mRNA_H-paniculata_contig11253.803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11253.803.1
Unique NamemRNA_H-paniculata_contig11253.803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11253.803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11253contigH-paniculata_contig11253:4916..5498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size583
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.9208815-UTR-H-paniculata_contig11253:4915..50601622928828.9208815-UTR-H-paniculata_contig11253:4915..5060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11253 4916..5060 +
1691480636.9798584-UTR-H-paniculata_contig11253:4915..50601691480636.9798584-UTR-H-paniculata_contig11253:4915..5060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11253 4916..5060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.933247-CDS-H-paniculata_contig11253:5060..54981622928828.933247-CDS-H-paniculata_contig11253:5060..5498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11253 5061..5498 +
1691480636.9887455-CDS-H-paniculata_contig11253:5060..54981691480636.9887455-CDS-H-paniculata_contig11253:5060..5498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11253 5061..5498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11253.803.1prot_H-paniculata_contig11253.803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11253 5061..5498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11253.803.1

>prot_H-paniculata_contig11253.803.1 ID=prot_H-paniculata_contig11253.803.1|Name=mRNA_H-paniculata_contig11253.803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MYRFVSTLNWRLNPSVCQFLRRNIFFQILTCSTAAVGSLTQRTSCDTAPS
SHGTVSWRKTSAPMINFDRQRGKWRLKLKYTQSTKKTTQVKQSKLFGTEE
EAEATKQWWRTSWEQGYEGTQVDLSPSSDQEQSSASASTAGSAAAR
back to top

mRNA from alignment at H-paniculata_contig11253:4916..5498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11253.803.1 ID=mRNA_H-paniculata_contig11253.803.1|Name=mRNA_H-paniculata_contig11253.803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at H-paniculata_contig11253:4916..5498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAACTTTCTAGCCATAGTATATTTGAAAATAATATGGAAAGTACTCCTGT
AATCGGCAAATCTTAATCTATGAGCAAGCCAGGTGACAGTGCGATGTTGG
CAGGCACTTACAAACAAAACTGTCCTGTCCTTCGACCATCCATAAATGTA
TAGGTTTGTGTCTACATTAAACTGGCGGCTAAACCCGTCAGTTTGTCAAT
TTTTGCGGCGGAATATTTTTTTTCAAATTTTGACCTGCAGCACTGCAGCT
GTTGGGAGCCTTACGCAACGCACAAGCTGCGACACGGCTCCAAGCTCGCA
TGGTACCGTGAGTTGGCGGAAGACCTCTGCCCCGATGATCAATTTCGATC
GGCAGAGGGGGAAGTGGAGGTTGAAACTGAAGTACACGCAAAGTACAAAA
AAGACGACACAGGTGAAGCAATCGAAGCTTTTCGGCACCGAGGAGGAGGC
AGAGGCAACCAAACAGTGGTGGCGGACGAGTTGGGAGCAGGGGTACGAGG
GTACGCAGGTTGACCTTTCCCCTTCTTCAGATCAAGAGCAAAGCTCGGCC
TCCGCGTCAACAGCAGGTTCGGCAGCTGCCAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11253:4916..5498+

>mRNA_H-paniculata_contig11253.803.1 ID=mRNA_H-paniculata_contig11253.803.1|Name=mRNA_H-paniculata_contig11253.803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig11253:4916..5498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATAGGTTTGTGTCTACATTAAACTGGCGGCTAAACCCGTCAGTTTG
TCAATTTTTGCGGCGGAATATTTTTTTTCAAATTTTGACCTGCAGCACTG
CAGCTGTTGGGAGCCTTACGCAACGCACAAGCTGCGACACGGCTCCAAGC
TCGCATGGTACCGTGAGTTGGCGGAAGACCTCTGCCCCGATGATCAATTT
CGATCGGCAGAGGGGGAAGTGGAGGTTGAAACTGAAGTACACGCAAAGTA
CAAAAAAGACGACACAGGTGAAGCAATCGAAGCTTTTCGGCACCGAGGAG
GAGGCAGAGGCAACCAAACAGTGGTGGCGGACGAGTTGGGAGCAGGGGTA
CGAGGGTACGCAGGTTGACCTTTCCCCTTCTTCAGATCAAGAGCAAAGCT
CGGCCTCCGCGTCAACAGCAGGTTCGGCAGCTGCCAGGATGTATAGGTTT
GTGTCTACATTAAACTGGCGGCTAAACCCGTCAGTTTGTCAATTTTTGCG
GCGGAATATTTTTTTTCAAATTTTGACCTGCAGCACTGCAGCTGTTGGGA
GCCTTACGCAACGCACAAGCTGCGACACGGCTCCAAGCTCGCATGGTACC
GTGAGTTGGCGGAAGACCTCTGCCCCGATGATCAATTTCGATCGGCAGAG
GGGGAAGTGGAGGTTGAAACTGAAGTACACGCAAAGTACAAAAAAGACGA
CACAGGTGAAGCAATCGAAGCTTTTCGGCACCGAGGAGGAGGCAGAGGCA
ACCAAACAGTGGTGGCGGACGAGTTGGGAGCAGGGGTACGAGGGTACGCA
GGTTGACCTTTCCCCTTCTTCAGATCAAGAGCAAAGCTCGGCCTCCGCGT
CAACAGCAGGTTCGGCAGCTGCCAGG
back to top