mRNA_H-paniculata_contig293.7989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig293.7989.1
Unique NamemRNA_H-paniculata_contig293.7989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig293.7989.1 vs. uniprot
Match: A0A6H5KGW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.570e-9
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   25 KDDLDYDDTFIDDSELEKAFLAKEASQNAKTVHSGFFANQGEVETIDESSDDNSVSRKKGSG 210
            K   DY+D FIDD+ L +A+ AKEAS   KTVH+GFFANQG V T+D  SDD       G+G
Sbjct:  149 KHSFDYEDDFIDDTLLVEAYYAKEASSKVKTVHTGFFANQGAVATVD--SDDGGERSSGGAG 208
[Close]
BLAST of mRNA_H-paniculata_contig293.7989.1 vs. uniprot
Match: D8LBJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 6.180e-9
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   25 KDDLDYDDTFIDDSELEKAFLAKEASQNAKTVHSGFFANQGEVETID 165
            K   DY+D FIDD+ L +A+ AKEAS   KTVH+GFFANQG V T+D
Sbjct:  148 KHSFDYEDDFIDDTLLVEAYYAKEASSKVKTVHTGFFANQGAVATVD 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig293.7989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGW2_9PHAE4.570e-954.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBJ9_ECTSI6.180e-961.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig293contigH-paniculata_contig293:24577..25035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.6620624-CDS-H-paniculata_contig293:24576..247081622929896.6620624-CDS-H-paniculata_contig293:24576..24708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig293 24577..24708 -
1691481059.9261034-CDS-H-paniculata_contig293:24576..247081691481059.9261034-CDS-H-paniculata_contig293:24576..24708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig293 24577..24708 -
1622929896.6795888-CDS-H-paniculata_contig293:24942..250351622929896.6795888-CDS-H-paniculata_contig293:24942..25035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig293 24943..25035 -
1691481059.934965-CDS-H-paniculata_contig293:24942..250351691481059.934965-CDS-H-paniculata_contig293:24942..25035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig293 24943..25035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig293.7989.1prot_H-paniculata_contig293.7989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig293 24577..25035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig293.7989.1

>prot_H-paniculata_contig293.7989.1 ID=prot_H-paniculata_contig293.7989.1|Name=mRNA_H-paniculata_contig293.7989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
VVKRTRKVKDDLDYDDTFIDDSELEKAFLAKEASQNAKTVHSGFFANQGE
VETIDESSDDNSVSRKKGSGGGSAG
back to top

mRNA from alignment at H-paniculata_contig293:24577..25035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig293.7989.1 ID=mRNA_H-paniculata_contig293.7989.1|Name=mRNA_H-paniculata_contig293.7989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=459bp|location=Sequence derived from alignment at H-paniculata_contig293:24577..25035- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGAAGAGGACTCGGAAGGTCAAAGACGATCTTGATTACGATGACAC
CTTCATCGATGATTCGGAGTTGGAAAAGGCCTTCCTTGCTAAGGTACTCC
GCGGCAGTGCGACGGCTGTGTCGCCAGCTTGAGAATTTCGTTTACTCCTT
GGTGTTCTTAGATAGCACCGGGAACTATTCGATCAATCGTGCGACTGTAT
GTACCCACTGCTGCTACGTTATTGTCCATTAATTCAGCGTGTTTTCTTCT
CTCCGAACCCTCTTTTATCTTCCTTTACTGCGGTATCCTCGCTTGTGTTA
TGTTCCTCATGACTCGCTTGAGAACAGGAGGCGTCGCAAAACGCCAAGAC
GGTGCACTCTGGATTTTTCGCCAACCAGGGAGAAGTGGAGACCATCGACG
AGTCATCAGACGATAATAGTGTCAGCAGGAAGAAGGGATCCGGCGGAGGG
AGTGCGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig293:24577..25035-

>mRNA_H-paniculata_contig293.7989.1 ID=mRNA_H-paniculata_contig293.7989.1|Name=mRNA_H-paniculata_contig293.7989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig293:24577..25035- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGAAGAGGACTCGGAAGGTCAAAGACGATCTTGATTACGATGACAC
CTTCATCGATGATTCGGAGTTGGAAAAGGCCTTCCTTGCTAAGGTGGTGA
AGAGGACTCGGAAGGTCAAAGACGATCTTGATTACGATGACACCTTCATC
GATGATTCGGAGTTGGAAAAGGCCTTCCTTGCTAAGGAGGCGTCGCAAAA
CGCCAAGACGGTGCACTCTGGATTTTTCGCCAACCAGGGAGAAGTGGAGA
CCATCGACGAGTCATCAGACGATAATAGTGTCAGCAGGAAGAAGGGATCC
GGCGGAGGGAGTGCGGGCGAGGCGTCGCAAAACGCCAAGACGGTGCACTC
TGGATTTTTCGCCAACCAGGGAGAAGTGGAGACCATCGACGAGTCATCAG
ACGATAATAGTGTCAGCAGGAAGAAGGGATCCGGCGGAGGGAGTGCGGGC
back to top