mRNA_H-paniculata_contig29030.7916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29030.7916.1
Unique NamemRNA_H-paniculata_contig29030.7916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29030.7916.1 vs. uniprot
Match: D7FIQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ2_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 7.550e-34
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 IIPSSQVAWEEGDLVEGQAMYNEAIRTDPRLLDEDFIWLILRWPEQPLAMVRTLRSASKAPKGSGLDALGLPSLLQMPREII 246
            ++ ++ VAW +G+LVE Q M+ EAIR D RL+DE++IWLILRWPEQPL+MV+ LRSAS APKGSGL+ALGL +LL MPRE+I
Sbjct:    2 LLAAASVAWSDGELVESQEMFAEAIRLDGRLMDENYIWLILRWPEQPLSMVKALRSASSAPKGSGLEALGLKTLLSMPREVI 83
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BLAST of mRNA_H-paniculata_contig29030.7916.1 vs. uniprot
Match: A0A6H5JBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBX7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.930e-31
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 IIPSSQVAWEEGDLVEGQAMYNEAIRTDPRLLDEDFIWLILRWPEQPLAMVRTLRSASKAPKGSGLDALGLPSLLQMPREII 246
            ++ ++ VAW +G+LVE Q MY EAIR D RL+DE++IWLILRWPEQPL+MV+ LRSAS APKGSGL+ALGL +LL MPRE+I
Sbjct:  355 LLAAASVAWSDGELVESQEMYAEAIRLDQRLMDENYIWLILRWPEQPLSMVKALRSASSAPKGSGLEALGLKTLLSMPREVI 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29030.7916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIQ2_ECTSI7.550e-3467.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBX7_9PHAE3.930e-3168.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29030contigH-paniculata_contig29030:1700..1948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929886.059478-CDS-H-paniculata_contig29030:1699..19481622929886.059478-CDS-H-paniculata_contig29030:1699..1948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29030 1700..1948 -
1691481055.1369393-CDS-H-paniculata_contig29030:1699..19481691481055.1369393-CDS-H-paniculata_contig29030:1699..1948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29030 1700..1948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29030.7916.1prot_H-paniculata_contig29030.7916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29030 1700..1948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29030.7916.1

>prot_H-paniculata_contig29030.7916.1 ID=prot_H-paniculata_contig29030.7916.1|Name=mRNA_H-paniculata_contig29030.7916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
IIPSSQVAWEEGDLVEGQAMYNEAIRTDPRLLDEDFIWLILRWPEQPLAM
VRTLRSASKAPKGSGLDALGLPSLLQMPREII*
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mRNA from alignment at H-paniculata_contig29030:1700..1948-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29030.7916.1 ID=mRNA_H-paniculata_contig29030.7916.1|Name=mRNA_H-paniculata_contig29030.7916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig29030:1700..1948- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATACCCTCTTCGCAGGTGGCATGGGAAGAGGGCGATCTCGTAGAGGG
CCAGGCCATGTACAACGAGGCCATCCGAACTGACCCGCGTCTTCTAGACG
AAGACTTCATCTGGCTGATACTTCGCTGGCCGGAGCAGCCACTCGCCATG
GTGAGGACGCTGCGCTCCGCCTCCAAGGCGCCGAAGGGTAGCGGCTTGGA
TGCTCTCGGCCTGCCGTCTCTATTGCAGATGCCGCGGGAGATCATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig29030:1700..1948-

>mRNA_H-paniculata_contig29030.7916.1 ID=mRNA_H-paniculata_contig29030.7916.1|Name=mRNA_H-paniculata_contig29030.7916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig29030:1700..1948- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATACCCTCTTCGCAGGTGGCATGGGAAGAGGGCGATCTCGTAGAGGG
CCAGGCCATGTACAACGAGGCCATCCGAACTGACCCGCGTCTTCTAGACG
AAGACTTCATCTGGCTGATACTTCGCTGGCCGGAGCAGCCACTCGCCATG
GTGAGGACGCTGCGCTCCGCCTCCAAGGCGCCGAAGGGTAGCGGCTTGGA
TGCTCTCGGCCTGCCGTCTCTATTGCAGATGCCGCGGGAGATCATTTGAA
TTATACCCTCTTCGCAGGTGGCATGGGAAGAGGGCGATCTCGTAGAGGGC
CAGGCCATGTACAACGAGGCCATCCGAACTGACCCGCGTCTTCTAGACGA
AGACTTCATCTGGCTGATACTTCGCTGGCCGGAGCAGCCACTCGCCATGG
TGAGGACGCTGCGCTCCGCCTCCAAGGCGCCGAAGGGTAGCGGCTTGGAT
GCTCTCGGCCTGCCGTCTCTATTGCAGATGCCGCGGGAGATCATTTGA
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