mRNA_H-paniculata_contig1125.799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1125.799.1
Unique NamemRNA_H-paniculata_contig1125.799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: D7FK15_ECTSI (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK15_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.690e-45
Identity = 104/236 (44.07%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  331 MVILKGFLSVQEQSELAANVHRLGGEQLGGFYSCHNEKTKRMRMMNLGLRTDGGKHSQEIPRGWVDTAVRACRLAAGMDSSIPVLRPDICVVNHYTASSRLGWHQDLVSSRDPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFD--------VPEAGRYNLNFREL 1014
            MVILK FLS  EQ ELAA+V RLG  Q GGFYSCHNEKTKRMRMMNLGL+TDG KH   IP  W + A+R                                                                        GQ A FQYR+SWKK+A VKSV LESGDALIFGGRSRGIIH +PR+ TAV +P P        T      G +        VP  GR+NLNFREL
Sbjct:    1 MVILKSFLSGDEQEELAAHVGRLGALQHGGFYSCHNEKTKRMRMMNLGLKTDGNKHVLPIPPAWTEVALR------------------------------------------------------------------------GQPATFQYRISWKKSAQVKSVRLESGDALIFGGRSRGIIHGVPRIDTAV-APPPXXXXXXXATRSSAAEGAEGRGAGPCVVPGGGRFNLNFREL 163          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A7S2SHR7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHR7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.340e-44
Identity = 94/197 (47.72%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  316 MLRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFYSCHNEKTKRMRMMNLGLRTDGGKHSQEIPRGWVDTAVRACRLAAGMDSSIPVLR-PDICVVNHYTASSRLGWHQDLVSSRDPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAV 903
            +L KG+V L G +  ++Q  L     +LG    GGFY C+NEKTKRM MMNLG R DG  H Q IP  ++  A  A R A+ +DSSIPVL  PD+CVVN YT +SRLG H+D VS   PGLPVVS+SL                    G  A F YR  W K   VK +TL SGD L+FGG+SR ++H +PR+ ++V
Sbjct:   17 VLPKGVVHLAGHVEPEQQMALIRLAQQLGACAKGGFYWCNNEKTKRMMMMNLGRRPDGKCHPQGIPPEFLAVAREASRSASAVDSSIPVLDDPDVCVVNKYTPASRLGMHEDQVSKGLPGLPVVSISL--------------------GLSAEFCYRRGWGKRYPVKKITLRSGDVLVFGGKSRSLLHAVPRIHSSV 193          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A835YUH1_9STRA (Alpha-ketoglutarate-dependent dioxygenase AlkB-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 5.430e-39
Identity = 96/239 (40.17%), Postives = 131/239 (54.81%), Query Frame = 1
Query:  316 MLRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFYSCHNEKTKRMRMMNLGLRTDGGKHSQ---EIPRGWVDTAVRACRLAAGMDSSIPV--LRP-DICVVNHYTASSRLGWHQDLVSSRDPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFREL 1014
            ML++GMV++K FL+  +Q +L   V  LG     GF+ C NEKT+ MRMM+LG R+    H      IP  W   A  A   AA  D+S+    LRP ++CVVNHYT+ S+LGWHQD+++ RD  +PVVSLSL                    G  A F ++ S+ K A  +SV LESGDAL+FGG+SRG++H +    T +  P+  +       A           AGR+N+N REL
Sbjct:   38 MLQRGMVLIKAFLNETQQEQLIGEVLSLGQT---GFFQCDNEKTRHMRMMHLG-RSTAPPHKLLPLSIPLSWQQLAEDAVTAAAAADTSLSNKHLRPANVCVVNHYTSCSKLGWHQDMMTKRDCSIPVVSLSL--------------------GDSATFHFKNSYSKKATERSVVLESGDALVFGGQSRGVVHSV----TDIKPPQQPISWQRGSAA----------LAGRFNVNLREL 238          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: R0G514_9BRAS (Fe2OG dioxygenase domain-containing protein n=4 Tax=Capsella rubella TaxID=81985 RepID=R0G514_9BRAS)

HSP 1 Score: 103 bits (256), Expect = 5.930e-20
Identity = 84/260 (32.31%), Postives = 124/260 (47.69%), Query Frame = 1
Query:  316 MLRKGMVILKGFLSVQEQSELAANVHRLG-GEQLGGFYS--CHNEKTKRMRMMNLGLRTD------------GGKHSQEIPRGW---VDTAVRACRLAAGMDSS-------IPVLRPDICVVNHYTASSRLGWHQDLVSSR---DPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            ++R GMV+LK +LS+ +Q  +     +LG GE  GGFY     +E    ++MM LG   D             G +  +IP  +   V+ A++  +  A  +S+       IP + PDIC+VN YT++ RLG H+D   S      GLPVVS S+                    G  A F Y   W ++AA +++ LESGD L+FGG+SR ++H +  +     +  P VL    +    LRPG       R NL FR+
Sbjct:  214 VIRPGMVLLKNYLSIDDQVMIVNKCRQLGLGE--GGFYQPGYRDEAKMHLKMMCLGKNWDPETSRYGEVRPIDGSNPPKIPAEFYQFVEKAIKESQSLAASNSNEKRGEVIIPFMSPDICIVNFYTSTGRLGLHRDKDESERSIQKGLPVVSFSI--------------------GDSAEFLYGDQWDEDAA-ETLVLESGDVLLFGGKSRNVLHGVRSI---TKNTAPNVL----VQETSLRPG-------RLNLTFRQ 436          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A5N5N665_9ROSI (Fe2OG dioxygenase domain-containing protein n=3 Tax=Salix TaxID=40685 RepID=A0A5N5N665_9ROSI)

HSP 1 Score: 102 bits (254), Expect = 7.800e-20
Identity = 90/260 (34.62%), Postives = 116/260 (44.62%), Query Frame = 1
Query:  313 RMLRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFY--SCHNEKTKRMRMMNLGLRTDGGKHSQE------------IPRGW---VDTAVRACRLAAGMDSSI-------PVLRPDICVVNHYTASSRLGWHQDLVSSRDP---GLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            R+LR GMV+LK ++SV +Q EL      +G    GGFY     N    R++MM LGL  D      E            IPR +   V+TA++      G D ++       P + PDIC+VN YT + +LG HQD   S +    GLPVVS S+                    G  A F Y      N A K + LESGD LIFGG SR I H +  V   +    P  L    +   +LRPG       R NL FR+
Sbjct:  181 RVLRPGMVLLKRYISVSDQIELVKTCREIGLGP-GGFYRPGYKNGAKLRLQMMCLGLNWDPETRKYEDQDPTDGCKPPYIPREFNQIVETAIQDAHAVLGKDLALSNVEEILPAMSPDICIVNFYTTTGKLGLHQDRDESSESLSKGLPVVSFSV--------------------GDSAEFLYGDQRDVNKADK-IVLESGDVLIFGGSSRHIFHGVTSV---IPHSSPKAL----IEETRLRPG-------RLNLTFRQ 404          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A6M2EQ88_9ROSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2EQ88_9ROSI)

HSP 1 Score: 100 bits (249), Expect = 9.590e-20
Identity = 91/259 (35.14%), Postives = 116/259 (44.79%), Query Frame = 1
Query:  316 MLRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFY--SCHNEKTKRMRMMNLGLRTDGGKHSQE------------IPRGW---VDTAVRACRLAAGMDSSI-------PVLRPDICVVNHYTASSRLGWHQDLVSSR---DPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            +LR GMV+LK ++S+  Q E+      +G    GGFY     N    R++MM LGL  D      E            IPR +   V+TA++      G D ++       P + PDIC+VN YT + RLG HQD   S    D GLPVVS S+                    G  A F Y      N A K V LESGD LIFGG+SR I H     G   V P+     + + T  +LRPG       R NL FR+
Sbjct:   87 VLRPGMVLLKRYISLGYQIEMVKTCREIGRGP-GGFYRPGYKNGAKLRLQMMCLGLNWDPETRKYEDQSPADGCKPPCIPRKFNQLVETAIQDAHGLLGKDCALSNVEDMLPAMSPDICIVNFYTTTGRLGLHQDRDESSESLDKGLPVVSFSV--------------------GDSAEFLYGDQRDVNKADK-VVLESGDVLIFGGKSRHIFH-----GVTSVIPDSAPKALIEET--RLRPG-------RLNLTFRQ 309          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A1S2YL53_CICAR (uncharacterized protein LOC101502779 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YL53_CICAR)

HSP 1 Score: 100 bits (248), Expect = 1.000e-19
Identity = 87/260 (33.46%), Postives = 119/260 (45.77%), Query Frame = 1
Query:  301 TNSSRMLRKGMVILKGFLSVQEQSELAANVHRLG-GEQLGGFYS-CHNEKTK-RMRMMNLGLRTD------------GGKHSQEIPRGWVD---TAVRACRLAAGMDSS--IPVLRPDICVVNHYTASSRLGWHQDLVSSRDP---GLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            T    +LR GMV+LKG++S+++Q ++   +  LG G+  GGFY   ++E  + +++MM LG   D             G    EIP  +VD   +AV          +S  IP + PDIC+VN Y  + +LG HQD   S +    GLPVVS S+                    G  A F Y       A  K V LESGD LIFGG+SR + H     G A + P       P L   +     D+   GR NL FR+
Sbjct:   71 TKERTVLRPGMVLLKGYISIRDQIKIVKVIRELGLGD--GGFYQPSYDEGAELQLKMMCLGKNWDPQTSRYLDQRPCDGSSPPEIPSEFVDLVNSAVHESNSITKPSNSKPIPSISPDICIVNFYAKNGKLGLHQDKDESEESIRKGLPVVSFSI--------------------GDSAEFLYGDE-SNVAKAKKVVLESGDVLIFGGKSRKVFH-----GVASIDPN----SAPSLLVEET----DLRRPGRLNLTFRQ 294          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A5C7HQ14_9ROSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HQ14_9ROSI)

HSP 1 Score: 97.8 bits (242), Expect = 4.990e-19
Identity = 86/264 (32.58%), Postives = 117/264 (44.32%), Query Frame = 1
Query:  301 TNSSRMLRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFYS--CHNEKTKRMRMMNLGLRTD------------GGKHSQEIPRGWVDTAVRACR----------LAAGMDSSIPVLRPDICVVNHYTASSRLGWHQDLVS---SRDPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            T  S +LR GMV+LK +++V++Q ++      LG +  GGFY     +    R++MM LGL  D             G     IP  ++    RA R          +A  ++  +P + PDIC+VN Y  S RLG HQD      S   GLPVVS S+                    G  A F Y        A K + LESGD LIFGG SR + H + R+   + +  P +L    +   +LRPG       R NL FRE
Sbjct:   54 TGRSSVLRPGMVVLKRYINVRDQIQIVKTCQELG-KGPGGFYQPGYKSGAKLRLKMMCLGLNWDPETKEYEELRSFDGCEPPAIPYKFLRLVRRAIRDAHSLIEKDLIANNVEEILPAMSPDICIVNFYNTSGRLGLHQDCDETEYSLRKGLPVVSFSV--------------------GDSAEFLYSDERDAENAEK-IVLESGDVLIFGGESRLVFHGVSRI---IPNSAPMLL----MERTRLRPG-------RLNLTFRE 281          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: D8TX83_VOLCA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TX83_VOLCA)

HSP 1 Score: 96.7 bits (239), Expect = 6.760e-19
Identity = 87/254 (34.25%), Postives = 108/254 (42.52%), Query Frame = 1
Query:  319 LRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFYSCHNEKTKRM--RMMNLGLRTDGGKHSQEIPRGWVDTA---------VRACRLAAGMDSS---------IPVLRPDICVVNHYTASSRLGWHQD---LVSSRDPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            L  G+++LKG+L++ EQ  +   +  LG    GGFY+       R+  RMM +GL  +      E  R   D A         V  C    G  S+         +P LRPDIC+ N Y  S RLG HQD   +  S   GLPVVSLSL                    G  A F Y  + +   A  SV LESGD L+FGG  R I H + RV        P       L A  LRPG       R NL FR+
Sbjct:   25 LPPGVILLKGYLTMDEQIRIVLQIRELGVGP-GGFYTPSYNTGARLSLRMMCMGLHWEPRTSKYEATRSSYDGATPPPIPSWLVELCGRCLGAASAAAAAAGGIQLPPLRPDICLANFYERSGRLGMHQDKDEMPDSLRAGLPVVSLSL--------------------GDAADFLYGRTREAEQA-SSVRLESGDVLVFGGPGRMIFHSVSRV-------HPHTAPRELLAATGLRPG-------RLNLTFRQ 242          
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Match: A0A8B8PVH3_9MYRT (uncharacterized protein LOC115746933 isoform X1 n=5 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8PVH3_9MYRT)

HSP 1 Score: 100 bits (249), Expect = 6.790e-19
Identity = 86/267 (32.21%), Postives = 123/267 (46.07%), Query Frame = 1
Query:  292 QASTNSSRMLRKGMVILKGFLSVQEQSELAANVHRLGGEQLGGFYS-CHNEKTK-RMRMMNLGLRTD------------GGKHSQEIPRGWVDTAVRACRLA----------AGMDSSIPVLRPDICVVNHYTASSRLGWHQDLVSSRDP---GLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQYRVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLGVPDLTAGQLRPGFDVPEAGRYNLNFRE 1011
            Q     SR+LR GMV+LK +++++EQ ++      +G    GGFY  C+ +  K R++MM LGL  D             G  + +IP  ++    RA   A          + + + +P + P+IC+VN YT + RLG HQD   SR+    GLPVVS S+                    G  A F +R  ++     + V LESGD +IFGG SR + H I  V   V +  P  L    +    LRPG       R NL FR+
Sbjct:  256 QLVEQESRVLRPGMVLLKNYVTLREQIDIIRKCREIGIGP-GGFYQPCYQDGAKLRLQMMCLGLDWDPNTRKYERQRRVDGCSAPDIPNEFILAVKRAIGDAKDLVKKGDRRSNLRNDLPTMSPNICIVNFYTTTGRLGLHQDRDESRESLRKGLPVVSFSI--------------------GDSAEFLFR-DYRDADGAERVMLESGDVVIFGGESRMVFHGISSV---VPNSAPKAL----VDKSGLRPG-------RLNLTFRQ 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1125.799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK15_ECTSI2.690e-4544.072OG-FeII_Oxy_2 domain-containing protein n=1 Tax=E... [more]
A0A7S2SHR7_9STRA4.340e-4447.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YUH1_9STRA5.430e-3940.17Alpha-ketoglutarate-dependent dioxygenase AlkB-lik... [more]
R0G514_9BRAS5.930e-2032.31Fe2OG dioxygenase domain-containing protein n=4 Ta... [more]
A0A5N5N665_9ROSI7.800e-2034.62Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
A0A6M2EQ88_9ROSI9.590e-2035.14Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A1S2YL53_CICAR1.000e-1933.46uncharacterized protein LOC101502779 n=1 Tax=Cicer... [more]
A0A5C7HQ14_9ROSI4.990e-1932.58Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
D8TX83_VOLCA6.760e-1934.25Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8B8PVH3_9MYRT6.790e-1932.21uncharacterized protein LOC115746933 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1125contigH-paniculata_contig1125:8731..12300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue5.8e-19
Seed eggNOG ortholog81985.XP_006297704.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2OG-Fe(II) oxygenase superfamily
EggNOG OGs37IW5@33090,3GBEH@35493,3HUK9@3699,COG3145@1,KOG2731@2759
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-18_002820.1
COG Functional cat.A
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons6
Model size1615
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1125.799.1prot_H-paniculata_contig1125.799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1125 9329..12120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.561147-UTR-H-paniculata_contig1125:8730..93281622928828.561147-UTR-H-paniculata_contig1125:8730..9328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1125 8731..9328 -
1691480636.8050368-UTR-H-paniculata_contig1125:8730..93281691480636.8050368-UTR-H-paniculata_contig1125:8730..9328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1125 8731..9328 -
1622928828.6459236-UTR-H-paniculata_contig1125:12120..123001622928828.6459236-UTR-H-paniculata_contig1125:12120..12300Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1125 12121..12300 -
1691480636.873337-UTR-H-paniculata_contig1125:12120..123001691480636.873337-UTR-H-paniculata_contig1125:12120..12300Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1125 12121..12300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.5721695-CDS-H-paniculata_contig1125:9328..95891622928828.5721695-CDS-H-paniculata_contig1125:9328..9589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 9329..9589 -
1691480636.815331-CDS-H-paniculata_contig1125:9328..95891691480636.815331-CDS-H-paniculata_contig1125:9328..9589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 9329..9589 -
1622928828.5870495-CDS-H-paniculata_contig1125:10237..103471622928828.5870495-CDS-H-paniculata_contig1125:10237..10347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 10238..10347 -
1691480636.8239214-CDS-H-paniculata_contig1125:10237..103471691480636.8239214-CDS-H-paniculata_contig1125:10237..10347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 10238..10347 -
1622928828.599224-CDS-H-paniculata_contig1125:10651..107571622928828.599224-CDS-H-paniculata_contig1125:10651..10757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 10652..10757 -
1691480636.8327794-CDS-H-paniculata_contig1125:10651..107571691480636.8327794-CDS-H-paniculata_contig1125:10651..10757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 10652..10757 -
1622928828.6123905-CDS-H-paniculata_contig1125:11184..112621622928828.6123905-CDS-H-paniculata_contig1125:11184..11262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 11185..11262 -
1691480636.841885-CDS-H-paniculata_contig1125:11184..112621691480636.841885-CDS-H-paniculata_contig1125:11184..11262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 11185..11262 -
1622928828.6238217-CDS-H-paniculata_contig1125:11608..116891622928828.6238217-CDS-H-paniculata_contig1125:11608..11689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 11609..11689 -
1691480636.851244-CDS-H-paniculata_contig1125:11608..116891691480636.851244-CDS-H-paniculata_contig1125:11608..11689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 11609..11689 -
1622928828.6353638-CDS-H-paniculata_contig1125:11919..121201622928828.6353638-CDS-H-paniculata_contig1125:11919..12120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 11920..12120 -
1691480636.8602657-CDS-H-paniculata_contig1125:11919..121201691480636.8602657-CDS-H-paniculata_contig1125:11919..12120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 11920..12120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1125.799.1

>prot_H-paniculata_contig1125.799.1 ID=prot_H-paniculata_contig1125.799.1|Name=mRNA_H-paniculata_contig1125.799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MTDVSRKRSRPNNSSASDLNTKFAQDKVNAATAAEDGQASTNSSRMLRKG
MVILKGFLSVQEQSELAANVHRLGGEQLGGFYSCHNEKTKRMRMMNLGLR
TDGGKHSQEIPRGWVDTAVRACRLAAGMDSSIPVLRPDICVVNHYTASSR
LGWHQDLVSSRDPGLPVVSLSLVRKKLPTTTRHNVHGSGGLDGQQAIFQY
RVSWKKNAAVKSVTLESGDALIFGGRSRGIIHRIPRVGTAVVSPEPGVLG
VPDLTAGQLRPGFDVPEAGRYNLNFREL*
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mRNA from alignment at H-paniculata_contig1125:8731..12300-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1125.799.1 ID=mRNA_H-paniculata_contig1125.799.1|Name=mRNA_H-paniculata_contig1125.799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3570bp|location=Sequence derived from alignment at H-paniculata_contig1125:8731..12300- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAGATAGGCAGGAAATATCCAGGTGAGCAAGTTCTCGGTTTTTCTAGA TGAATGTGTAAATAAATAAAATTCCACTATACTTTCCTTTATACTCACCC ATAATCCCATCCCCATTGCTTGCTGTATCGCTGTCTTCCCAGATACCAGG GTATAAAGTACACCTCTAAATAGAGCTAGCATGACTGACGTCTCGCGGAA ACGAAGCCGACCCAACAACAGCAGCGCCAGTGATTTGAATACTAAGTTTG CTCAGGATAAAGTCAACGCAGCAACCGCTGCAGAGGACGGACAGGCATCG ACGAATTCGTCGCGAATGTTGCGGAAGGGGATGGTGATTCTAAAGGGATT CCTGTCGGTACAGGAGCAGTCAGAGCTAGCGGCAAGTACGGTCATGAATG ACTCCGAGAATGCTATTATACTTGTACACTAGACCTCAACTAGGGCAAAC ACCTATTTTATTATGCGGGAAGTTTGTACCCAGTATGACGGTGGATGGGA CTTGAGGATTGGACCTCTTCATGCACCGCTGGTAAGTTCTATGCAAAAGC TCACCTTAACTTGAAAGCTGTTACAAAGGGTCACCAACAGTTTTGCCCGC GCTACCTTCAGGCTAATGTTCATCGGCTGGGCGGAGAGCAGCTGGGCGGA TTCTACTCCTGCCATAACGAAAAGACCAAGCGAATGAGGATGGTGAGGCT CACAATGCCGTCCAATCCTCAACCTACGGCAGCCCTTCCAAGTCGCCAAA TCGTGCAGCTATTCATGTTTCATTTTACTTATGGATTTAGCACAACTTTC CGATAGTTTAGCACTCGTTTGCGTAGAGTCCATTGGCCAAGGCAATGTTA CATCGCCACTGACCATTCTGGCCGTTTATCAGTCACTTGCTGAACAAGGA TGGATCAAGGTCATGGGAGAGTATTTACTATTTGATCAGCGGCGTCTCGA CCAGATAGAGTATTCAAAACAGTACCCTTCTATAGGAGAAAACTTTGTTC ACTTCCTAATCAACGTGTTTCACTTTTGATTCAATCAGATGAATCTGGGC TTAAGGACAGACGGAGGGAAGCATTCCCAGGAAATACCCCGGGGATGGGT AGATACCGCCGTAAGGGTAAGCTGCTACACCTTACTGCGCTGCTTGCTGT GCCTACTCCACTTTGCGAACATGCTCACGAAATAGCGGTCTCCTCTTTGT ACAGGTATATTTCTAGGGAGCGATGAGCACGCACGTCGTTGTGGCCTGGT GCCCCTGCCCTACCGTGGTAGTGCAGCTCTAGTACGCGAGATTAAAACGA ACCTGGCATACAATTTCAGATCGCTTAACTCTGGATTTTCATATAGAAAA ATCTGACAATGGAAAGGATCAGCAACCCCAAGTGAACCTACTTAGAGCCA CCATAAAATCCCGAAACCCAAAATGTGCTATCTTATGCTCCTTGCGTCAT TTTTGTCATGGCAATGTCACGCATGCGTCAACAGGAGTAGTTTCGCCACG CATTTTTTCGTGTGTTGCTGCATTTACTGTCTGGTCTCAATAGGCGTGTC GCCTAGCTGCAGGCATGGATTCTTCTATACCTGTTCTTCGCCCGGATATT TGCGTGGTCAATCATTACACTGCTTCATCCCGATTAGGATGGCACCAAGG TACGGACTCTGCTTCAACTGACGTTGACTGGGAAATCGTATGCTTGACGT TTCCTTTTGAGGTATTTATTAATAGGTGACTCGCAAATCGACACGAATTA ATTGCAAAAATACGTCGATATCCGACAGTATTCAAGTTGACCAGAAATAT GTGCAGTGCTCTGAATGGTATCGAGTCATAGTCTCCGCTGCTACTAATCC ACTGTGCACCACGCACCAATGTTCGCTAGACATCGCGTTCCGCCATTCCT GTCGCTACCTTCTGTGACCACATTGCCCTTTGTTGTGTGTGTTCCCACGG CAGACCTGGTCAGCTCTCGAGATCCAGGGCTTCCCGTGGTGTCTCTGTCT CTGGTGAGGAAGAAATTGCCGACAACGACTCGACATAATGTTCACGGCTC GGGTGGCCTTGATGTACGTGCGGCGTTTCAGCTGATCCGAAATTTTCGGG GATAATGCTACTCATCGTCGATACCATCATCCCCCCCCCCCTGCGTGCAA ATGGTCGCTGCTTTGGATGCAGTAGGCCGATGGAATGATGGAGAACATGA TGCATGCATTGTGCTTGAAGAAAAAGAAATAGACTGACGAGCGCGTGACC CATGCGTAAATTCGGTCAGTCATTGCCGTCGGTCGTTTGAGCTGAGCACG TTCGCATGTATACCTTGGGCATTTCATTTGCCAAATCACATCGTGTGTAA GTCGTACCTTCGTTTAAATTTCCCTCAGAAACGTTCTCCTCCGCCACTCT GTTCAATTTGATCTGGTTTGGTTATAGGTAACCGATCACATTGAAAGGTG AACTTCCTCTATCTCCTTTGATAATCGGTTACCTCTCGACAAGGATCGTC TTTGTCCGTGCATGTTCAACACAGTAGTGATACATGGAATCTTCGCCCAT GTGCTCATATTCAAGTTTCTGAGCGACCGCTGTAGTGGTGACCAATGCCC GCGTCTATAGGGACGAATACTCTTACGCGGCAATTGCGTAGAGCTCTTTT TATTTCTACTCTCTATCCTTGCCCGTATCTCCGCCTTGCCTCCATTCCGC ATTTGATACAGGGACAACAGGCGATATTCCAGTACCGCGTCTCCTGGAAA AAAAATGCCGCAGTCAAGTCTGTGACACTTGAAAGCGGAGATGCACTAAT ATTTGGTGGTAGATCCCGGGGAATCATTCACCGTATCCCGAGGGTTGGCA CTGCCGTTGTCAGTCCTGAACCCGGCGTGTTGGGTGTACCAGATCTGACA GCGGGGCAACTTCGACCTGGTTTCGACGTACCGGAGGCGGGACGATACAA CCTGAACTTCAGGGAGCTGTAGATGATTTTGGCAACTGATAGTACAGTTA GTGTAACACGACAACACTTTTTTGTGGCCTGCTTGATATGTCCATGTATT CGCTTGTCGCCGTGGAAGCTTCGACCGTATTGGCGATTGCGTTTCTGCCA AGGATGTCGCGGCCGCGTGTGTGTTCAGATAGGATATGGAGATTCATGAT GAACACGTTCGGTTCGTTTCCACACTTGTCTGTGTTGAGGGTGGCTCCTC GCTCAAGTATCGACAGCATCGTTCGGAGTACCGTGGCGCGAAGTAGTTTG TGTCTCGCGCGTAGATTGTTCAAGACCGGAATTTGCCATCTTGAAAATGG GATGCGCGGGAGCAGAATACATTTATCAGTAGTCACTTAGAGAATCTATT GGCTCCCAGCAGGTTAAAAGTGCTGCACGAAGGCACGAAGGGTAGGGGGG CTGTACACATGTCAATTCCACCCGACTGTATATAACTAGTCCATTATTTC TGTACGACGTAAATTGCCGAACATAACACACGTATGTGCGGAAGAGGTGC ACTGCTGTATACATTCATATGGGGAACAGCTTTTTTACACAAGAAATATA ATGGAATATAAGGCTACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1125:8731..12300-

>mRNA_H-paniculata_contig1125.799.1 ID=mRNA_H-paniculata_contig1125.799.1|Name=mRNA_H-paniculata_contig1125.799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig1125:8731..12300- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGACGTCTCGCGGAAACGAAGCCGACCCAACAACAGCAGCGCCAG
TGATTTGAATACTAAGTTTGCTCAGGATAAAGTCAACGCAGCAACCGCTG
CAGAGGACGGACAGGCATCGACGAATTCGTCGCGAATGTTGCGGAAGGGG
ATGGTGATTCTAAAGGGATTCCTGTCGGTACAGGAGCAGTCAGAGCTAGC
GATGACTGACGTCTCGCGGAAACGAAGCCGACCCAACAACAGCAGCGCCA
GTGATTTGAATACTAAGTTTGCTCAGGATAAAGTCAACGCAGCAACCGCT
GCAGAGGACGGACAGGCATCGACGAATTCGTCGCGAATGTTGCGGAAGGG
GATGGTGATTCTAAAGGGATTCCTGTCGGTACAGGAGCAGTCAGAGCTAG
CGGCTAATGTTCATCGGCTGGGCGGAGAGCAGCTGGGCGGATTCTACTCC
TGCCATAACGAAAAGACCAAGCGAATGAGGATGGCTAATGTTCATCGGCT
GGGCGGAGAGCAGCTGGGCGGATTCTACTCCTGCCATAACGAAAAGACCA
AGCGAATGAGGATGATGAATCTGGGCTTAAGGACAGACGGAGGGAAGCAT
TCCCAGGAAATACCCCGGGGATGGGTAGATACCGCCGTAAGGATGAATCT
GGGCTTAAGGACAGACGGAGGGAAGCATTCCCAGGAAATACCCCGGGGAT
GGGTAGATACCGCCGTAAGGGCGTGTCGCCTAGCTGCAGGCATGGATTCT
TCTATACCTGTTCTTCGCCCGGATATTTGCGTGGTCAATCATTACACTGC
TTCATCCCGATTAGGATGGCACCAAGGCGTGTCGCCTAGCTGCAGGCATG
GATTCTTCTATACCTGTTCTTCGCCCGGATATTTGCGTGGTCAATCATTA
CACTGCTTCATCCCGATTAGGATGGCACCAAGACCTGGTCAGCTCTCGAG
ATCCAGGGCTTCCCGTGGTGTCTCTGTCTCTGGTGAGGAAGAAATTGCCG
ACAACGACTCGACATAATGTTCACGGCTCGGGTGGCCTTGATACCTGGTC
AGCTCTCGAGATCCAGGGCTTCCCGTGGTGTCTCTGTCTCTGGTGAGGAA
GAAATTGCCGACAACGACTCGACATAATGTTCACGGCTCGGGTGGCCTTG
ATGGACAACAGGCGATATTCCAGTACCGCGTCTCCTGGAAAAAAAATGCC
GCAGTCAAGTCTGTGACACTTGAAAGCGGAGATGCACTAATATTTGGTGG
TAGATCCCGGGGAATCATTCACCGTATCCCGAGGGTTGGCACTGCCGTTG
TCAGTCCTGAACCCGGCGTGTTGGGTGTACCAGATCTGACAGCGGGGCAA
CTTCGACCTGGTTTCGACGTACCGGAGGCGGGACGATACAACCTGAACTT
CAGGGAGCTGTAGGGACAACAGGCGATATTCCAGTACCGCGTCTCCTGGA
AAAAAAATGCCGCAGTCAAGTCTGTGACACTTGAAAGCGGAGATGCACTA
ATATTTGGTGGTAGATCCCGGGGAATCATTCACCGTATCCCGAGGGTTGG
CACTGCCGTTGTCAGTCCTGAACCCGGCGTGTTGGGTGTACCAGATCTGA
CAGCGGGGCAACTTCGACCTGGTTTCGACGTACCGGAGGCGGGACGATAC
AACCTGAACTTCAGGGAGCTGTAG
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