mRNA_H-paniculata_contig29417.8011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29417.8011.1
Unique NamemRNA_H-paniculata_contig29417.8011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: D8LTE6_ECTSI (GSCFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.840e-35
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLMLDDERAFFQSHLLEVATPQRH 309
            RDYRFFE+DMIHP+ VAVDYIW+KL  AMFSD+A+ TM EV KV+   EHRPFNP+S+AHQ FLR+QL ++D L+ ++P L LDDER FFQ+ +LE      H
Sbjct:  258 RDYRFFESDMIHPSGVAVDYIWDKLTGAMFSDDAMRTMQEVQKVVQGTEHRPFNPKSDAHQKFLRKQLLKVDNLERRYPGLKLDDERGFFQAQVLEPVAASAH 360
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: A0A3B1CDX5_9ZZZZ (GSCFA domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1CDX5_9ZZZZ)

HSP 1 Score: 98.6 bits (244), Expect = 3.690e-21
Identity = 43/94 (45.74%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLMLDDERAFFQSHL 282
            RDYRF+++D++HPN +A DYIWEK   +MFS+  +  M E+ K++ A+EHR  N +SE+HQ FL+ QL+++  L  KHP L L ++ ++F+  L
Sbjct:  233 RDYRFYDSDLLHPNKLATDYIWEKFSASMFSENCLTLMKEIAKIIKAREHRVRNVKSESHQAFLKSQLEKIRTLHLKHPHLNLSEDESYFRKQL 326
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: A0A1Y2PA51_9FLAO (GSCFA domain-containing protein n=1 Tax=Tenacibaculum holothuriorum TaxID=1635173 RepID=A0A1Y2PA51_9FLAO)

HSP 1 Score: 96.3 bits (238), Expect = 2.290e-20
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKL 243
            RDYRF+  DMIHPNS A++YIWEK ++  FS+E+  TM EV+ +     HRPFNP SEAHQ FL++  +++ K +  HP +
Sbjct:  234 RDYRFYNEDMIHPNSTAINYIWEKFIQTWFSEESFQTMKEVDTIQKGLTHRPFNPNSEAHQTFLKKLNKKIAKTRSNHPNI 314
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: A0A7S3XMN9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMN9_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 4.030e-20
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLMLDDERAFFQSHLLE 288
            RDYRF+  DM HP+  A++YIW K  +  FS++ +  + +++KV  A +HRPF P +EAHQ FLR+QL  +  L+ +HP L    ER  F S L E
Sbjct:   60 RDYRFYAEDMFHPSDQAIEYIWGKFQQTYFSEDTLRLIEKIDKVQQAMKHRPFRPETEAHQIFLRKQLDTISILEKEHPSLNFTIERRHFDSFLTE 155
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: UPI0015BDB812 (GSCFA domain-containing protein n=1 Tax=Winogradskyella schleiferi TaxID=2686078 RepID=UPI0015BDB812)

HSP 1 Score: 94.0 bits (232), Expect = 1.770e-19
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKL 243
            RDYRF+ ADM+HPN VA+DYIWEK      S+EAI T  +V  +   K HRPFNP S+AHQ+FL +    +D L+ KHP +
Sbjct:  239 RDYRFYNADMLHPNDVAIDYIWEKFKGVWISEEAIKTSGKVASIQARKAHRPFNPTSQAHQDFLTKLQSEIDDLRIKHPHI 319
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: UPI0019C32AB4 (GSCFA domain-containing protein n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019C32AB4)

HSP 1 Score: 94.0 bits (232), Expect = 2.020e-19
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLMLDDERAFF 270
            RDYRF+  DMIHPN +A+DYIW K+ E  F ++    + E+ K+  AK HRP N  S+AHQ FL+ Q+++L+ ++  +P + L DE ++F
Sbjct:  234 RDYRFYSEDMIHPNKIAIDYIWNKISETYFDNQTSKILGEIKKLNQAKNHRPINVNSQAHQAFLKNQIEQLESIKKIYPNIDLSDELSYF 323
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: A0A3M9NAW1_9BACT (GSCFA domain-containing protein n=1 Tax=Hanamia caeni TaxID=2294116 RepID=A0A3M9NAW1_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 7.120e-19
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLMLDDERAFFQSHL 282
            RDYRFF+ D++HPN +A D+++EK  E+ F  E    + E+ KV  A  H+PF   SE HQ F+  Q++ +D+LQ K P + L +ER +FQS L
Sbjct:  233 RDYRFFKKDLVHPNEMATDFVFEKFSESFFDHETKSIINEIEKVTAAANHKPFEKESEKHQQFIFAQIENIDRLQQKFPFVNLSNERQYFQSQL 326
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BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: A0A4Q8RTR9_9BACT (GSCFA domain-containing protein n=1 Tax=Marinilabiliaceae bacterium JC017 TaxID=2234116 RepID=A0A4Q8RTR9_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 7.390e-19
Identity = 38/83 (45.78%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLML 249
            RDYRFF+ DM+HP   A+DY+WE+  +A F+ +A+  + E+N+V+ AKEHRPFNP+SEA++ FL + ++++ K+   +P + L
Sbjct:  234 RDYRFFDEDMLHPGKKAIDYVWERFCKAWFAKDAVSFLQEMNRVIKAKEHRPFNPQSEAYEIFLSQNIEKIHKISKSYPNVDL 316
[Close]
BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: UPI0009BE5DE4 (GSCFA domain-containing protein n=1 Tax=Salegentibacter sediminis TaxID=1930251 RepID=UPI0009BE5DE4)

HSP 1 Score: 92.0 bits (227), Expect = 8.020e-19
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKL 243
            RDYRF+  DM+HP+ VA+DYIW++  E  FS+EA+ T+AEV+ +     HRPFNP SEAH+NFL++     + L  KHP L
Sbjct:  229 RDYRFYAEDMLHPSPVAIDYIWKRFTETWFSEEAMITLAEVDNIQKGLAHRPFNPESEAHRNFLKKLRLLKENLLKKHPYL 309
[Close]
BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Match: A0A350JIW8_9FLAO (GSCFA domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350JIW8_9FLAO)

HSP 1 Score: 91.3 bits (225), Expect = 1.920e-18
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    1 RDYRFFEADMIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEAHQNFLRRQLQRLDKLQGKHPKLMLDDERAFFQSHLL 285
            RDYRF+ ADM+HPN  A+DYIW+K  ++ FSDE      EV  V+ A  HRP +P S + Q F+R+Q+  ++ L+ K+P L L +ER  F+   L
Sbjct:  234 RDYRFYAADMLHPNEQAIDYIWDKFQQSFFSDETRIVCKEVKAVVEAAHHRPMDPESNSFQRFIRKQMDLINGLEAKYPSLDLKEERQRFEGFQL 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29417.8011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE6_ECTSI1.840e-3562.14GSCFA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A3B1CDX5_9ZZZZ3.690e-2145.74GSCFA domain-containing protein n=1 Tax=hydrotherm... [more]
A0A1Y2PA51_9FLAO2.290e-2050.62GSCFA domain-containing protein n=1 Tax=Tenacibacu... [more]
A0A7S3XMN9_HETAK4.030e-2044.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0015BDB8121.770e-1953.09GSCFA domain-containing protein n=1 Tax=Winogradsk... [more]
UPI0019C32AB42.020e-1944.44GSCFA domain-containing protein n=1 Tax=Candidatus... [more]
A0A3M9NAW1_9BACT7.120e-1944.68GSCFA domain-containing protein n=1 Tax=Hanamia ca... [more]
A0A4Q8RTR9_9BACT7.390e-1945.78GSCFA domain-containing protein n=1 Tax=Marinilabi... [more]
UPI0009BE5DE48.020e-1951.85GSCFA domain-containing protein n=1 Tax=Salegentib... [more]
A0A350JIW8_9FLAO1.920e-1845.26GSCFA domain-containing protein n=1 Tax=Flavobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29417contigH-paniculata_contig29417:1002..3019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue4.1e-25
Seed eggNOG ortholog2880.D8LTE6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GSCFA family
EggNOG OGs2EGXU@1,2SMRS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size604
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29417.8011.1prot_H-paniculata_contig29417.8011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29417 1029..2727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.9764135-UTR-H-paniculata_contig29417:1001..10281622929899.9764135-UTR-H-paniculata_contig29417:1001..1028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29417 1002..1028 +
1691481061.1096265-UTR-H-paniculata_contig29417:1001..10281691481061.1096265-UTR-H-paniculata_contig29417:1001..1028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29417 1002..1028 +
1622929900.0308838-UTR-H-paniculata_contig29417:2727..30191622929900.0308838-UTR-H-paniculata_contig29417:2727..3019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29417 2728..3019 +
1691481061.1419892-UTR-H-paniculata_contig29417:2727..30191691481061.1419892-UTR-H-paniculata_contig29417:2727..3019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29417 2728..3019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.997128-CDS-H-paniculata_contig29417:1028..11211622929899.997128-CDS-H-paniculata_contig29417:1028..1121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29417 1029..1121 +
1691481061.125343-CDS-H-paniculata_contig29417:1028..11211691481061.125343-CDS-H-paniculata_contig29417:1028..1121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29417 1029..1121 +
1622929900.0114067-CDS-H-paniculata_contig29417:2535..27271622929900.0114067-CDS-H-paniculata_contig29417:2535..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29417 2536..2727 +
1691481061.13379-CDS-H-paniculata_contig29417:2535..27271691481061.13379-CDS-H-paniculata_contig29417:2535..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29417 2536..2727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29417.8011.1

>prot_H-paniculata_contig29417.8011.1 ID=prot_H-paniculata_contig29417.8011.1|Name=mRNA_H-paniculata_contig29417.8011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MIHPNSVAVDYIWEKLVEAMFSDEAIDTMAEVNKVMLAKEHRPFNPRSEA
HQNFLRRQLQRLDKLQGKHPKLMLDDERAFFQSHLLEVATPQRH*
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mRNA from alignment at H-paniculata_contig29417:1002..3019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29417.8011.1 ID=mRNA_H-paniculata_contig29417.8011.1|Name=mRNA_H-paniculata_contig29417.8011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2018bp|location=Sequence derived from alignment at H-paniculata_contig29417:1002..3019+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGACTACCGGTTCTTCGAAGCAGACATGATTCACCCGAATAGCGTAGC
GGTGGACTACATTTGGGAAAAACTTGTAGAGGCAATGTTCTCCGATGAAG
CTATCGACACCATGGCCGAGGTATGCACATAACATGGAGGTTCTATCCAG
CACTCTCAAGCCTGACAGCGACACATTTCGAAACCTTCACTTGACAGTAA
AATGTCAAAATCTCGGCACGTATAAAATCCCAAAACTCCCAGTGCCTTAA
CACTATTTTCTGACAGCCAAGACTGACATAACCAATTGGCCCAACGCGCG
AGGCTGCGAAGCCTCGCTTTTAAGGGCGTGTACTTAATGACTTAGTTGGC
TACCTGGCCGATAACGCATGTATCCTCTTTCGATATTCACCGTACGCCTT
GTGTTGTGCGTGTATATCTATCTGCCATGGTGTATCGTAGCACCCTTGGT
ATCGTATCACATCCCCTAGTATTATTTTCCAAACCCGATTTTGTCGAGAA
GCAAGAGGCCTGCCTGTACTTATGCTGCCGAAACAGCAATTCTACTTCTT
TGATATCAACGAGATCTTCCCAACGATACCACTGTCGGTGCCATGAGCAC
CATCGTTGTCGTGAGATCGACTTGAAAATAGTATCAGGGGGTGCAGTGCG
ATATCAAGGGGTTTTTGCGGTACTCTAGTATTAATTTCTTTTCATGTCTA
GCGTGTATGTTTATGTAGTGATGCTCGTGGTGGAATTCAGTGGAATTCAG
ATTGGCTGAGTGCGCATCCTCGACCTATAATCTGCTTTGGCCGATGGAGT
AGGCCCCCGGCACACGCTTGGCTAAATCAGGGCAATAATACGTGGCGTAC
TGCCTTGGACTGAGCAGAAATTCAGCGTTGACCAGCATGACGGAGTGAAG
AATTGTCGCGCTTGTTGGTTCTCGATCTCACGAAAGTTAACCCTACAGCT
TGATGTCGGTACCTTTTTTGTCAGTCGTCCCGTCAACCCAGCCAAACACG
AGGCCTTGAGCTAGCTATCTGAACGGTCTACAGTCGCGATTGGTGTCGTC
TTCGGGCCAAAGGAAGTTAGTTAACGCGTGATTTGAGAATTATTATGATG
GGTGTGAGCACACTGCTGGAGTAAGGCGATACATTTTACATTCTCTTTGA
GAAAGCACCATGTGTGTGGCATTTGAGCACGGTGATTTCCAGATAGCTGA
TCATCATGAAGTGCTGGCTCGCATCCAAGCGCATGTGCCGATAGAAAGTG
AAAAAGTTTATTCGCTTTTATGAAACATCCCAGTATCGTTTCAGGGACAA
TATCTTCTTGGTGTAAGGTTGCGTGGCTCTCGCATCTTCAGCAACGGTCG
TTGAAATCCGTGCAGGGTGTCTTCGTAGGGGATGAGTTTTCAGAAAATTC
CTGAATGGACCAGTCGAAAACGTGCTATTTTTGCATTCACTCCTCGTTTC
GAAACGCTTGACGCACCCGCTACTCATTTAATTTTGCTGATACCGGTACC
CCCCACCTCCCCCTCAACCCGCCGTCACTCGCAGGTAAATAAGGTGATGC
TGGCGAAGGAACATAGACCGTTCAATCCACGAAGCGAGGCCCACCAGAAT
TTTCTGAGGAGGCAGTTACAGAGGCTAGACAAGCTACAGGGCAAGCACCC
GAAGCTGATGTTAGATGATGAGCGAGCGTTCTTCCAGTCGCACTTGCTGG
AAGTGGCGACGCCTCAGAGACATTAACTACTCTGCTGCGGTGGAATTATC
AAATGACAGAAGCTTAGTTTTTTGGGGGTTTTTCTGAAGGACCGCGTGTA
CGATACCGGGATACTCACGTACTTCCCATATTGTACGGTGGTGGTAGCGG
CTGTTTGTTCTGTATCTTGGAGGGTGTCACGCCACGGTTTCCGATGTAAC
CCCGTCCTACCTCCTCCATATCCTGCCATTTTTGCACAGGAGCTTTTTTT
GTGTTTTAATCATGGTTGTTGGTATTTTGTACGTCGGTGGAAGTTTTTTT
TTTTTTTTTTAACCCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig29417:1002..3019+

>mRNA_H-paniculata_contig29417.8011.1 ID=mRNA_H-paniculata_contig29417.8011.1|Name=mRNA_H-paniculata_contig29417.8011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig29417:1002..3019+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCACCCGAATAGCGTAGCGGTGGACTACATTTGGGAAAAACTTGT
AGAGGCAATGTTCTCCGATGAAGCTATCGACACCATGGCCGAGATGATTC
ACCCGAATAGCGTAGCGGTGGACTACATTTGGGAAAAACTTGTAGAGGCA
ATGTTCTCCGATGAAGCTATCGACACCATGGCCGAGGTAAATAAGGTGAT
GCTGGCGAAGGAACATAGACCGTTCAATCCACGAAGCGAGGCCCACCAGA
ATTTTCTGAGGAGGCAGTTACAGAGGCTAGACAAGCTACAGGGCAAGCAC
CCGAAGCTGATGTTAGATGATGAGCGAGCGTTCTTCCAGTCGCACTTGCT
GGAAGTGGCGACGCCTCAGAGACATTAAGTAAATAAGGTGATGCTGGCGA
AGGAACATAGACCGTTCAATCCACGAAGCGAGGCCCACCAGAATTTTCTG
AGGAGGCAGTTACAGAGGCTAGACAAGCTACAGGGCAAGCACCCGAAGCT
GATGTTAGATGATGAGCGAGCGTTCTTCCAGTCGCACTTGCTGGAAGTGG
CGACGCCTCAGAGACATTAA
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