mRNA_H-paniculata_contig291.7933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: D7FYM7_ECTSI (Proteasome subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM7_ECTSI) HSP 1 Score: 452 bits (1162), Expect = 9.360e-154 Identity = 220/252 (87.30%), Postives = 236/252 (93.65%), Query Frame = 1
Query: 181 MSYTPVPSSAAPIWHSEGTKNVNILASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
MS P P SA PIWHSEGTK++ +L+SGIDHGVT NPFERRWSPYDFNGGT LAIAG DYVVVAADTRMSTGYSIMSRDQ+KLH+LTSKCVIASAGCKTDVTTLWKELD MTMYDH+M+KEMATPAVAQML+NTLY RRFFPYYSFNVLCGLD GKGSVFSYDAIGSFERVP+SASGSGQTYIIPLLDNLVEFKTR+D+KP RS +ETVELVKE+L+TAGERDIYTGDA+EITIISKDGTSTQMFPLKKD
Sbjct: 1 MSQRPSPHSA-PIWHSEGTKDLQVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A835ZC48_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC48_9STRA) HSP 1 Score: 372 bits (954), Expect = 2.590e-122 Identity = 182/247 (73.68%), Postives = 210/247 (85.02%), Query Frame = 1
Query: 199 PSSAA-PIWHSEGTKNVNILASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
PS+ A +W +EG +V S IDHGVT NPFERRWSPYDFNGGT LA+AG DYVV+ ADTRMSTGY IMSRDQ+KLH+LTSKCVIASAGC++DVTTLWK LD RM MY H++ K+M+TPA AQML+NTLY RRFFPYYSFNVL GLDA+GKG+VFSYDAIGS+ERV +SASGSGQ+YIIP++DNLV FKTR D KP R+ ETV+LVK+V ITAGERDIYTGDA+EI II+ GT TQ+F LKKD
Sbjct: 11 PSAPALAMWSTEGQSDVR--PSDIDHGVTQNPFERRWSPYDFNGGTTLAVAGEDYVVIGADTRMSTGYQIMSRDQTKLHQLTSKCVIASAGCRSDVTTLWKMLDHRMVMYKHNIGKDMSTPAAAQMLANTLYYRRFFPYYSFNVLAGLDAEGKGAVFSYDAIGSYERVEYSASGSGQSYIIPVMDNLVGFKTRLDPKPVRTAEETVDLVKDVFITAGERDIYTGDAVEICIITATGTQTQIFNLKKD 255
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A7S2DDA1_9STRA (Proteasome subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDA1_9STRA) HSP 1 Score: 345 bits (886), Expect = 1.770e-111 Identity = 167/243 (68.72%), Postives = 195/243 (80.25%), Query Frame = 1
Query: 214 PIWHSEGTKNVNI--LASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
PIWHSEG +V + A IDHGVT NP+ERR+SPYDFNGGT LA+AG D+VVVA DTRMS+GY I+SR SKLH LTSKC++A+AGCKTDV TL L+ +M MYDHD KEM+T A AQMLSNTLY RRFFPYYSFNVL GLD +G+G+VFSYDAIGS+ER PFSASGSGQ+Y+IPL+DNLV FKTR D P + E V +VK+ +TAGERDIYTGD +EI++I KDG T FPLKKD
Sbjct: 54 PIWHSEGQASVPLGPTADTIDHGVTQNPYERRFSPYDFNGGTTLAVAGKDFVVVAGDTRMSSGYEILSRKVSKLHPLTSKCILAAAGCKTDVDTLTNMLNIKMQMYDHDCGKEMSTTAAAQMLSNTLYYRRFFPYYSFNVLAGLDEEGRGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRTDVMPDFTSEEAVNIVKDAFVTAGERDIYTGDTLEISVIKKDGIETITFPLKKD 296
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A7S2SKB7_9STRA (Proteasome subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKB7_9STRA) HSP 1 Score: 340 bits (872), Expect = 5.600e-110 Identity = 166/256 (64.84%), Postives = 200/256 (78.12%), Query Frame = 1
Query: 169 RVGAMSYTPVPSSAAPIWHSEGTKNVNILASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
R GA TP+ +W SEG + S DHGVT NP+ERR+SPYDFNGGT LAIAG D+VVVAADTR+S+GY I+SR+ SKLH LT +CV+A+AGCKTDV TL L RM MY+HDM K M TPAVAQMLSNTLY RRFFPYYSFNVL G+D+DGKG+VFSYDAIGS+ERVP+S+SGSGQ Y++PL+DNLV FK RQD P ++ E V +VK+ ITAGERDIYTGDA+EI +I+ G ++++ PLKKD
Sbjct: 7 RAGAPPPTPI------MWSSEGAVALPAEPSAFDHGVTQNPYERRFSPYDFNGGTTLAIAGKDFVVVAADTRLSSGYEILSRNVSKLHPLTGRCVLAAAGCKTDVDTLRNTLHARMQMYEHDMGKAMDTPAVAQMLSNTLYYRRFFPYYSFNVLAGIDSDGKGAVFSYDAIGSYERVPYSSSGSGQNYMVPLMDNLVCFKNRQDTPPELTMEEVVRIVKDAFITAGERDIYTGDAVEIKVITASGVASEIMPLKKD 256
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A7S2FLM8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLM8_9STRA) HSP 1 Score: 336 bits (861), Expect = 3.300e-108 Identity = 165/242 (68.18%), Postives = 193/242 (79.75%), Query Frame = 1
Query: 214 PIWHSEGTKNVNI-LASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
PIW SEG IDHGVT NP+ERR+SPYDFNGGT LA++G D+VVVA DTRMS+GY I SR+ KLH+LTSK V+A+AGCKTDV TL L RM MY+HD +KEM+T AVAQMLSNTLY RRFFPYYSFNVL GLD +GKG+VFSYDAIGS+ER PFSASGSGQ+Y+IPL+DNLV FKTR D P +V E V +VK+ +TAGERDIYTGDA+EI +IS G +T++FPLKKD
Sbjct: 23 PIWSSEGPSAGEFGKRDHIDHGVTENPYERRFSPYDFNGGTTLAVSGKDFVVVAGDTRMSSGYEIKSRNVPKLHQLTSKTVLAAAGCKTDVDTLTNLLRTRMQMYEHDCNKEMSTTAVAQMLSNTLYGRRFFPYYSFNVLAGLDEEGKGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRLDPVPDMTVEEIVSIVKDAFVTAGERDIYTGDAVEIKVISATGVTTELFPLKKD 264
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A7S2XWL8_9STRA (Proteasome subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWL8_9STRA) HSP 1 Score: 324 bits (830), Expect = 1.070e-103 Identity = 153/254 (60.24%), Postives = 194/254 (76.38%), Query Frame = 1
Query: 193 PVPSSAAPIWHSEGTKN------VNILASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
P + PIWHSE + + + + S H V+ P + RW PY+FNGGT LAIAG ++VVVAADTRMS GY+I+SR++SKLHKLT KC++A+AGC+TDVTTL LD RM MY H++ EM T AVAQML+NTLY RRFFPYYSFNVLCG+D +GKG V+SYDAIGSFE VP+SASGSGQ+YIIPL+D+ V FK R KP ++ ETV++VK +TAGERDIYTGD +EI +++ +G +++FPLKKD
Sbjct: 2 PTVQNGVPIWHSESSNSTVKPYQLPVNGSSQKHEVSGGPVQHRWGPYEFNGGTTLAIAGSNFVVVAADTRMSQGYNILSRNESKLHKLTEKCILAAAGCQTDVTTLRNVLDIRMQMYQHNVGHEMPTTAVAQMLANTLYYRRFFPYYSFNVLCGIDKEGKGVVYSYDAIGSFESVPYSASGSGQSYIIPLMDSTVAFKNRTQPKPNYTIEETVDIVKSAFVTAGERDIYTGDEVEIKVLTAEGCRSEIFPLKKD 255
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: W7TXA2_9STRA (Proteasome subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXA2_9STRA) HSP 1 Score: 315 bits (806), Expect = 5.460e-100 Identity = 156/266 (58.65%), Postives = 197/266 (74.06%), Query Frame = 1
Query: 163 STRVGAMSYTPVPSSAAPIWHSEGTKNVNILAS--------GIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
+T + A PVPS IW +EG + A+ IDHGVT P+ERR+SPYDFNGGTCLAIAG D+ VVA DTR+STGY I+SR+ KL KLTSK V+ASAGC TDV TL + LD R+ MY+HD KE++TPAVAQ+L NTLY RRFFPYY+FNVL G+D +GKG VFSYDA+GS ERV +SASGSGQ ++IP++DN+V FK RQD KP + ++ V + K+ +TAGERDIYTGDA+ I++I+ G +T+ F LK+D
Sbjct: 2 TTHMKAQQSVPVPS----IWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A6U3TS88_9STRA (Proteasome subunit beta n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TS88_9STRA) HSP 1 Score: 310 bits (795), Expect = 4.280e-98 Identity = 151/249 (60.64%), Postives = 188/249 (75.50%), Query Frame = 1
Query: 193 PVPSSAAPIWHSEGTKNVNIL-ASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
PV + S NI+ S IDHG+T P+ER +SPY+FNGGT LAI+G DY VVAADTR+S+GY I+SR+ SKLH LT +CV+ SAGCKTDV L LD +M +Y H+ K MATP+VAQML NTLY +RFFPYYSFNVL G+D++GKG+V+SYDAIGSFER PFSASGSGQ ++IPL+DN++ K R D++ V E VE+VK+ +TAGERDIYTGDA+EI II+K+G T+MF LK D
Sbjct: 32 PVRFDGTNLSISSNNPTANIIDGSSIDHGITKAPYERSFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTERCVLGSAGCKTDVDQLRSVLDIKMKVYQHNHRKPMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRCDEQRDLPVEEVVEIVKDAFLTAGERDIYTGDAVEIKIITKEGIRTEMFNLKAD 280
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: K0S6G4_THAOC (Proteasome subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6G4_THAOC) HSP 1 Score: 310 bits (794), Expect = 6.680e-98 Identity = 147/229 (64.19%), Postives = 182/229 (79.48%), Query Frame = 1
Query: 250 ILASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
I SGIDHGVT P+ERR+SPY+FNGGT LAI+G DY VVAADTR+S+GY I+SR+ SKLH LT +CV+ SAGCKTDV L LD +M +Y H+ K MATP+VAQML NTLY +RFFPYYSFNVL G+D++GKG+V+SYDAIGSFER PFSASGSGQ+++IPL+DN++ K R D++ E VE+VK+ +TAGERDIYTGDA++I +I+KDG Q F LK D
Sbjct: 55 IDGSGIDHGVTQAPYERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Match: A0A1E7F375_9STRA (Proteasome subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F375_9STRA) HSP 1 Score: 307 bits (786), Expect = 6.520e-97 Identity = 147/240 (61.25%), Postives = 183/240 (76.25%), Query Frame = 1
Query: 217 IWHSEGTKNVNILASGIDHGVTHNPFERRWSPYDFNGGTCLAIAGVDYVVVAADTRMSTGYSIMSRDQSKLHKLTSKCVIASAGCKTDVTTLWKELDFRMTMYDHDMDKEMATPAVAQMLSNTLYSRRFFPYYSFNVLCGLDADGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDKKPTRSVSETVELVKEVLITAGERDIYTGDAIEITIISKDGTSTQMFPLKKD 936
I +SEG N IDHGVT NP+ERR+SPYDFNGGTC+AIAG DY V+AADTR+S+GY I+SR+ SKLH L+ KC++ SAGCKTDV L LD +M MY H+ K M+TPAVAQML NTLY +RFFPYY+FNV G+D +GKG+V+SYDAIGSFER P +A+GSGQ YIIPLLDN++ + R D+K E VE+VK+ ++ GERDIYTGD +EI++I+KDG T F LK+D
Sbjct: 33 IHNSEGP---NASLGKIDHGVTENPYERRFSPYDFNGGTCVAIAGPDYAVIAADTRLSSGYEILSRNMSKLHPLSGKCILGSAGCKTDVDQLRSVLDIKMKMYLHNHRKTMSTPAVAQMLGNTLYYKRFFPYYAFNVFGGIDEEGKGAVYSYDAIGSFERTPVTATGSGQAYIIPLLDNVIAHRNRLDEKRDLPKEEVVEIVKDAFLSCGERDIYTGDQVEISVITKDGIETSFFALKRD 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig291.7933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig291.7933.1 >prot_H-paniculata_contig291.7933.1 ID=prot_H-paniculata_contig291.7933.1|Name=mRNA_H-paniculata_contig291.7933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp MSYTPVPSSAAPIWHSEGTKNVNILASGIDHGVTHNPFERRWSPYDFNGGback to top mRNA from alignment at H-paniculata_contig291:1173..8729- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig291.7933.1 ID=mRNA_H-paniculata_contig291.7933.1|Name=mRNA_H-paniculata_contig291.7933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7557bp|location=Sequence derived from alignment at H-paniculata_contig291:1173..8729- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig291:1173..8729- >mRNA_H-paniculata_contig291.7933.1 ID=mRNA_H-paniculata_contig291.7933.1|Name=mRNA_H-paniculata_contig291.7933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig291:1173..8729- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |