prot_H-paniculata_contig2929.7986.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2929.7986.1
Unique Nameprot_H-paniculata_contig2929.7986.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length207
Homology
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 5.730e-84
Identity = 159/206 (77.18%), Postives = 167/206 (81.07%), Query Frame = 0
Query:    1 MADEVDFEGDYEEEQAMDDADEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNXXSNGKVAKSGRKSGTKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRG-KGTGQPGRRR 205
            MADEVDFE +YEEEQ MDDAD G         XXXXXXXXXXXXXXXXXX            GK    GRK G KGRGHQ  SM+VEDRYEGRGGVFESVD G +GGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEK+EEA+ AI EMDGSQLL+QDISV+WAFV+G KG GQP RRR
Sbjct:    1 MADEVDFEPEYEEEQPMDDADNGQAGGREGQAXXXXXXXXXXXXXXXXXX----------KGGK----GRKGGAKGRGHQGGSMEVEDRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQAAIDEMDGSQLLDQDISVSWAFVKGGKGAGQPRRRR 192          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.220e-52
Identity = 92/140 (65.71%), Postives = 106/140 (75.71%), Query Frame = 0
Query:   69 GRKSGTKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFV---RGKGTGQPGRRR 205
            G+  G K +G      + E+RY+GRGGVFESVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVKGY LVEFE REEAE AI  ++G +LL Q ISV WAF+    GK  G+ G RR
Sbjct:   35 GKGGGGKQKGRGFKGGNDEERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALVEFESREEAENAIETLNGEELLGQTISVDWAFLDAGSGKKKGRKGGRR 174          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.370e-52
Identity = 87/132 (65.91%), Postives = 99/132 (75.00%), Query Frame = 0
Query:   74 TKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRGKGTGQPGRRR 205
            TKGRGH   +MD EDRY+GRGG+FESV+T    GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVKGY LVE+E  EEA  AI   +G +LL Q ISV WAF+   G   P RRR
Sbjct:   30 TKGRGHTGTAMDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFLSDSGK-HPRRRR 160          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.390e-49
Identity = 84/135 (62.22%), Postives = 101/135 (74.81%), Query Frame = 0
Query:   64 KVAKSGRKSGT---KGRGHQA-LSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVR 194
            K   SGRK  T   KGRGH +    D  DRY GRGGVFE++  G   GP +S+EGWI+FV NVH+EAQEDDI+DKFSEYG VKN+HVNLDRRTGFVKGY LVEFE+ ++A+ AI  +DG +LL+Q I V WAF +
Sbjct:   25 KAGSSGRKVTTVMTKGRGHNSGHDGDDGDRYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALVEFEELKDAQAAIQGLDGKKLLDQVIQVDWAFKK 159          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.470e-46
Identity = 78/128 (60.94%), Postives = 100/128 (78.12%), Query Frame = 0
Query:   66 AKSGRKSGTKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFV 193
            A +G+    KGRGH A +MD E+RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF+++G V+N+ VNLDRRTGFVKGY L+E+ + +EA  A+  M+G ++L Q ISV WAF+
Sbjct:   30 ASTGKSVKRKGRGHVA-AMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVKGYALIEYAEHDEAAKALEAMNGDEILGQTISVDWAFL 155          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A6U2CUA9_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A6U2CUA9_HEMAN)

HSP 1 Score: 154 bits (389), Expect = 4.470e-44
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 0
Query:   64 KVAKSGRKSGTKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRGKGTGQPGRRR 205
            KV  +GRK   +G    A  M+ E+RY GR G FESVD     GP +SVEGWI FV  ++EEA E+D+ DKFS++G +KNL + LDRRTGFVKGY LVE+E R+EA+ AI EM+G++ +EQ ++V WAF +G   G+   RR
Sbjct:   38 KVDSAGRKVKGRGAKDAAAQMEAEERYSGRAGQFESVDNEGGKGPAKSVEGWICFVTGINEEANEEDVYDKFSDFGEIKNLQLPLDRRTGFVKGYALVEYELRKEAQAAIEEMNGAEFMEQTLTVDWAFTKGPFKGRQSTRR 179          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE)

HSP 1 Score: 153 bits (386), Expect = 5.080e-44
Identity = 76/134 (56.72%), Postives = 95/134 (70.90%), Query Frame = 0
Query:   61 SNGKVAKSGRKSGTKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVR 194
            + G +A+  R  G  GRG     M   +RYEG+GGVFES+    SG   +SVEGWI+ VR +HEEAQEDDI D FS YG +KNLH+NLDRRTGFVKGY L+E+E+ +EA+ AI  M+G +LL Q + V WAFVR
Sbjct:   12 NGGGIAEERRIKGRGGRGGGDADMTDVERYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVKGYALIEYEQFDEAQAAIHAMNGKELLSQPVHVDWAFVR 145          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A7S0E2Z3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2Z3_9CRYP)

HSP 1 Score: 152 bits (383), Expect = 1.790e-43
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 0
Query:   64 KVAKSGRKSGTKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRGKGTGQPGRRRR 206
            KV  +GR+   KGRG    S   EDRY G+ G FESVDT    GP +SVEGWI+FV  +HEEA E+DI DKFSEYG +K + + LDRRTGFVKGY LVE+EK+ EA+ AI +M+G++L+EQ ++V WAF +G   G+   RR+
Sbjct:   17 KVDNAGRR--VKGRGTGDGSTR-EDRYAGKSGQFESVDTEGGPGPSKSVEGWIVFVMGIHEEANEEDIYDKFSEYGEIKQMQLPLDRRTGFVKGYALVEYEKKSEAQKAIEQMNGAELMEQTLTVDWAFSKGPIRGRASTRRK 156          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A7S3JPB2_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPB2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 5.240e-43
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 0
Query:   75 KGRGHQALSMDV--EDRYEGRGG-VFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRGKGTGQPGRRRR 206
            KGRGH+    +   E+  EGRGG  FES+D   S GP +SVEGWILFV NVHEEAQEDDI+D F E+G VKN+HVNLDRRTGFVKGY L+EF ++ +AE AI E++G  +  Q I V WAF +   T Q  RRRR
Sbjct:   23 KGRGHRPRRRESFDEECLEGRGGGYFESIDDS-SYGPVKSVEGWILFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRTGFVKGYALIEFAEQAQAEAAITELNGKDMFGQSILVDWAFCKENSTSQYSRRRR 156          
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Match: A0A834LVG0_RHOSS (RRM domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LVG0_RHOSS)

HSP 1 Score: 149 bits (376), Expect = 1.690e-41
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 0
Query:   74 TKGRGHQALSMDVEDRYEGRGGVFESVDTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRG 195
            TKGRG +    D  DR     G F+S+D+    GP+RS+EGWI+ V  VHEEAQEDD+ + F E+G +KNLH+NLDRRTGFVKGY L+E+E R+EA+ AI+EMDG++LL Q+I+V WAF RG
Sbjct:   49 TKGRGFRQ-ETDAADRNTRLAGRFDSLDSDGGPGPERSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENRDEAQKAISEMDGTELLTQNITVDWAFSRG 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2929.7986.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSN1_9PHAE5.730e-8477.18RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2G621_9STRA1.220e-5265.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DBP5_9STRA3.370e-5265.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3GV69_9STRA3.390e-4962.22Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2S198_9STRA3.470e-4660.94Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6U2CUA9_HEMAN4.470e-4452.82Hypothetical protein n=3 Tax=Hemiselmis TaxID=7792... [more]
A0A0G4H5U6_9ALVE5.080e-4456.72RRM domain-containing protein n=1 Tax=Chromera vel... [more]
A0A7S0E2Z3_9CRYP1.790e-4355.24Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3JPB2_9STRA5.240e-4359.26Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A834LVG0_RHOSS1.690e-4158.20RRM domain-containing protein n=1 Tax=Rhododendron... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 17..37
NoneNo IPR availablePANTHERPTHR45894FAMILY NOT NAMEDcoord: 25..197
IPR008111RNA-binding motif protein 8PRINTSPR01738RNABINDINGM8coord: 68..80
score: 30.77
coord: 162..178
score: 36.47
coord: 106..120
score: 84.67
coord: 180..192
score: 50.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 116..189
e-value: 4.3E-18
score: 76.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 117..184
e-value: 5.3E-17
score: 61.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 115..193
score: 15.374
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 108..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2929contigH-paniculata_contig2929:8826..12899 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2929.7986.1mRNA_H-paniculata_contig2929.7986.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2929 5397..13032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2929.7986.1 ID=prot_H-paniculata_contig2929.7986.1|Name=mRNA_H-paniculata_contig2929.7986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MADEVDFEGDYEEEQAMDDADEGAEEQEEQEGQEEEDDENAEAGGGREGG
GQGAAAANGGSNGKVAKSGRKSGTKGRGHQALSMDVEDRYEGRGGVFESV
DTGPSGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDR
RTGFVKGYCLVEFEKREEAELAIAEMDGSQLLEQDISVTWAFVRGKGTGQ
PGRRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008111RNA-bd_8
IPR000504RRM_dom
IPR035979RBD_domain_sf