniculata_contig2950.8026.1 ID=mRNA_H-paniculata_contig2950.8026.1|Name=mRNA_H-paniculata_contig2950.8026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig2950:768..6717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGCGAGGTCAGGCGTGCGTTGTCTGCATCCCAAGAGCGACTAGAGAT
GAATCGGGGCATCCTGAACGAGCCCAAGCTCCGCGGGGAACTCGAGTATC
TGGAGGGCTTGAGCGCGGAGGAGGGCTTTTGGAACGAGGCAGTGAGCGCC
AGAAAGGTGCTTGGAGATATGAACAGGTCGGCGAGGTCAGGCGTGCGTTG
TCTGCATCCCAAGAGCGACTAGAGATGAATCGGGGCATCCTGAACGAGCC
CAAGCTCCGCGGGGAACTCGAGTATCTGGAGGGCTTGAGCGCGGAGGAGG
GCTTTTGGAACGAGGCAGTGAGCGCCAGAAAGGTGCTTGGAGATATGAAC
AGGTTGAAGGTGCAGGTGGAACGATTAGAGAATTGGCGGAGATGGGAGGC
AGATGCAGAGACCGTTATAGAGCTGTGCGGGGAGGTGGGCGAAGGAGACG
ATGATGCTACCGTCATGTTGGACGAGGCCATGGAGGTTGAAGGTGCAGGT
GGAACGATTAGAGAATTGGCGGAGATGGGAGGCAGATGCAGAGACCGTTA
TAGAGCTGTGCGGGGAGGTGGGCGAAGGAGACGATGATGCTACCGTCATG
TTGGACGAGGCCATGGAGGCCGTGAGACTCCTCCAGAAGGACCTGGACAG
TTGGGAATTAGAGCAGCTGTTATCAGGCAAGTATGACGCCTGTGGGTGCA
GGTTGACGATCAACGCCGGGGCAGGTGGCGTGGACGCGATGGACTGGGCG
CTCATGCTGCAGCGTATGTATCTGCGGTACTTCGAGAGACGCAGATTCAA
ATACACCATCGTCGAGGAGGAGGCCGTGAGACTCCTCCAGAAGGACCTGG
ACAGTTGGGAATTAGAGCAGCTGTTATCAGGCAAGTATGACGCCTGTGGG
TGCAGGTTGACGATCAACGCCGGGGCAGGTGGCGTGGACGCGATGGACTG
GGCGCTCATGCTGCAGCGTATGTATCTGCGGTACTTCGAGAGACGCAGAT
TCAAATACACCATCGTCGAGGAGGAGGCTGGGGAACATGGCATCAAAAGC
TGCGAGATTCAGGTGGAAGGAGAGTTCGCCTACGGCTATCTAGCCGGAGA
GAAGGGGACGCACCGGCTAGTGCGTCAGTCGCCTTTCAACGCGCAGAGCA
AGCGGCAGACGAGCTTTGCCGGGGTGGAGTCGCTGCCCATCATCGAACAG
GAGGACTTGTCGTGAGCTGGGGAACATGGCATCAAAAGCTGCGAGATTCA
GGTGGAAGGAGAGTTCGCCTACGGCTATCTAGCCGGAGAGAAGGGGACGC
ACCGGCTAGTGCGTCAGTCGCCTTTCAACGCGCAGAGCAAGCGGCAGACG
AGCTTTGCCGGGGTGGAGTCGCTGCCCATCATCGAACAGGAGGACTTGTC
GTGA
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