|
|
Homology
BLAST of mRNA_H-paniculata_contig29064.7924.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.640e-18 Identity = 79/151 (52.32%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 1 QEALSKALALDGTDVSGRVIQVQRSLPRSSRPAKEAAGSAQTAARDSEPAGAMVGGNGVDKDSNLETPTXXXXXXXXXXXXXXXXGKAREGAGGEGVMGAGGVKWPVHPTTVFVKGLGSGATSEGLKEAFLGVGRVVGARVVEDKKTHKKK 453
+EAL+KALALDGTD+ GR + VQRSLPR SR K S XXXXXXXXXXXXXXXX GE V+ A G+KWP HPTTVFV+GLG ATS+ L+EAF+GVG +V ARVVEDK+T + K
Sbjct: 750 EEALAKALALDGTDMDGRTLSVQRSLPRGSRSVKGG----------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEVVVAASGIKWPAHPTTVFVRGLGLSATSQDLREAFVGVGPMVEARVVEDKRTRETK 890
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 92.0 |
| Seed ortholog evalue | 2.5e-16 |
| Seed eggNOG ortholog | 2880.D8LJP0 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | positive regulation of histone deubiquitination |
| EggNOG OGs | KOG0128@1,KOG0128@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 453 |
| Cds size | 453 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29064.7924.1 >prot_H-paniculata_contig29064.7924.1 ID=prot_H-paniculata_contig29064.7924.1|Name=mRNA_H-paniculata_contig29064.7924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
QEALSKALALDGTDVSGRVIQVQRSLPRSSRPAKEAAGSAQTAARDSEPA
GAMVGGNGVDKDSNLETPTTTTTTTTSKKGKSKKRGKAREGAGGEGVMGA
GGVKWPVHPTTVFVKGLGSGATSEGLKEAFLGVGRVVGARVVEDKKTHKK
K back to topmRNA from alignment at H-paniculata_contig29064:769..2936- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig29064.7924.1 ID=mRNA_H-paniculata_contig29064.7924.1|Name=mRNA_H-paniculata_contig29064.7924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2168bp|location=Sequence derived from alignment at H-paniculata_contig29064:769..2936- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAGCACTGTCGAAGGCTCTGGCACTTGATGGGACCGATGTGTCAGG
CAGAGTCATCCAAGTGCAGAGATCTCTGCCACGCTCGTCCCGTCCGGCGA
AGGAGGCCGCTGGCTCCGCCCAGGTCGAGGTGAGAGTGATTGTGCTGGAT
GAGATGTGGTCTTGTTTAGCGTGAATTTCGTTTGGTAGGTAGGTAGGTAG
GTAGGTTGGTTGGTTGGTTGGTTGGCATATTTGTCAGCCATTGTATCTCT
CTTGTGTGTTTCGTGTCACATCGGACTCTGCGGAAAAAGACAGGTATATA
GACACGTACATGAGATACGCACATTAATCACACCTATTGTAATAAATTAG
AGAGCACTAGCTGGCCGTCTGAATCTTGAATCTTTAGCAAAGGGAAATGA
AATAAGCCAACAAATACTCCCACGTACACGGACTTCCGGAGCGATAAAAA
CAAAAAAAAACATTATTTTAGTGCATCAACATTGTTGGCTGCTTGCCCTT
TTCAAATGAAAGACTAACTCCGTTGTCCACAGGGGAAGCGAACTATACAA
CAAAATGACACGTGGAGGAGGAAAAATGTTCTAATTATGCATACATTTAA
AATTATGAATGTATATATACATATATACACATATTTTACCCTCACGGCGA
AGAAATACCTCACCAAAAGTGTTCGTCTGGAGCAAAATATGGCGGTGGCC
TCAGTTTGCAGGCTACCGAATGTGCTTCACGGTCCCGACAGAATTTCGTC
TTTTTTTTTATGGTTTTCCGGCGGTACCGCAGGAATTGTGCATCTACTTG
GATGCCTTGATTCCAACACTCCACAGATCCCATTCGAATTTTGTACCTTA
TTCTTGGGTTTTCACTTGTTATGTTGTACCTCTTTCATGTGTTCTAGTAG
GTGGGGACGCTTTTGATGTGTCGAGGTTTTACGTTAGGTTGTTCCTTGTA
CTTTAGATGTCGTTCTCGTTGTCATGATTTCGGAACATTTTTTCGAGTCT
GTGCTCAAGTATATGTGAAAAATACGAACCTGACTGGGAGTATTGTGCCT
GGTTACAAGCGCAGCGAGTCCTTTTACGCGGATCCGCGACAACGCACTCT
GGAGTATGATTAGCCGTGGTTATACTACTATTAATAGTGTAGGTGAAACT
CGAGACGGGACAAGTGCAGTTGGTGTTGGCTCATGAGAACAGATATTGTA
TCATCTCATGCGTACAGTGTTGGGGAGGGAGGGGGGCGGGGGTAGGGGGG
GAGGGAGGACGGAGTTTAAGCCTCGCGAGGAAATGTATATACTGTGTTTG
TAAAGGCAGTTAATTACTTGAAAATATGGAATTGTGAATGGTTATTACGG
TCAGCTGAAAAGAAACGGAATCGATGTGGCCAGTACCCTTTTTTTTTTTT
CTCGAAATGGTTCGATTGATCTTATTGATAAACTGACAGGTATTCTGGTA
GTACAGCTTTATTCTCGTTTTCAAGGCTACTAGTACTTAGTGCACATGAA
GGGTGAAAGTGAAGGCTACTCGAGCAGTGCTTTGCTCGTTACCTGTCTGT
TTGTCTCTTCGTCTGTCTCTGTCTCTTCGTCTGTCTCTATTTCTTTACAC
CCGGTTTACATGGTTCTCTCTCTGTTCGATCCTGTTGATTTGTGGGTTTG
TCATCACCATAACTCGCTGCTTTCTTTACTCCTCTAAATTTCGCCCTCAA
GATAGCTCCCCACTGTGCTCCTCGGCACAGAATCCGGCACCTATAGCAGG
AACCCAACCACAATCCGCTAATGCTGGTGCTGGTGCTGGTCCTGGTGCTG
GTGCTGATGCTGGTAACATGGAGGGCACCTCCGTACAGACAGCAGCCCGA
GACAGTGAGCCAGCAGGAGCGATGGTGGGGGGAAATGGTGTCGACAAGGA
CAGCAACCTCGAAACACCAACGACAACGACAACGACAACGACAAGCAAGA
AGGGGAAATCGAAGAAGAGAGGGAAGGCTCGAGAAGGAGCGGGTGGCGAG
GGAGTTATGGGGGCTGGAGGGGTGAAGTGGCCTGTTCATCCCACCACGGT
GTTCGTGAAAGGGTTGGGGAGCGGTGCGACGTCGGAGGGCTTGAAAGAGG
CGTTTTTGGGGGTGGGAAGAGTGGTGGGAGCTAGGGTCGTGGAGGACAAG
AAGACGCACAAGAAGAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig29064:769..2936- >mRNA_H-paniculata_contig29064.7924.1 ID=mRNA_H-paniculata_contig29064.7924.1|Name=mRNA_H-paniculata_contig29064.7924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig29064:769..2936- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAGCACTGTCGAAGGCTCTGGCACTTGATGGGACCGATGTGTCAGG
CAGAGTCATCCAAGTGCAGAGATCTCTGCCACGCTCGTCCCGTCCGGCGA
AGGAGGCCGCTGGCTCCGCCCAGCAGGAAGCACTGTCGAAGGCTCTGGCA
CTTGATGGGACCGATGTGTCAGGCAGAGTCATCCAAGTGCAGAGATCTCT
GCCACGCTCGTCCCGTCCGGCGAAGGAGGCCGCTGGCTCCGCCCAGACAG
CAGCCCGAGACAGTGAGCCAGCAGGAGCGATGGTGGGGGGAAATGGTGTC
GACAAGGACAGCAACCTCGAAACACCAACGACAACGACAACGACAACGAC
AAGCAAGAAGGGGAAATCGAAGAAGAGAGGGAAGGCTCGAGAAGGAGCGG
GTGGCGAGGGAGTTATGGGGGCTGGAGGGGTGAAGTGGCCTGTTCATCCC
ACCACGGTGTTCGTGAAAGGGTTGGGGAGCGGTGCGACGTCGGAGGGCTT
GAAAGAGGCGTTTTTGGGGGTGGGAAGAGTGGTGGGAGCTAGGGTCGTGG
AGGACAAGAAGACGCACAAGAAGAAGACAGCAGCCCGAGACAGTGAGCCA
GCAGGAGCGATGGTGGGGGGAAATGGTGTCGACAAGGACAGCAACCTCGA
AACACCAACGACAACGACAACGACAACGACAAGCAAGAAGGGGAAATCGA
AGAAGAGAGGGAAGGCTCGAGAAGGAGCGGGTGGCGAGGGAGTTATGGGG
GCTGGAGGGGTGAAGTGGCCTGTTCATCCCACCACGGTGTTCGTGAAAGG
GTTGGGGAGCGGTGCGACGTCGGAGGGCTTGAAAGAGGCGTTTTTGGGGG
TGGGAAGAGTGGTGGGAGCTAGGGTCGTGGAGGACAAGAAGACGCACAAG
AAGAAG back to top
|