mRNA_H-paniculata_contig11240.794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11240.794.1
Unique NamemRNA_H-paniculata_contig11240.794.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 573 bits (1477), Expect = 3.020e-182
Identity = 304/422 (72.04%), Postives = 337/422 (79.86%), Query Frame = 3
Query:  177 LSINSSFKSLVADASAEETKAREIAXXXXXXXXXXXXXXXXXXQEVEALKSAQEAESDDTSDLSD---IRPSIAPPRGSRRDLMKKIPSQSVRNLLATVNTPDTSVSPARERVDDGNRMENLAQTGPQVGGNC-GMGQRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANNPTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDGSGVVFIRLADGRGWVPVRKRKGSLHIT 1430
            L+  SSFK+L+A+ S +ET A+E +   XXXXXXXXXXXXXXX   E+ KS+ +  S   SD  D     PS AP RG R  ++KK  SQSV+NLL TV TPDTSVSP R+   D + +   A  GP  GG   G G RAF + F+EAM+GGCVEGHLMKQSKYFSRWKPRYFRLEDG+LTYYDKKSLVGT+KNKGM LTAHSITSYTNTKNCFCVRT E VWFLL KDE ++NKWMTAINAQIHGLFIK YNVPEDNYWSQG  GRFFYRMVDD+LPQWIRTYPE AAPRTGDGLFPGEVIEV Q L+N++  FLRI NDRGWTYA NP D S LFEEI GEV  D R+YGFP SAKDP+P+LFGPGLESQQTGEALIPGE A A+ERFTP DGSGVVFI+L DGRGWVPVRKR GS  +T
Sbjct:  998 LTAFSSFKNLIAETSKKETAAKEASDAKXXXXXXXXXXXXXXXXXXESTKSSMKNLSLSASDADDHLAALPSAAPGRGQRGRMLKKQASQSVKNLLDTVGTPDTSVSPNRKMKSDEDNVSGPAVVGPGPGGMMFGGGARAFKEMFEEAMKGGCVEGHLMKQSKYFSRWKPRYFRLEDGYLTYYDKKSLVGTNKNKGMELTAHSITSYTNTKNCFCVRTGEAVWFLLGKDELALNKWMTAINAQIHGLFIKLYNVPEDNYWSQGTNGRFFYRMVDDALPQWIRTYPEQAAPRTGDGLFPGEVIEVAQTLTNKETEFLRIGNDRGWTYAKNPADGSTLFEEIDGEVVPDTRNYGFPPSAKDPIPLLFGPGLESQQTGEALIPGERAEAMERFTPGDGSGVVFIKLKDGRGWVPVRKRNGSFGVT 1419          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 7.040e-117
Identity = 208/357 (58.26%), Postives = 248/357 (69.47%), Query Frame = 3
Query:  345 SDDTSDLSDIRPSIAPPRGSRRDLMKKIPSQSVRNLLATVNTPDTSVSPARERVDDGNRMENLAQTGPQVGGNCGMGQRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANNPTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDGSGVVFIRLADGRGWVPVRKRKG 1415
            S+D  +  D+ PS AP RG R   M+K PSQSVR+LL  V  PD SVSP +++     +M N       +GG+    Q++F   FKEAMEGG  EGHLMKQ    + WK RYFRLED  LT+YD KSLVGT KNK M L   S  SYTN  NCF VRT E  W LL+KDE SM KW+TAINA IHGLFIK++NVPEDNY SQGLKG+FFYRMV +  PQWIR++PE  APRTG+GLFPGEV+E+ QVLSN + V+LRIANDRGWT A NP D SVLFEE +G+  ED   Y    ++K+ VPILFGP +ESQ TG+AL PG+ A A  RF P D  G+ FI+LA  +GWVP+    G
Sbjct: 1110 SEDYDESGDLPPSRAPARGQRGSFMQKQPSQSVRDLLGKVGAPDMSVSPRQDK-----KMTNYNDI-TAIGGHSEDKQQSFESRFKEAMEGGVTEGHLMKQVL-STMWKSRYFRLEDDILTFYDTKSLVGTRKNKRMELQPDSTASYTNVPNCFSVRTGEENWILLAKDEDSMEKWITAINAVIHGLFIKRHNVPEDNYDSQGLKGQFFYRMVPNVQPQWIRSFPEEEAPRTGEGLFPGEVVEIVQVLSNNNKVYLRIANDRGWTVAANPEDGSVLFEESNGDFTEDPMDYC---TSKNEVPILFGPSMESQMTGDALAPGQIAEATGRFVPADEGGLAFIKLAGDKGWVPMNPSFG 1456          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 6.400e-92
Identity = 162/346 (46.82%), Postives = 225/346 (65.03%), Query Frame = 3
Query:  411 DLMKKIP---------SQSVRNLLAT--VNTPDTSVSPARERVDDGNRMENLAQTGPQVGGNCGMGQRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLS-NRDLVFLRIANDRGWTYANNPTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDG-SGVVFIRLADGRGWVPVRKR 1409
            DL+ K P         + SV++LL +  + TP+ S  P +   +D    + ++    ++G     G+  F   F+EAMEGG +EGHLMKQ ++ +RW+  YF+L+DGFLT+YDKKSLVGT K K + L  HS T++TNTK CFCVRT +  WFL+++D   M +WMTAINAQ++ LF+K +  P DNYW QG KGRFFY M ++   QWI T+PE  APRTG+G+FP EV+EV Q+L    D ++LR+A++RGWT   +  D     E+++G++ ED R Y  P + +    +L GP   S+ TGE L PG+   AVE+FTP    SGVVFI+LA+GRGWVP+  R
Sbjct: 1125 DLVSKAPQTRGLSRRRTASVKDLLGSQMIRTPEPSPPPKQSSENDATSSKMVST---RLGPKSAAGRNHFETVFQEAMEGGMMEGHLMKQKRFTARWQTYYFKLDDGFLTHYDKKSLVGTRKRKTLELKPHSTTAFTNTKCCFCVRTGQNAWFLIAQDHDQMTQWMTAINAQVYSLFLKNFTPPADNYWGQGTKGRFFYGMPENGASQWIYTHPEEGAPRTGEGVFPMEVVEVVQLLPVGEDHLWLRLADERGWTCGRHSKDGEPCLEQVAGDIVEDTRVYELPRNQEQGTHVLCGPATASEVTGEVLDPGDRVQAVEKFTPAGADSGVVFIKLAEGRGWVPLNIR 1467          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 1.460e-86
Identity = 177/349 (50.72%), Postives = 222/349 (63.61%), Query Frame = 3
Query:  177 LSINSSFKSLVADASA-EETKAREIAXXXXXXXXXXXXXXXXXXQEVEALKSAQEAESDDTSDLSDIRPSIAPPRGSRRDLMKKIPSQSVRNLLATVNTPDTSVSPARERVDD-GNRMENLAQTGPQVGGNCGMG-------------QRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDL--VFLRIANDRGWTYANNPTDDSVL 1172
            L+  S+FK+ + ++SA EET ARE                                E DD S+L+    S AP   SR  LM+K+PS+SV++LL T +TP  SVSP  E  DD    ++NLA   P      G G             + AF   FKEA   G +EG+LMKQSK+ SRWK ++FRL+DGFLT YDKKSLVGT  NK M LT HS  S+  TKNCFCVRT++  WFL+++D  SMN+WMTAINA+IH LF+K Y+VPEDNYWSQGL+GRFFYRM   + PQWI TYPE AAPRTGDGLF G+VI+V QVL++++   VFLRIA+DRGW    +P D++VL
Sbjct: 1019 LAAFSAFKTTLRESSAAEETAARETVPNKPCKTGGN--------------------EDDDMSNLT----SEAPKPDSRGRLMQKMPSRSVQDLLDTTDTPTMSVSPKPEPKDDVDGSLKNLAVAKPGTSRAIGRGGSTISASTSSISSRLAFETKFKEAAIAGRMEGYLMKQSKHSSRWKSQFFRLDDGFLTCYDKKSLVGTTPNKEMELTGHSTASFATTKNCFCVRTEDAAWFLMARDLGSMNEWMTAINAEIHRLFVKLYDVPEDNYWSQGLQGRFFYRMAAGARPQWILTYPEQAAPRTGDGLFEGDVIDVVQVLTHKETGKVFLRIADDRGWAQRRDPVDNTVL 1343          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.330e-82
Identity = 176/384 (45.83%), Postives = 228/384 (59.38%), Query Frame = 3
Query:  333 QEAESDDTSDLSDIRPSIAPPRGSRRDLMKKIPSQSVRNLLAT--VNTP--------DTSVSPARERVDDGNRMENLAQTGPQVGGNCGMGQRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANN--PTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDG----SGVVFIRLADGRGWVPVRKRKGSLHITVH 1436
            Q  E D  S+L  I PS AP    R   + ++PS SV+NLL +  V +P        D SVS      D G  +E +   GP++GG      R+  + F+EAME G  EG+LM QSK   RW PRYF L++GFL++Y+K SLVGT K+K M L A S+T  TN  N F VRT    W LL++ +  M  WM AI  QIH LFI++YNVP D+Y SQG  G+ FY+M     PQWIRT+P   AP TGDGLF GE+IEVTQVL N  + FLR+ANDRGW  A +    D + LF ++SGE+  + R +  P  A  P  +LFGP LESQ+TG  L+PG+S   V+R+T   G     G  F++L    GWVP+ K  G + +  H
Sbjct: 1032 QHQEEDKVSELVVI-PSAAP-ANRRLSAISRVPSLSVKNLLDSDAVKSPVPSXXXXXDVSVS------DFGAGVEMI--DGPRLGG-MPTHMRSTSERFEEAMEDGYKEGYLMSQSKMMKRWTPRYFVLDNGFLSHYEKISLVGTKKHKTMELKADSVTRPTNQINTFGVRTGTTEWLLLARSKKEMKAWMGAITDQIHALFIREYNVPGDDYQSQGTWGQCFYKMAAGVRPQWIRTFPVPQAPHTGDGLFEGEIIEVTQVLENEGVKFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHNVPMIANQPAVVLFGPSLESQETGATLMPGDSVRVVQRYTSAPGVEKRDGQAFVKLKKTGGWVPIMKSNGVVGVVPH 1404          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: A0A6H5JKN0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN0_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 2.820e-81
Identity = 162/365 (44.38%), Postives = 213/365 (58.36%), Query Frame = 3
Query:  372 IRPSIAPPRGSRRDLMKKIPSQSVRNLLAT----VNTPDTSVSPARERVDDGNRMENLAQTGPQVGGNCGMGQRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANN--PTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDG----SGVVFIRLADGRGWVPVRKRKGSLHITVH 1436
            + PS AP    R   + ++PS SV+NLL +       P  + SP       G  +E +   GP+ GG   +  R+  +  +EAM  G  EG+LM QSK   RW PRYF L++GFL++Y+  SLVGT K+K M L A S+T   N  N F VRT    W LL++ +  M  WM AI  QIH LFI++YNVP D+Y SQG  G+ FY+MV    PQWIRT+P   AP TGDGLF GE IEVTQVL N  + FLR+ANDRGW  A +    D + LF ++SGE+  + R +  P  A  P  +LFGP LESQ+ G  L+PG+    V+R+TP  G     G  F++L    GWVP+ K  G + +  H
Sbjct:  420 VIPSAAP-ANRRLSAISRVPSMSVKNLLDSDAVKSPVPSPTASPDISVSGLGAGVEMI--DGPRAGG-MPIHMRSTSERVEEAMADGYKEGYLMSQSKMMKRWTPRYFVLDNGFLSHYENISLVGTKKHKTMELKADSVTRPANQINTFGVRTGTTEWLLLARSKNEMKAWMGAIKDQIHALFIREYNVPGDDYQSQGAWGQCFYKMVAGVRPQWIRTFPVPQAPHTGDGLFEGETIEVTQVLENEGVSFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHIVPMIANQPAVVLFGPSLESQEMGATLMPGDIVRVVQRYTPAPGVEKRDGQTFVKLKKTGGWVPIMKSNGVVGVVPH 780          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: D7FJU8_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU8_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.960e-79
Identity = 148/285 (51.93%), Postives = 191/285 (67.02%), Query Frame = 3
Query:  603 EAMEGGCVEGHLM----------KQSKYFSRWKPRYFRLEDGFLTYYD--KKSLVGTHKNKG--MNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANNPTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDGSGVVFIRLADGRGWVPVRKRKG 1415
            +A E G VE  +M          K ++    W   YFRL++  LT     + S  G    +   M LT+ +ITSYTNTKNCFCVRTD++ WFLL++    M +WMTAIN +   +F +++ V  D+Y  QG +GRFFYRMV+ S+PQWI T+P   APRTGDGLFPGEV+EVTQVLS+ D+ FLR+ANDRGWT+A +P D SVLFE+++G VAED   Y FP  A   VPIL GPGL +Q TG  + PGE   A ERFTP+D S VVF++L DGRGW+P++ + G
Sbjct: 1051 DAKEIGIVELKVMNLNTSEDKREKPTRRAPTWNQYYFRLKEETLTKSPPRRSSFPGNANQQAEDMKLTSATITSYTNTKNCFCVRTDDVSWFLLARSLDDMKRWMTAINLRARHIFQREHGV-HDDYMGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLSSEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLRTQATGVMVRPGERVRASERFTPLDNSSVVFVKLQDGRGWMPLKSQHG 1334          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: A0A6H5LIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIB2_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.790e-78
Identity = 149/289 (51.56%), Postives = 192/289 (66.44%), Query Frame = 3
Query:  603 EAMEGGCVEGHLM----------KQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKG--------MNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANNPTDDSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDGSGVVFIRLADGRGWVPVRKRKG 1415
            +A E G VE  +M          K ++   +W   +FRL +  LT    KSL     + G        M LT+ +ITSYTNTKNCFCVRTDE+ WFLL++    M +WM+AIN +   +F +++ V  D+Y  QG +GRFFYRMV+ S+PQWI T+P   APRTGDGLFPGEV+EVTQVLS+ D+ FLR+ANDRGWT+A +P D SVLFE+++G VAED   Y FP  A   VPIL GPGL++Q TG  + PGE   A ERFTP+D S VVF++L DGRGW+P++   G
Sbjct: 2306 DAKEIGIVELKVMNLNTSEDKREKPTRRAPKWNQYFFRLREETLT----KSLPRRPSSPGNADQQSEDMKLTSATITSYTNTKNCFCVRTDEVSWFLLARSLDDMKRWMSAINLRARHIFQREHGV-HDDYAGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLSSEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLKTQATGVFVRPGERVRASERFTPLDNSKVVFVKLQDGRGWMPLKSEHG 2589          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: A0A836C8E2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA)

HSP 1 Score: 264 bits (674), Expect = 8.170e-70
Identity = 137/328 (41.77%), Postives = 193/328 (58.84%), Query Frame = 3
Query:  576 QRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQ-------------------YNVPEDNYW-SQGLKGRF-FYRMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRD-LVFLRIANDRGWTYANNPTD-----------------------------DSVLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESAAAVERFTPMDGSGVVFIRLADGRGWVPVRK 1406
            + ++   F  A+    VEG L K++K   RWK R+F LE+  L YYDKK+L+G+ K K + +T+ S+TS TN K+CFCV+T + +WFLL+KD+A  +KWMTA+NA I+ L++++                   Y  P+DNYW ++G      F+R ++ S PQW+R +PE  APRTGDG+ PGEV+EV Q +  R   VFLR+A++RGW    +P D                              + LFE++ G+   D + YGF D    PVPI  GPGL+S+ TG++L PG    A  RF P D SG++FI+LADGRGWVPVR+
Sbjct: 1365 RESYKTKFVAALRADKVEGSLKKKTKVLDRWKARWFVLENTALEYYDKKALLGSDKKKTLPITSTSVTSATNLKDCFCVKTGDELWFLLAKDDAEKDKWMTAVNALIYALYVQRIAXXXXXXXXXXXXXXXXSYRPPQDNYWEAEGATNMHGFFRAIEASTPQWVRAFPELDAPRTGDGVVPGEVVEVEQAIEKRSGAVFLRLADERGWVLLRSPHDMFXXXXXXXXXXXXXXXXGGCVXXXXXXRSTALFEQLRGDATVDNKLYGFLDPKMQPVPIYAGPGLKSKPTGDSLTPGCKVQAAMRFLPYDLSGMMFIKLADGRGWVPVRR 1692          
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Match: A0A6S8A7R9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8A7R9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.820e-33
Identity = 104/293 (35.49%), Postives = 148/293 (50.51%), Query Frame = 3
Query:  627 EGHLMKQSKYFSRWKPRYFRLEDGFLTYYDKKSLV---GTHKNKG-------MNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMNKWMTAINAQIHGLFIKQYN------VPEDNYWSQGLKGRFFY---RMVDDSLPQWIRTYPENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANNPTDDSVLFEEISGEVAEDVRSYGFPDSAKD-------PVPILFGPGLESQQTGEALIPGESAAAVERFT----PMDG----SGVVFIRLADGRGWVPVR 1403
            EG+LMKQ K+ SRWKPR+F LED +L Y++KK      G  K +G       M L A SITS+T+T+NCFCV T  + WFL++ +E  M +W++ INA I  L     N      +   ++ S G     F+   R+  D     +RT+    AP TG  L PG+V+E+T+ L  +   ++R+A D GW    +P      F  + G  A    S      AK        PVP+L GP    Q  GE+ I GE    + ++T    P  G    +   F +L+DGRGW P++
Sbjct: 1217 EGYLMKQGKWTSRWKPRWFVLEDSYLEYFEKKQHAYGRGGDKKQGKSKAEKLMRLEAKSITSFTDTENCFCVSTGSVSWFLVAPNEREMAEWISHINAHILSLRNDISNTDTGTDIARASFGSGGSSSSDFFEYARIAPDLDFVQVRTHASPGAPLTGQRLRPGDVVEITRKLELQGSTYVRLA-DFGWAPWLDPDASRPCFIPLEGGNASVPESLDPGKPAKFRLFKGTLPVPLLRGPTHYGQAHGESAIQGEIFEFIAQYTHAATPEPGFERDAYATFFKLSDGRGWAPLK 1508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11240.794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FPQ0_ECTSI3.020e-18272.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMS5_ECTSI7.040e-11758.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Q7_ECTSI6.400e-9246.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ0_ECTSI1.460e-8650.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMW4_ECTSI1.330e-8245.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKN0_9PHAE2.820e-8144.38PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FJU8_ECTSI1.960e-7951.93PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5LIB2_9PHAE3.790e-7851.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8E2_9STRA8.170e-7041.77P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6S8A7R9_9STRA6.820e-3335.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11240contigH-paniculata_contig11240:2..5803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score546.2
Seed ortholog evalue1.1e-152
Seed eggNOG ortholog2880.D7FPQ0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size2706
Cds size1029
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11240.794.1prot_H-paniculata_contig11240.794.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11240 1263..4953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.8082373-UTR-H-paniculata_contig11240:1..12621622928827.8082373-UTR-H-paniculata_contig11240:1..1262Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11240 2..1262 -
1691480636.4464438-UTR-H-paniculata_contig11240:1..12621691480636.4464438-UTR-H-paniculata_contig11240:1..1262Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11240 2..1262 -
1622928827.9834824-UTR-H-paniculata_contig11240:4953..50341622928827.9834824-UTR-H-paniculata_contig11240:4953..5034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11240 4954..5034 -
1691480636.5606906-UTR-H-paniculata_contig11240:4953..50341691480636.5606906-UTR-H-paniculata_contig11240:4953..5034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11240 4954..5034 -
1622928827.9973164-UTR-H-paniculata_contig11240:5468..58031622928827.9973164-UTR-H-paniculata_contig11240:5468..5803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11240 5469..5803 -
1691480636.5733712-UTR-H-paniculata_contig11240:5468..58031691480636.5733712-UTR-H-paniculata_contig11240:5468..5803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11240 5469..5803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.8302774-CDS-H-paniculata_contig11240:1262..14211622928827.8302774-CDS-H-paniculata_contig11240:1262..1421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 1263..1421 -
1691480636.4579208-CDS-H-paniculata_contig11240:1262..14211691480636.4579208-CDS-H-paniculata_contig11240:1262..1421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 1263..1421 -
1622928827.8539748-CDS-H-paniculata_contig11240:1649..17281622928827.8539748-CDS-H-paniculata_contig11240:1649..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 1650..1728 -
1691480636.4677093-CDS-H-paniculata_contig11240:1649..17281691480636.4677093-CDS-H-paniculata_contig11240:1649..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 1650..1728 -
1622928827.870878-CDS-H-paniculata_contig11240:2128..22531622928827.870878-CDS-H-paniculata_contig11240:2128..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 2129..2253 -
1691480636.478758-CDS-H-paniculata_contig11240:2128..22531691480636.478758-CDS-H-paniculata_contig11240:2128..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 2129..2253 -
1622928827.8851213-CDS-H-paniculata_contig11240:2496..26261622928827.8851213-CDS-H-paniculata_contig11240:2496..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 2497..2626 -
1691480636.4903812-CDS-H-paniculata_contig11240:2496..26261691480636.4903812-CDS-H-paniculata_contig11240:2496..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 2497..2626 -
1622928827.8993897-CDS-H-paniculata_contig11240:3042..31701622928827.8993897-CDS-H-paniculata_contig11240:3042..3170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 3043..3170 -
1691480636.501799-CDS-H-paniculata_contig11240:3042..31701691480636.501799-CDS-H-paniculata_contig11240:3042..3170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 3043..3170 -
1622928827.917617-CDS-H-paniculata_contig11240:3550..36251622928827.917617-CDS-H-paniculata_contig11240:3550..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 3551..3625 -
1691480636.5110958-CDS-H-paniculata_contig11240:3550..36251691480636.5110958-CDS-H-paniculata_contig11240:3550..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 3551..3625 -
1622928827.939075-CDS-H-paniculata_contig11240:3846..39661622928827.939075-CDS-H-paniculata_contig11240:3846..3966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 3847..3966 -
1691480636.5200977-CDS-H-paniculata_contig11240:3846..39661691480636.5200977-CDS-H-paniculata_contig11240:3846..3966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 3847..3966 -
1622928827.9534905-CDS-H-paniculata_contig11240:4452..46001622928827.9534905-CDS-H-paniculata_contig11240:4452..4600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 4453..4600 -
1691480636.537333-CDS-H-paniculata_contig11240:4452..46001691480636.537333-CDS-H-paniculata_contig11240:4452..4600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 4453..4600 -
1622928827.9671915-CDS-H-paniculata_contig11240:4888..49531622928827.9671915-CDS-H-paniculata_contig11240:4888..4953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 4889..4953 -
1691480636.5519776-CDS-H-paniculata_contig11240:4888..49531691480636.5519776-CDS-H-paniculata_contig11240:4888..4953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11240 4889..4953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11240.794.1

>prot_H-paniculata_contig11240.794.1 ID=prot_H-paniculata_contig11240.794.1|Name=mRNA_H-paniculata_contig11240.794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MKKIPSQSVRNLLATVNTPDTSVSPARERVDDGNRMENLAQTGPQVGGNC
GMGQRAFHDTFKEAMEGGCVEGHLMKQSKYFSRWKPRYFRLEDGFLTYYD
KKSLVGTHKNKGMNLTAHSITSYTNTKNCFCVRTDEMVWFLLSKDEASMN
KWMTAINAQIHGLFIKQYNVPEDNYWSQGLKGRFFYRMVDDSLPQWIRTY
PENAAPRTGDGLFPGEVIEVTQVLSNRDLVFLRIANDRGWTYANNPTDDS
VLFEEISGEVAEDVRSYGFPDSAKDPVPILFGPGLESQQTGEALIPGESA
AAVERFTPMDGSGVVFIRLADGRGWVPVRKRKGSLHITVHAA*
back to top

mRNA from alignment at H-paniculata_contig11240:2..5803-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11240.794.1 ID=mRNA_H-paniculata_contig11240.794.1|Name=mRNA_H-paniculata_contig11240.794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5802bp|location=Sequence derived from alignment at H-paniculata_contig11240:2..5803- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCCCCGTCGCTCAAAGGCTTTACCATAAGAAGCATTCGGAGAGACA GTTTCTCTCTGTTGTAAATTCATTCTCTTGAGGCAGCTACTTGGAGCCAG CCCCCCTCTGTGCCTAGGCTGATTTATCTATTTCGCTGGTCTATGCTAGT AGCGGGTTTGATTTCTTTCTCTCTGATTGTCTATCAACAGTTCATTCAAG TCACTGGTGGCAGACGCAAGCGCCGAGGAGACGAAAGCAAGAGAGATCGC AGATGCCCAGGCCAAGGAGGCCGCGGATAGGAAAGCGGCTGAAGAGAAGG CCAGGCAGGAGGTCGAAGCTCTCAAGTCAGCGCAGGTAATGTACAGTTTA CCTTTTATGGTGAAAGGGGACGCCTATTTAGAGTAACGTGTGCCCCGTAT AGTGAGGGACCAAAAAGTTGTATGATAACCGGACCCTTTCGTGTGTGTGT GTGTGTGTCGGCTGTATCCGGTAGAATGGTTCAGTGAAACCTATCGAGAT GTGCGAAAAGGAGGTGGTGTTTTAGAAGGGAAAAATGAGAAGTTTTGCTC AACTTGAGCCATTCATCTAGATTTTGTAACAGCAATTTGTTAATGTTTAA ACACGATGTTTCCTTGGTGTTCCTTGTCTAAACAAGTCTATGTATCTTTT TGAGCAGCCGCTTCACGTTGTTGAGTGTCATAGAGGACACGTGGGTGGAT GCTGTCCTCTCTGGACCAGCATCAACTGAGTTGTTGCTGCGCTGTGGCCC GCTCCTGTGTTGAAAGCAGGAGGCGGAGTCCGACGACACGTCTGACCTGT CCGATATTAGACCATCGATCGCGCCGCCACGGGGAAGCCGGAGAGATTTG ATGAAGAAAATTCCGTCGCAATCGGTCAGGAATTTGCTCGCCACTGTCAA CACGCCAGATACCAGGTGTGGTGGATCTGGAGCAAGGTTGGGAGGGAGGG GAAGGGTCGCCAGATGTCACGTTACATATGGTTCGCCTAATCCGTATTTC CCACATAGCATCCATGTAACTTGAATTTCAGTCGCTCTGAGGTCTCTACA ACAATCATAACACCAAGTGTGATAATGTGGATACCGTGGATAGCTGGAAG TCGAACCCGAAAACACATTTGGTACCGTGGGCTCCTTGTTATAACGACCC CTTTTGACTCAATCAAGTGTATGTCTACCGTTCTCTCGTATGCATACCGG TAGCGTGTCGCCTGCCCGTGAAAGAGTAGATGACGGTAATCGCATGGAGA ACTTGGCCCAGACCGGCCCGCAGGTGGGCGGTAACTGTGGCATGGGCCAG CGGGCGTTCCACGACACGTTCAAGGAGGCCATGGAGGGAGGTTGTGTTGA GGTGGGTGATTTATTTTGATCTGGCCGACGCAGCCGTTAGAGGGTCACAG GATGGGCATCCGTAGACATCCAAGGTTCGATTTAGAGTTTGCGTTTGTTT CTGTGAAAGAAGAGTACGCCATCTTGGTCGAAAGTGCCGCATCGTCTGGC TGTTGTTTTTTGTATCACGTTTTTGTTGGCTTAAAAAGACCTGTATGTAC GTCCGCGCTAAATACGCTTGAGTGGGATTGTGTTGATCGTCACCCTAAAA CGTCTCGAATCATGTATAGCTCGTCCGTTGTTCCACCTTGTAAAAGGGCC GAATTGTATTACAGTTGACTGCCAGATGACATTGTAGTAATTCTCCAAGT AGGCCGTGCTTACGAGCAGCAGGATTCGATGTGAAGAATGTGGCAAAGCT GTGTGCGTTCTGGGTACAGTATCAGCAGCTTCGCCCCGTAGATGCCTCAT TTCAGTGAGTTGCTCGTGTGTTGTCCGCGTCGAACAGGGTCACTTGATGA AGCAAAGCAAATATTTCTCGCGATGGAAACCACGCTACTTCCGCCTGGAG GACGGTTTCCTCACGTACTACGACAAGAAGTCCCTCGTTGGTACTCACAA GAACAAGGTAAGATTAACGATAGACCCCCTTGCAATTTGCCACATCCGCT CTTGGTGCAAGGTTTGATGTTGCCACGGCCTATTCTGGTCGCGTGGGGAG CCACGCCTCGCAGTAGGGCTAGTGTGCCCACCGTATATGTTCGAATTTGG TTGCTTGTTAGCAGTCATATTTCCAAGTTCATTCTGACCCGAAAATGCCG CTCTTGTTCGTTTCCGTTTCGTTGACAGGGTATGAATCTCACGGCCCATT CCATCACGTCTTACACGAACACCAAAAACTGCTTCTGTGTACGCACAGAT GAGGTAAGATCATCTCCCCTCTGTCCATAATGTGGAGTCGGCCGAAGCTT AGCTCAGCGAGCACGCAACTCGAACTTAACATTCGAAGTCGTTGTCTTCG AGGGCATACTTTCAGGTCCGTGCACAATATTCAGCGGCATTTGCCATCGA GTGATTCAGTTCTCGTTGCGAGTGAAGGAGGGATGTCAGCGACGCAACCC ACTGGTCCCGAGGATGCAACATTCATCAATGGTCGGCTATCTGTGTTCTA TGCTGGAGGTATCCTTGGACTGCGTTCAATGCGGGTACATTGAGATTTTT ATGTTCGCAGTAAAACTGTGCTGTTCGAACCAACTCCAGCAGTTATTGTC GGGCTTTGGTGCTCCGTTCCACCTGGCTCACAGATGGTCTGGTTCCTGCT GTCGAAGGATGAGGCAAGCATGAACAAGTGGATGACGGCGATCAACGCGC AGATCCACGGGTTGTTTATTAAGCAGTACAATGTACCAGAGGATAACTAC TGGAGCCAGGGGTGAGTACGTAATAAGCACGACTATGTTACATGGTAGCA CCCAGTCAGCACCAAAATGCTTTGACCGTGATGTGCCTCCTCGTTCAGAC TTGTTCGTCCGCCGCTCGCGCTCAACATGGCGATTCTCTTCTGTTTATAC CCTTTTTTCGCGACTGAAACCGGTTGTGTCGAGCCCAGCGGCGTCCAGTG CTGCCGCCTCTAGTTCGTAAACTCGCCGCAGGTTTTTCAAGGTGGATTTT AGTTTATATTATGACATACCGCTCAGCCGGCGGGATACCCATGTGTTGGA TGAGTACAAGTGTACACCTCACTGTTTCATTGCTCACTATCGGGATATAT CATTACGCAGTATTCTTAAAAGGAATGATACACCGTTCAGTGTTGTATGT CATTGTTAACTTACGAAAACAACACAGGCTTAAGGGGCGCTTCTTCTACC GCATGGTGGACGACTCACTGCCGCAATGGATTCGGACATACCCGGAAAAC GCCGCCCCGCGTACAGGCGATGGCTTATTCCCGGGGGAGGTAATAGAGGT CACCCAGGTGTGTGATATTGCAGCTTTTTGTCGGTACTCGATCGCGCGAC ACGCACGTATACGGGGCATGCTTTTCCCGAAAACTCGTGTTTTTTCTTGG GTTACGCTGCAGAGATAAGTGGGCAGAGCCCCCGAGTGGACCGTCTGTGA AGTTTGTAGATCGGGAACGCTGCCAATGGTCACGAAGACATGCGCTCGTT GTGAGCTCCGTCGTTAATTATTACTGTGCTATGTGCTGTTGTGGTTTCAG GTGTTGTCGAACAGAGACTTGGTCTTCCTCCGTATCGCCAACGATCGAGG ATGGACGTACGCAAATAACCCTACCGACGACTCCGTTCTCTTTGAGGAAA TCTCCGGCGAAGTTGCAGAGGATGTGTAAGTGCCCCGCCGTTTCAGCAAA GTTGATGTTGAATGGATTTATGAACAACTTTGCGACACCATCGTTTCGAC TATGTCAACTCTGTTGTTGCTGATAGCTTCCCATACGCTCGACGGCCGTT GGCACGGCACATTTGTCCGCAGATATTCTGCTGTCCCAAATTGATCGTTC GAATTGTTGTTTTACTGATATTCTGCTACATTGCTTGTGACGAGATGCGC ACAGGCGGTGAGAATATTCCATAAAAACTGCTTGTTTGAGTAGGTCGGCT GTGAGGTCTCAACGGATAGACCCCGCTTACACACAGTAATTCATGCGCCT TAATTCAAGTTTGCAATTTGACAAAGCGTCATTTTACCGCAACCACGTGT CGTGTTCTTGTTCTGTTGTGGTCAGCCGAAGCTACGGGTTCCCTGACTCA GCGAAGGATCCAGTCCCAATCCTGTTTGGCCCTGGTCTGGAGTCTCAGCA AACGGTAAGCGAGATATTATAACAACCCTACCTCCTGTGTAGCGTTGAAA GCATTGCATTATGCGGAGAAGACGTCCCGCTTATCTGAAGTGACTAGTGG CAAAATCGTTTGCCCTGATTGCTAAGTGCATGGCCAAGCATCGCTGCAAA TATGCAGTGGTGCAGTCTAACTGGAATTCTCGCCTGGATGAGCCCATGTA CAAATTCACACGTTTGCCGTATGTACACACAGGGCGAGGCACTGATCCCG GGAGAGAGCGCCGCGGCGGTCGAACGATTCACACCAATGGATGGATCGGG TGTCGTGTTCATCAGGCTGGCAGACGGGCGGGGCTGGGTACCCGTGAGGA AAAGGAAAGGGAGCCTCCATATCACAGTTCATGCCGCATAGGGTCGTGAG GAGAGGCGGTTAGCAAATTTGAAGTTGAAGAGGGGGGAGGGATACAGCCC TTCTGTCCGTCAGTGTCCTGCCGCGCCGGTCACAGACTACCAATGGACGA AGCGAGATATGAGAACTGAGGCCATGTATATATGAATTGGGAGCCCGAGA GGTTATCTTGTAGTCCCTCACCAGGTTTGGAGCCTCGGGTGCGATTCAGT ATTGTGGGTGAAAGCAGCCTAGCGTGGGCAACAGATGATGTGTAACACTT GAGCGATCTCGGAACTGCTGAGTCGAACGATATCATGTTTTGAAAGTCTT TAGGTGGAGCTTTCACATTAGGCGAGTCGCTTATTTTTTCCAAGCTTCTT GTCGAGGACTGCGGGGTCGGAATGCCAACGAAGGTATAACGTGTACTGTT ACACCTACAGTTCTATGCAAATACTGCAGTTAGTGGATTTATTTGTGACA CTTGGCACAGTTGTGGCTGATGGCAATAATAACATTTTCGCACGAAATCA TCCAACTGGCACCCTTGGTCATGTCTCTTGGGTGATGTGTATAATGTATC GTACAATATATCCTCTATGATTGAACTTCAGTTGCTAAGTGGTCCGATAT GAGGTATATCTTCTGGTGACAACAGTAAAACTATTGCCCCAGCGCCTGCC TCACAGAGGGAATTAGCAACACCCTGCCACAGATCCGCGCTTTGCTGTGA GTTGATGCGAGCAGGCTGCAATTGCAAGCTTTTCGTCGAACACCTGTTGA CCATATCGGTCACCAACGCCAAGGGATATGTGGCTTGTACTCGCAGACAT ATTCAGGATGATTTTTCTCAGCGTCGAAGTGGAGCTTATTGCAGCGAAGA CAGAGGGGTTGGGATTCAAGAGCCAGGTGCTCAGTCAGTGCAAACACAAG ATGTGTCCTCCAGTCCTTTGCACGGAGCTTTCAGAGCATTTTTGGTGTGT TGGCATGGGTCAGCCGCGTTTGTCGTAGAACGTGCGTTCGGAGAAGGACT GTACGGATTGCCATGATACGTTTTTCAAAGCGCACAGGTCATCCGAACAA CAGACTGTCCCGAACCCGTTCATGAATTCCAGCTACATAATCAGGTGATT TACAGCGCAGAAAACGTTTGCTTCAAGGTTTCGTAGTACTCTTTAACGTT ATGGTGGGCTAGTGTTCGACAGTCGCCCTGTAACAGCCGATCCTCCTAAT TGAGGATCGATTTATAATTGAGGATGAAAATGGCATTTTCGCACCGTGAA AA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11240:2..5803-

>mRNA_H-paniculata_contig11240.794.1 ID=mRNA_H-paniculata_contig11240.794.1|Name=mRNA_H-paniculata_contig11240.794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig11240:2..5803- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAAATTCCGTCGCAATCGGTCAGGAATTTGCTCGCCACTGTCAA
CACGCCAGATACCAGATGAAGAAAATTCCGTCGCAATCGGTCAGGAATTT
GCTCGCCACTGTCAACACGCCAGATACCAGCGTGTCGCCTGCCCGTGAAA
GAGTAGATGACGGTAATCGCATGGAGAACTTGGCCCAGACCGGCCCGCAG
GTGGGCGGTAACTGTGGCATGGGCCAGCGGGCGTTCCACGACACGTTCAA
GGAGGCCATGGAGGGAGGTTGTGTTGAGCGTGTCGCCTGCCCGTGAAAGA
GTAGATGACGGTAATCGCATGGAGAACTTGGCCCAGACCGGCCCGCAGGT
GGGCGGTAACTGTGGCATGGGCCAGCGGGCGTTCCACGACACGTTCAAGG
AGGCCATGGAGGGAGGTTGTGTTGAGGGTCACTTGATGAAGCAAAGCAAA
TATTTCTCGCGATGGAAACCACGCTACTTCCGCCTGGAGGACGGTTTCCT
CACGTACTACGACAAGAAGTCCCTCGTTGGTACTCACAAGAACAAGGGTC
ACTTGATGAAGCAAAGCAAATATTTCTCGCGATGGAAACCACGCTACTTC
CGCCTGGAGGACGGTTTCCTCACGTACTACGACAAGAAGTCCCTCGTTGG
TACTCACAAGAACAAGGGTATGAATCTCACGGCCCATTCCATCACGTCTT
ACACGAACACCAAAAACTGCTTCTGTGTACGCACAGATGAGGGTATGAAT
CTCACGGCCCATTCCATCACGTCTTACACGAACACCAAAAACTGCTTCTG
TGTACGCACAGATGAGATGGTCTGGTTCCTGCTGTCGAAGGATGAGGCAA
GCATGAACAAGTGGATGACGGCGATCAACGCGCAGATCCACGGGTTGTTT
ATTAAGCAGTACAATGTACCAGAGGATAACTACTGGAGCCAGGGATGGTC
TGGTTCCTGCTGTCGAAGGATGAGGCAAGCATGAACAAGTGGATGACGGC
GATCAACGCGCAGATCCACGGGTTGTTTATTAAGCAGTACAATGTACCAG
AGGATAACTACTGGAGCCAGGGGCTTAAGGGGCGCTTCTTCTACCGCATG
GTGGACGACTCACTGCCGCAATGGATTCGGACATACCCGGAAAACGCCGC
CCCGCGTACAGGCGATGGCTTATTCCCGGGGGAGGTAATAGAGGTCACCC
AGGCTTAAGGGGCGCTTCTTCTACCGCATGGTGGACGACTCACTGCCGCA
ATGGATTCGGACATACCCGGAAAACGCCGCCCCGCGTACAGGCGATGGCT
TATTCCCGGGGGAGGTAATAGAGGTCACCCAGGTGTTGTCGAACAGAGAC
TTGGTCTTCCTCCGTATCGCCAACGATCGAGGATGGACGTACGCAAATAA
CCCTACCGACGACTCCGTTCTCTTTGAGGAAATCTCCGGCGAAGTTGCAG
AGGATGTGTGTTGTCGAACAGAGACTTGGTCTTCCTCCGTATCGCCAACG
ATCGAGGATGGACGTACGCAAATAACCCTACCGACGACTCCGTTCTCTTT
GAGGAAATCTCCGGCGAAGTTGCAGAGGATGTCCGAAGCTACGGGTTCCC
TGACTCAGCGAAGGATCCAGTCCCAATCCTGTTTGGCCCTGGTCTGGAGT
CTCAGCAAACGCCGAAGCTACGGGTTCCCTGACTCAGCGAAGGATCCAGT
CCCAATCCTGTTTGGCCCTGGTCTGGAGTCTCAGCAAACGGGCGAGGCAC
TGATCCCGGGAGAGAGCGCCGCGGCGGTCGAACGATTCACACCAATGGAT
GGATCGGGTGTCGTGTTCATCAGGCTGGCAGACGGGCGGGGCTGGGTACC
CGTGAGGAAAAGGAAAGGGAGCCTCCATATCACAGTTCATGCCGCATAGG
GCGAGGCACTGATCCCGGGAGAGAGCGCCGCGGCGGTCGAACGATTCACA
CCAATGGATGGATCGGGTGTCGTGTTCATCAGGCTGGCAGACGGGCGGGG
CTGGGTACCCGTGAGGAAAAGGAAAGGGAGCCTCCATATCACAGTTCATG
CCGCATAG
back to top