prot_H-paniculata_contig2906.7923.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2906.7923.1
Unique Nameprot_H-paniculata_contig2906.7923.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length244
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Match: A0A6H5KZA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.130e-35
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 0 
Query:  158 VTVEWEDGQMFVTVHRPIASEWLVGLVNRYMHGPIPMKVERCRAEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDEVRK 243
            V VEWE GQ+F+ + R +AS++L+ L+NRYMHGPIPMKVE CR EMLRAC+SP+Q+LRQGSF++TVVGLR FGRRTHEDEWDEV++
Sbjct:  176 VDVEWEGGQLFLVLRRAVASDFLIDLINRYMHGPIPMKVESCRVEMLRACLSPSQILRQGSFQATVVGLRTFGRRTHEDEWDEVQR 261
[Close]
BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.930e-35
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 0 
Query:  158 VTVEWEDGQMFVTVHRPIASEWLVGLVNRYMHGPIPMKVERCRAEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDE 240
            V VEWE GQ+F+ + R +AS++L+ LVNRYMHGPIPMKVE CRAEMLRAC+SP+Q+LRQGSF++TVVGLR FGRRTHEDEWDE
Sbjct:  183 VDVEWEGGQLFLVLRRAVASDFLINLVNRYMHGPIPMKVESCRAEMLRACLSPSQILRQGSFQATVVGLRTFGRRTHEDEWDE 265
[Close]
BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Match: A0A836C889_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C889_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.150e-12
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:  158 VTVEWEDGQMF---VTVHRPIASEWLVGLVNRYMHGPIPMKVERCRAEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDEVR 242
            V++ W+D   +   + + +  ASE  + L+N YMHGPIP KVE    + +R  + P    R+GS  +   GLR+ GRRTHEDEWDE R
Sbjct:   80 VSLLWDDDSSWWPVLAMDKCEASERAINLINHYMHGPIPTKVEAISFDTVRIPLLPLAAWRRGSIAAQATGLRSTGRRTHEDEWDEAR 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZA2_9PHAE3.130e-3572.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C6_ECTSI5.930e-3575.90C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836C889_9STRA2.150e-1243.18C2 domain-containing protein n=1 Tax=Tribonema min... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..63
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 64..243
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..40
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 39..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2906contigH-paniculata_contig2906:14674..18424 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2906.7923.1mRNA_H-paniculata_contig2906.7923.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2906 14661..18424 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2906.7923.1 ID=prot_H-paniculata_contig2906.7923.1|Name=mRNA_H-paniculata_contig2906.7923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MPPPVPVSSTTIAVAGWVAATSTAMVFAVVLSALRGGVAAVLLTVTFSAP
TVLVIFLLCLWGATKYCPGLLGIVVQVLVVEVIRLSGALADDDEEEEDES
WSRMKGEERAARLGKEWAEGRLSECRHERWRKQQQGQEEEETRRRRQGRR
RRRRRRRVTVEWEDGQMFVTVHRPIASEWLVGLVNRYMHGPIPMKVERCR
AEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDEVRK*
back to top