mRNA_H-paniculata_contig11252.802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11252.802.1
Unique NamemRNA_H-paniculata_contig11252.802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.400e-13
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   19 KSGEERLLEAAGAV---FGGEADDDEMEFLMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEESD 228
            K  EE LLEAAG++    GG+ + DEME LM E+RKARE G S+ D++RR+RAA VAMRLAALLGD  D+  +
Sbjct:  433 KESEEYLLEAAGSMVGGIGGDLEGDEMERLMGEVRKARELGGSVSDEERRSRAANVAMRLAALLGDFGDDSGE 505
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 8.420e-13
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   19 KSGEERLLEAAGAV---FGGEADDDEMEFLMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEESD 228
            K  EE LLEAAG++    GG+ + DEME LM E+RKARE G S+ D++RR+RAA VAMRLAALLGD  D   +
Sbjct:  510 KESEEYLLEAAGSMVGGIGGDLEGDEMEQLMGEVRKARELGGSVSDEERRSRAANVAMRLAALLGDLGDHSGE 582
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: A0A833VY35_PHYIN (Alpha and gamma adaptin binding protein p34 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VY35_PHYIN)

HSP 1 Score: 55.5 bits (132), Expect = 2.520e-6
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   34 RLLEAAG-----AVFGGEADDDEMEF-----LMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEESD 228
            + LE AG        G + DDD+++      L+SE+R  R++G SL D+QRR RAAEVAM+L  LLGD+ D + D
Sbjct:  223 QALEIAGDATVRGAAGEKGDDDDIDMAQFSALISEVRNVRDQGESLTDEQRRERAAEVAMKLWNLLGDDSDGDED 297
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: A0A3F2RUT7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUT7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.090e-6
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   67 GEADDDEMEF--LMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEES 225
            G+ D D  EF  L+SE+R  R++G +L D+QRR RAAEVAM+L + LG EDDE+S
Sbjct:  261 GDNDIDMSEFSTLLSEVRNVRDQGQTLTDEQRRERAAEVAMKLWSFLGAEDDEDS 315
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: D0NPH4_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPH4_PHYIT)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-6
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   64 GGEADDDEMEF--LMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEESD 228
            G E D D  +F  L+SE+R  R++G SL D+QRR RAAEVAM+L  LLGD+ D + D
Sbjct:   94 GDEDDIDMAQFSALISEVRNVRDKGESLTDEQRRERAAEVAMKLWNLLGDDSDGDED 150
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: A0A5D6XS64_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS64_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.810e-5
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   70 EADDDEMEF--LMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEESD 228
            EAD D  EF  L+SE+R+ R+ G SL D+QRR RAAEVAM+L   LG +D+ + D
Sbjct:  293 EADVDMAEFSALISEVRRVRDSGQSLTDEQRRQRAAEVAMKLWGFLGADDESDDD 347
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: A0A6A3MUD7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MUD7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.360e-5
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   49 AGAVFGGEADDDEMEF-----LMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDD 216
            AG+   G+ DDD+++      L+SE+R  R++G SL D+QRR RAAEVAM+L   LG++ D
Sbjct:  253 AGSGEAGDGDDDDLDMAEFSALISEVRDVRDQGQSLTDEQRRERAAEVAMKLWNFLGEDGD 313
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: A0A6G0L129_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0L129_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.950e-5
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   49 AGAVFGGEADDDEMEF-----LMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDD 216
            AG+   G+ DDD+++      L+SE+R  R++G SL D+QRR RAAEVAM+L   LG++ D
Sbjct:  970 AGSGEAGDGDDDDLDMAEFSALISEVRDVRDQGQSLTDEQRRERAAEVAMKLWNFLGEDGD 1030
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BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Match: R1CV67_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CV67_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 9.580e-5
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   70 EADDDEMEFLMSEMRKAREEGNSLPDDQRRARAAEVAMRLAALLGDEDDEESD 228
            E DD+++E L  +M + R  G SLPDD+RR RAA +A  +A +L D +DE+ D
Sbjct:  569 ERDDEKLERLFEQMGQIRNSGASLPDDERRERAAALAQEMARMLADGEDEDED 621
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11252.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FHG9_ECTSI4.400e-1358.90IRC6, uncharacterized protein interacting with AP ... [more]
A0A6H5L249_9PHAE8.420e-1358.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A833VY35_PHYIN2.520e-645.33Alpha and gamma adaptin binding protein p34 n=1 Ta... [more]
A0A3F2RUT7_9STRA3.090e-656.36Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0NPH4_PHYIT3.330e-654.39Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A5D6XS64_9STRA1.810e-554.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3MUD7_9STRA2.360e-547.54Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6G0L129_9STRA2.950e-547.54Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
R1CV67_EMIHU9.580e-547.17EF-hand domain-containing protein n=2 Tax=Emiliani... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11252contigH-paniculata_contig11252:6384..7811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size419
Cds size231
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11252.802.1prot_H-paniculata_contig11252.802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11252 6384..7625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.857059-CDS-H-paniculata_contig11252:6383..64701622928828.857059-CDS-H-paniculata_contig11252:6383..6470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11252 6384..6470 +
1691480636.9539526-CDS-H-paniculata_contig11252:6383..64701691480636.9539526-CDS-H-paniculata_contig11252:6383..6470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11252 6384..6470 +
1622928828.868997-CDS-H-paniculata_contig11252:7481..76251622928828.868997-CDS-H-paniculata_contig11252:7481..7625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11252 7482..7625 +
1691480636.9634643-CDS-H-paniculata_contig11252:7481..76251691480636.9634643-CDS-H-paniculata_contig11252:7481..7625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11252 7482..7625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.8822873-UTR-H-paniculata_contig11252:7625..78111622928828.8822873-UTR-H-paniculata_contig11252:7625..7811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11252 7626..7811 +
1691480636.971643-UTR-H-paniculata_contig11252:7625..78111691480636.971643-UTR-H-paniculata_contig11252:7625..7811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11252 7626..7811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11252.802.1

>prot_H-paniculata_contig11252.802.1 ID=prot_H-paniculata_contig11252.802.1|Name=mRNA_H-paniculata_contig11252.802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VVVGVEKSGEERLLEAAGAVFGGEADDDEMEFLMSEMRKAREEGNSLPDD
QRRARAAEVAMRLAALLGDEDDEESD*
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mRNA from alignment at H-paniculata_contig11252:6384..7811+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11252.802.1 ID=mRNA_H-paniculata_contig11252.802.1|Name=mRNA_H-paniculata_contig11252.802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig11252:6384..7811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTCGTGGGGGTGGAAAAATCTGGTGAAGAGAGGTTGCTGGAGGCTGC
AGGGGCTGTGTTTGGCGGCGAGGCCGACGACGATGAGGTAGGTGGTCTCG
TGGCTGCATGCCTGGAGTGCGTTCTGCTCAGATCAGATCTTATGGGTTTC
GAAAATATTTTCGTGTTAAGCTTGATTGTCGACGTTTACCCACTGACAGT
CGTTTCTAGTACAAGTGGATTCATTAGTGTACACTAGTATGTCAAATACA
CAGGTATATTGCCACGCTTGGTGCTGTTTTATGCACTGCCTCTTGTCTTT
TTCAGACGCCTCATGTTCAAGCTGTAGTAGATGCAATACTGCTAGACGTA
TGCACTTGAGCTACGTCAGTGTGCATCTATCTGCCTGTCGTTACATTTGC
GTCTGCACTAAACTTATCTCCTTTTTTAGTGTTGGACTGTTTTTGTTTCA
TTGTGTTTGATTGAGTTACCTTACCCTTGCAGCCTTTTGTCTCCCTTTAA
AAATGCAGGTAGCTGCCCATCCCTCAATGTATTTCAATTTTTTGCCTACC
TCCCGGCTGCTTTCGTTTGGTGATTGTGTGATGTGTTGCGTGTATCTGTA
GCGTTCGTCAAAATTACATCCCAGTACCAACTGCAATGTTTGTATTCTAT
CATTTTTATGCTGTACACGATACCCCCATTACGCCGTCCCCCTCCACCAA
TCTCAATTCCTTCAGAGTGCTCCATCCTCCGGAGGTCACTTGGCCTATGG
TTAATCGTTAAAGCTGCAAAGCACAGCGAGTTACTCCCCCCTCAACTAGT
TGTCTGTAAGTTGCTGATGAGTAAAGATAGCCATGATCCATCCAGGATTG
TGGCTCTCGATATTTGCTGCACTATAAACTGTGGCAAATCAAATCACGAG
ACTATTTGGTTTTTTATAATGTGTTGGTATTGCTTCGTTTGTAATAGGCC
AGCCATACTACTGTAGCACGCCATACACGCGAGTGATACGTACGGTTACA
CTGCTATATTCCTTGGTAGATGCAGTAGTCCGTCTCTTCACATACTGATC
TAAGCCCCCGCCGCCCTCTCCCTCTGCCGGTGACCGTTGCGTGTACAGAT
GGAATTTTTGATGTCCGAGATGCGCAAGGCGAGGGAGGAAGGAAACAGCT
TGCCGGACGACCAGCGCCGTGCGCGAGCGGCCGAGGTCGCTATGAGATTA
GCGGCTCTTTTGGGAGATGAGGATGACGAAGAGTCCGATTGAAAAAAACA
GTTACATCTCGTGTGGCGCGCCATCTGGGGCGATTTCTTATGTGGTTGAC
AGCTTTTTAATTTTTAAACTCACGTATTCAGTACAAACGACTGTCAGCAG
CCGGTCTACCGTGCAATTGTGACCGCCAGGTGATTAATATAATTGGAACT
GAGGTCGATGGGCCCTATCGCACGCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11252:6384..7811+

>mRNA_H-paniculata_contig11252.802.1 ID=mRNA_H-paniculata_contig11252.802.1|Name=mRNA_H-paniculata_contig11252.802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig11252:6384..7811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTCGTGGGGGTGGAAAAATCTGGTGAAGAGAGGTTGCTGGAGGCTGC
AGGGGCTGTGTTTGGCGGCGAGGCCGACGACGATGAGGTGGTCGTGGGGG
TGGAAAAATCTGGTGAAGAGAGGTTGCTGGAGGCTGCAGGGGCTGTGTTT
GGCGGCGAGGCCGACGACGATGAGATGGAATTTTTGATGTCCGAGATGCG
CAAGGCGAGGGAGGAAGGAAACAGCTTGCCGGACGACCAGCGCCGTGCGC
GAGCGGCCGAGGTCGCTATGAGATTAGCGGCTCTTTTGGGAGATGAGGAT
GACGAAGAGTCCGATTGAATGGAATTTTTGATGTCCGAGATGCGCAAGGC
GAGGGAGGAAGGAAACAGCTTGCCGGACGACCAGCGCCGTGCGCGAGCGG
CCGAGGTCGCTATGAGATTAGCGGCTCTTTTGGGAGATGAGGATGACGAA
GAGTCCGATTGA
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