mRNA_H-paniculata_contig2902.7913.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2902.7913.1
Unique NamemRNA_H-paniculata_contig2902.7913.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: D8LI17_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 4.300e-124
Identity = 168/192 (87.50%), Postives = 178/192 (92.71%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANEN 576
            MSI+LPELPW KDALAPHISAETI+YHYGKHHAAYVTKLNAAIS+N+ELEGK+L+EIM TASGGVFNNAAQVWNHTFYWKSLSP GGGEPTGA+KEAIE+ +GSFE FKKAF  TAAGHFGSGWAWLVKTE GGV VVGTHDASNPVKEG G P+LTCDVWEHAYYIDYRNSRPGYI AWW LVNW FANEN
Sbjct:    1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEEKFGSFEAFKKAFSDTAAGHFGSGWAWLVKTESGGVDVVGTHDASNPVKEGKGTPILTCDVWEHAYYIDYRNSRPGYIAAWWNLVNWDFANEN 192
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A7S2V2G5_9STRA (Superoxide dismutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G5_9STRA)

HSP 1 Score: 301 bits (771), Expect = 2.300e-99
Identity = 133/193 (68.91%), Postives = 159/193 (82.38%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANENF 579
            M+I LP LP+ K ALAPHIS ET+ +HY KHHA YVTKLNAA+  + E EGK+LEEIM  ASGG+FNNAAQ+WNHTFYW S+SP GGGEP+G I +AI  ++GSFE FK+ F A+A GHFGSGWAWL K +DG +++V THDASNP+KEG GKP+LTCDVWEHAYYIDYRN+RP YI AWW ++NW FAN N+
Sbjct:    1 MAIQLPPLPYEKGALAPHISEETLSFHYEKHHAGYVTKLNAALPGS-EFEGKSLEEIMMNASGGMFNNAAQIWNHTFYWNSMSPNGGGEPSGPISDAINSSFGSFESFKEKFSASAGGHFGSGWAWLCKKDDGSLEIVDTHDASNPLKEGKGKPILTCDVWEHAYYIDYRNARPSYIAAWWNVINWDFANSNY 192
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A835ZFU3_9STRA (Superoxide dismutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU3_9STRA)

HSP 1 Score: 295 bits (754), Expect = 9.950e-97
Identity = 135/193 (69.95%), Postives = 162/193 (83.94%), Query Frame = 1 
Query:    4 SIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQ--VWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANEN 576
            SI+L  LP+ K+ALAPHIS ET++YH+GKHHAAYVTKLNAAI+++A L+ KTLEEIM ++SGG F+NAAQ  V+NH FYW SLSP+GGG PTG I +AI++++G F+ FK AF A A GHFGSGWAWLVK +DG +KVV THDASNPV E LGKP++TCDVWEHAYYIDYRN+RP Y+ AWW LVNW FAN N
Sbjct:    4 SIVLMTLPYAKNALAPHISEETLEYHHGKHHAAYVTKLNAAIAADAGLQNKTLEEIMLSSSGGTFSNAAQASVFNHDFYWHSLSPEGGGTPTGPIADAIKESFGDFDKFKAAFDAAAGGHFGSGWAWLVKADDGSLKVVSTHDASNPVVEKLGKPIITCDVWEHAYYIDYRNARPSYLAAWWNLVNWDFANVN 196
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: W7T7U7_9STRA (Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7U7_9STRA)

HSP 1 Score: 290 bits (742), Expect = 5.910e-95
Identity = 132/191 (69.11%), Postives = 155/191 (81.15%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATA-SGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFAN 570
            M+I LP LPW K+ALAPHISAETIDYHYGKHHAAYVTKLN  I  +    GK+++EIM  A +GG+FNNAAQVWNHTFYW S++P  GG P+G I + I  A+GSF++FK  F   AAGHFGSGWAWLV  +DG ++VV THDASNP+KEGLG PLLTCDVWEHAYY+DYRN+RP Y+EAWW LVNW +AN
Sbjct:    1 MAIELPPLPWDKNALAPHISAETIDYHYGKHHAAYVTKLNGMIKDDPAYAGKSVKEIMLAAPAGGLFNNAAQVWNHTFYWNSMAPNAGGAPSGPIADKINAAFGSFDNFKSQFSTAAAGHFGSGWAWLV-LKDGKLEVVSTHDASNPLKEGLGTPLLTCDVWEHAYYVDYRNARPAYVEAWWSLVNWEWAN 190
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A6V1U4U1_HETAK (Superoxide dismutase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U4U1_HETAK)

HSP 1 Score: 287 bits (734), Expect = 2.680e-93
Identity = 128/192 (66.67%), Postives = 150/192 (78.12%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANEN 576
            M I LP LP+ KDALAPHISAET++YHYGKHHA YV KLNAAI      + KT+++IM    GG++NNAAQ+WNHTFYWKS+SP GGG PTG I +AI  ++GSF+ FK+ F A A GHFGSGWAWL K  DG + +  THDA N +KEGLG PLLTCDVWEHAYYIDYRN+RP Y+ AWW L+NW FANEN
Sbjct:   33 MPIELPALPYEKDALAPHISAETLEYHYGKHHAGYVAKLNAAIEGTDHAD-KTVDQIMMECEGGLYNNAAQIWNHTFYWKSMSPSGGGAPTGPIADAINASFGSFDAFKEQFSAVAGGHFGSGWAWLCKNADGSLSIQETHDAGNVLKEGLGTPLLTCDVWEHAYYIDYRNARPQYVAAWWNLINWEFANEN 223
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A0G4G4J6_VITBC (Superoxide dismutase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G4J6_VITBC)

HSP 1 Score: 280 bits (717), Expect = 3.490e-91
Identity = 125/192 (65.10%), Postives = 146/192 (76.04%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANEN 576
            M+  LP LPW K+ LAPHIS ETI+YHYGKHHA YVTKLN  +      + K L +++ T  GG+FNNAAQ WNH+FYW SLSP GGGEP GAIK AIE+ +GSF+ FK  F A AAGHFGSGW WLVK  DG +K+  THDA NP+++G G PLLTCDVWEHAYY+DYRN RP Y++AWW LVNW FAN N
Sbjct:    1 MAFQLPALPWAKNGLAPHISEETINYHYGKHHATYVTKLNGLVEGTENAK-KDLADLVKTTDGGLFNNAAQHWNHSFYWNSLSPSGGGEPKGAIKAAIEQDFGSFQKFKDDFSANAAGHFGSGWVWLVKGTDGKLKIHQTHDAGNPLRDGAGVPLLTCDVWEHAYYVDYRNDRPSYVKAWWNLVNWDFANNN 191
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A7Y5GYH9_9DELT (Superoxide dismutase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GYH9_9DELT)

HSP 1 Score: 278 bits (710), Expect = 3.620e-90
Identity = 129/193 (66.84%), Postives = 149/193 (77.20%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANENF 579
            MS  LPELP+ KDAL PHISAETI+YHYGKHHAAYV  LN  ++  A  EGK+LEE++ T+SGG+FNNAAQ+WNHTFYW SLSP GGGEPTGA+  AI   +G F  FK+ F A AAG FGSGWAWLVK+ DG +K+V T +A  P+      PLLTCDVWEHAYYIDYRN+RP YI AWW LVNW FA+ NF
Sbjct:    1 MSYQLPELPYAKDALQPHISAETIEYHYGKHHAAYVANLNRLVAGTA-FEGKSLEEVVRTSSGGIFNNAAQIWNHTFYWHSLSPNGGGEPTGALAAAITHTFGDFATFKEKFSAAAAGQFGSGWAWLVKSADGSLKIVTTANAETPLTT-TDTPLLTCDVWEHAYYIDYRNARPAYIAAWWNLVNWEFASANF 191
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A7C7YMU4_9ARCH (Superoxide dismutase n=2 Tax=Archaea TaxID=2157 RepID=A0A7C7YMU4_9ARCH)

HSP 1 Score: 277 bits (709), Expect = 5.130e-90
Identity = 124/187 (66.31%), Postives = 153/187 (81.82%), Query Frame = 1 
Query:   13 LPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANE 573
            LP+LP+  +AL PHIS +T+ +HYGKHHA YV KLNAAI+   ELEGKTLEE++ + SGG+FNNAAQ+WNHTFYW S+SP GGGEPTGAI   I++ +GSFE+FK AF A A GHFGSGWAWLV   +GG+++V THDA NP+ +GL  P+LTCDVWEHAYYID +N+RP YI AWW+LVNW +AN+
Sbjct:    5 LPDLPFEMNALEPHISEKTLSFHYGKHHAGYVGKLNAAIAGT-ELEGKTLEELIMSQSGGIFNNAAQIWNHTFYWNSMSPNGGGEPTGAIAGKIDETFGSFEEFKTAFTAAAGGHFGSGWAWLVMNSNGGLEIVDTHDAGNPLTDGL-TPILTCDVWEHAYYIDRKNARPAYIAAWWELVNWDWANQ 189
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A1C9W8F6_9GAMM (Superoxide dismutase n=16 Tax=Microbulbifer TaxID=48073 RepID=A0A1C9W8F6_9GAMM)

HSP 1 Score: 276 bits (705), Expect = 2.140e-89
Identity = 124/193 (64.25%), Postives = 151/193 (78.24%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANENF 579
            M+ +LPELP+  DAL PHIS ET++YHYGKHH  YV KLN  +   A+ + KTLEE++ ++SGGVFNNAAQ+WNHTFYW  LSP GGGEPTGA++EAI KA+GSFE FK+ F  +A  +FGSGW WLVK  DG V +V T +A+ P+ E    PLLTCDVWEHAYYIDYRN+RP Y+EA+WKLVNW F N+NF
Sbjct:    1 MAHVLPELPYAMDALEPHISQETLEYHYGKHHKTYVDKLNGLLEGTADAD-KTLEEVIKSSSGGVFNNAAQIWNHTFYWNCLSPNGGGEPTGAVEEAINKAFGSFEKFKEEFTNSAVNNFGSGWTWLVKKSDGSVAIVNTSNAATPLTESDQTPLLTCDVWEHAYYIDYRNARPKYMEAFWKLVNWDFVNQNF 192
[Close]
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Match: A0A356T2V4_9DELT (Superoxide dismutase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T2V4_9DELT)

HSP 1 Score: 275 bits (703), Expect = 4.010e-89
Identity = 124/190 (65.26%), Postives = 149/190 (78.42%), Query Frame = 1 
Query:    1 MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELEGKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEKAYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEGLGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFAN 570
            M+  LPELP+ KDALAPHIS ET+++HYGKHH  YV KLN A+  +A L+GK+LE+++ T  GGVFNNAAQVWNHTFYW SLSP GGGEPTG I +AI+K++GSF DFK+ F   A+GHF SGWAW+V + DG + +V  HDA NP+  G   P+LTCDVWEHAYYIDYRN+RP YI AWW LVNW  AN
Sbjct:    1 MAFTLPELPYAKDALAPHISKETLEFHYGKHHQGYVNKLNKAVEDDASLQGKSLEDLIKTQKGGVFNNAAQVWNHTFYWNSLSPNGGGEPTGKIADAIKKSFGSFSDFKEQFSKAASGHFASGWAWVVTSGDG-LDIVDLHDAGNPLTMGK-TPVLTCDVWEHAYYIDYRNARPDYIAAWWNLVNWDHAN 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2902.7913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI17_ECTSI4.300e-12487.50Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2V2G5_9STRA2.300e-9968.91Superoxide dismutase n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZFU3_9STRA9.950e-9769.95Superoxide dismutase n=1 Tax=Tribonema minus TaxID... [more]
W7T7U7_9STRA5.910e-9569.11Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A6V1U4U1_HETAK2.680e-9366.67Superoxide dismutase n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4G4J6_VITBC3.490e-9165.10Superoxide dismutase n=1 Tax=Vitrella brassicaform... [more]
A0A7Y5GYH9_9DELT3.620e-9066.84Superoxide dismutase n=1 Tax=Myxococcales bacteriu... [more]
A0A7C7YMU4_9ARCH5.130e-9066.31Superoxide dismutase n=2 Tax=Archaea TaxID=2157 Re... [more]
A0A1C9W8F6_9GAMM2.140e-8964.25Superoxide dismutase n=16 Tax=Microbulbifer TaxID=... [more]
A0A356T2V4_9DELT4.010e-8965.26Superoxide dismutase n=2 Tax=Myxococcales TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2902contigH-paniculata_contig2902:1159..6587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.7
Seed ortholog evalue6.7e-99
Seed eggNOG ortholog2880.D8LI17
Preferred nameSODB1
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGsCOG0605@1,KOG0876@2759
Ec32 ortholog descriptionManganese/iron superoxide dismutase, N-terminal
Ec32 orthologEc-04_002870.1
EC1.15.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons7
Model size1094
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2902.7913.1prot_H-paniculata_contig2902.7913.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2902 1668..6587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.5361567-UTR-H-paniculata_contig2902:1158..16671622929885.5361567-UTR-H-paniculata_contig2902:1158..1667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2902 1159..1667 -
1691481054.873221-UTR-H-paniculata_contig2902:1158..16671691481054.873221-UTR-H-paniculata_contig2902:1158..1667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2902 1159..1667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.5498307-CDS-H-paniculata_contig2902:1667..17201622929885.5498307-CDS-H-paniculata_contig2902:1667..1720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 1668..1720 -
1691481054.8828795-CDS-H-paniculata_contig2902:1667..17201691481054.8828795-CDS-H-paniculata_contig2902:1667..1720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 1668..1720 -
1622929885.56713-CDS-H-paniculata_contig2902:1998..20531622929885.56713-CDS-H-paniculata_contig2902:1998..2053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 1999..2053 -
1691481054.890282-CDS-H-paniculata_contig2902:1998..20531691481054.890282-CDS-H-paniculata_contig2902:1998..2053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 1999..2053 -
1622929885.5826852-CDS-H-paniculata_contig2902:2461..25301622929885.5826852-CDS-H-paniculata_contig2902:2461..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 2462..2530 -
1691481054.8978627-CDS-H-paniculata_contig2902:2461..25301691481054.8978627-CDS-H-paniculata_contig2902:2461..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 2462..2530 -
1622929885.599201-CDS-H-paniculata_contig2902:3869..40641622929885.599201-CDS-H-paniculata_contig2902:3869..4064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 3870..4064 -
1691481054.9055448-CDS-H-paniculata_contig2902:3869..40641691481054.9055448-CDS-H-paniculata_contig2902:3869..4064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 3870..4064 -
1622929885.6141577-CDS-H-paniculata_contig2902:4259..43691622929885.6141577-CDS-H-paniculata_contig2902:4259..4369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 4260..4369 -
1691481054.913229-CDS-H-paniculata_contig2902:4259..43691691481054.913229-CDS-H-paniculata_contig2902:4259..4369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 4260..4369 -
1622929885.6276343-CDS-H-paniculata_contig2902:4800..48371622929885.6276343-CDS-H-paniculata_contig2902:4800..4837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 4801..4837 -
1691481054.92383-CDS-H-paniculata_contig2902:4800..48371691481054.92383-CDS-H-paniculata_contig2902:4800..4837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 4801..4837 -
1622929885.638939-CDS-H-paniculata_contig2902:6521..65871622929885.638939-CDS-H-paniculata_contig2902:6521..6587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 6522..6587 -
1691481054.9312134-CDS-H-paniculata_contig2902:6521..65871691481054.9312134-CDS-H-paniculata_contig2902:6521..6587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 6522..6587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2902.7913.1

>prot_H-paniculata_contig2902.7913.1 ID=prot_H-paniculata_contig2902.7913.1|Name=mRNA_H-paniculata_contig2902.7913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MSIILPELPWPKDALAPHISAETIDYHYGKHHAAYVTKLNAAISSNAELE
GKTLEEIMATASGGVFNNAAQVWNHTFYWKSLSPQGGGEPTGAIKEAIEK
AYGSFEDFKKAFGATAAGHFGSGWAWLVKTEDGGVKVVGTHDASNPVKEG
LGKPLLTCDVWEHAYYIDYRNSRPGYIEAWWKLVNWSFANENFE*
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mRNA from alignment at H-paniculata_contig2902:1159..6587-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2902.7913.1 ID=mRNA_H-paniculata_contig2902.7913.1|Name=mRNA_H-paniculata_contig2902.7913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5429bp|location=Sequence derived from alignment at H-paniculata_contig2902:1159..6587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTATCATTCTTCCGGAGCTCCCGTGGCCCAAGGATGCTCTTGCTCC
TCATATCAGTGCTGAGGTGAGTACTAATGAAGTCACCCGACCACATTGTA
TTATGGAGGTTAGATCCCGAAGATGTAATGTGAACACCCTAGTTTTCTGA
CTGACTGCTCTGTATGTAAGATGGGAAAGCATGTACGAATCCCTCTGTTC
GGCCCCGTTACTGGACGGCAGAGAACACGTGAAGTGTAGCGGGATGTGAC
TGGCAATGAATCCTGCCAAGGATGCAGCTGTCCGAAGATGAAGAACAGAC
GTCAACTTGCGTCCCCGAATACAACCTGTCACATCAATAGATGTTTTGAG
ATTTACACAAATCGGGGAAGACAGGAAGAGAAGAAGGTTTGAATAAGTGC
CGGACTCACTGTCTACTTTCCTTCCTGTCCTTCTCGCATCCTCACACCCT
CAGAATACAACTGAAGACACCTTGCAATGCGTTCCTTTCAGTCCCTTCTG
CCAATGGTGCAGAAGTTTCATCTACCCACTAAGACGGTGCAATCTGACGT
CCCACGCGTTTCACCTGTACAATTTTTTGAAGTATGTAGCCTAGCATGAC
AATTGTGCGCGGAGGAAGGGGTTAGTTTCCGGATGATGGAGTCGGAGGTG
TTGACGTTACTTACACCGAATAGGTTTGACGATACCCGCTCCACAATTTT
TGTGCATTCGATTCATTCGACATTGCGGGATGAAGTTTTCATCGGTTAGT
GTGGGATCAGTGTACTGAGGCACTTTTCAGTAATTAGAACAAATCGTTAC
AACCCTCTCCGTTTGCGTCTCATGACGCCTTAATGGACTTGTGTGGAATA
TTGATGGAGACCATCTCTTGGTCCACTGATAACTTCCTGTAGAGGAGTCA
AGCTTGGGCTACAGATGATCCTTTCATGGGCCAAGCTACGTTGACTTAAG
TTTTCGTGCCTTTCACCTCAAGTGTATGAGAACGCGTCGCAAGAACCCGG
CATGTCGGAAACCTTCCGTTCAACCCAGGTTCCTCCTTTTTTAGGAGAAT
CTGTTGCGGAAAGTATATTGAAAATACCATCGTGTGTAAGTTGGAATTCT
CCTTAAGGTTTTTTGCCTTGGACTTCTCCAGGTACGTCGGCGAACAATGG
AAATGCTATGGAATAGTCATGTCATGATGTATTATCTTTCGTCAAGGAAG
GGTTTAGGTACCGAATATGCGCCGGGGAAAATCGTTGCAGTTTTTGTGGA
GATGGTTGAAAGTGACGGTTAAATATAATAGTCACTATAATAGTGTGGGA
AACGTTCATGAGAGTGTGTGCAGGATCATGGATTTGTGTGAATTTTTGGG
ATACCGGAGACAGAGGTAATTCGCTTTTAGCGATTACCGCGAAATTGTCA
TAACATCGTACTGGCTGTTCAGCTCGGCAGTTGCGATGTTATGTATGGAG
ACGGGTGGTATAAATGGAATACATTGCACCTTGGTCCTCTGCAGGGCTTG
ATGACTACCCATGGACTGGAGACACGTGATTGAAGTGAACTAGAAGTAAC
AACCACATCGTCAAAGTGGGGAAATATGTAGAACATCTCTAATAATTCGA
GTACAGACGGTGTCTCGCATTCCACCCCTTTCTAGAGCTCATATTTGGTA
GGTGATTACTGGTGCCTTTTCCTGTTGACTGATCTTGTGTTCTGTCTGCT
TCTTTTACCCCTGCTCGGACGCTTACACGGTCATCTCTGTCTGGCAACAG
ACGATCGACTACCACTACGGCAAACACCATGCTGCCTGTGAGTGAACTGT
GTTGCCACTGTAAAGTGGAGACGGGTTGGCCTGAGACGAGTTTGGTGAAT
CAAAGCGAAAGTGAATAGCCAGTATCTTGAACGTGGCTGAATGGGACAGG
GCGAGTACTGATGATTTTTTTGTCAACAAAGCGATGGGTTCATTCACTGG
AGGCGAATGATCTCTCATGACGACCGACGGGTGTTACAGCACTTATCTAG
GTAATGACAGTCATCTGTGAGCAACTTGATAAATTTTCGGCTCTTGTTGG
CAGTACCCCGAATTATTAAAGTATGCTCAGTATTTTTGGGGCAATTTTCC
AGTCAGATAGAGCGTCGAGCATCAGCAGGTGGGCTGTGCTTTCGTGGTAG
TTGACAATCTTGACCCCTCCTTTCCTTGTATCCCTTCTCCGCTTTCGACT
TCCACTGGTCAATTGAAGACGTCACAAAGCTGAATGCAGCGATCTCGTCC
AACGCGGAGCTGGAAGGCAAGACGCTCGAGGAAATCATGGCAACGGCATC
TGGCGGAGTATTCAACAATGCCGCTCAGGTGAAGAAATGGATCACGCCGA
GTTGCAGGCAACATGTCCTTGGTCAAACTAGGTTAAATCAGTTGCTGAAA
CATGACCACAGGACTGCAAAAAATAGCCGAATGAACAAATTCACGCCGGA
GGCAAGAATCTAGAATGACTCCCTATCCAATAAAATATATTCTGATTCGA
TGGTTTCATACTTGCTTCTCAAGGTATGGAATCACACCTTCTACTGGAAG
TCGCTCTCCCCCCAGGGTGGGGGGGAACCCACTGGTGCAATCAAGGAGGC
GATCGAGAAGGCTTACGGATCATTCGAGGATTTCAAGAAGGCATTCGGCG
CTACTGCTGCGGGGCACTTCGGGTCGGGATGGGCGTGGTTGGTGAAGACG
GAGGACGGAGGTGTCAAGGTGCGAAGCACCCCCTGTGACCGTGATGCATG
CGTGCGATAATGGTGCAGAGGCGTTGGGTCCCAACAGTGGGAAGTAGGAG
GGCTGAGAATGGAAGGTTGTCAGGATTATGTATCATGCGCTATACAAATT
ATTTTAGCTGAAATGAGGGATGACTTTGTTGGGAAGATGGAGACGACAAA
AGTTATTGGCCAGATGCACATGAACGGTAGATGCATCTTGATTATATGTC
CAAATGCGATGTGAGTGCAGCGTATTATCTGCCCATGTCGACCAACATCC
AGATTTTGTGGTAGCTTCGAACGCCGAAATTAATGGCGATAATCCACATG
TTCATTTTGCCGAATACCCGACAAAAGAACAATTTTATCCGTTTTTGGTT
CAGGGGCTGTTCAACATTGAACTGTTCGCCGTCAGGTGAAGTCGTGTGGC
CGCTGCAGGTTCGATGCCGAAACACTCGGCATACTGTTCACCGTGCATGA
CACGCTTCGAAGTCTATGACGAATTTTTGCAAGTTTCACGACGGTCATAT
GAAGGGCAAAATACCCGTTGATTATTTTGCCTAAAACCGGAGGCTTCGCC
GTTTAGTTGGTACACTGGCTGCCCATCCATTTTGATCCAGAGCAAGTGTT
GCACCCCGTAATTCTTTCGCTGTGAGGTGGAGTCGTGTGGCCGCTGCAGG
TTCGATGCCGAAACACTCGGCATACTGTTCACCGTGCATGACACGCTTCG
AAGTCTATGACGAATTTTTGCATGTTTCACGACGGTCATATGAAAGGCAA
AATGCCCGTTGATTATTTTGCCCAAAACCCGAGACTTCGCCGTTTAGTTG
GTACACTGGCTGCCCATCCATGTTGATCCAGAGCAAGTGTTGCACCCCGT
AATTCTTTCGCTGTGAGGTGGAGTCGAGTAGTAGCTCGAGGGTCGACTCC
AAAATACTCTGCTTGTCGTCCACCGCACATGTTGGGCCGCGAAGTCTATG
ACGAATTTTTGCAAGTTTCACGACGGTCATATGAACGGCAAAATGCCCTC
GGTTGATTATTTTGCCCAAAACCCGAGACTTCGCCCTTAAAATTAGGATT
TTGACGGCCATGATTTCCATTCCTTTCGTTCAAAACATATAATTGCATGC
ACTGGTGCAACCGTGGGTGTGGATACGGTAGAGTCGAGTAAACGCTCCTC
GAGGTGGCAGTTCACATTGCAGTTATTGCGCAAGGTTCAAATGTGGTGCA
CCAGTTTCACAGTCGAAACTGTGTCATTGTAGGACGGGATGATGAAAGCC
GTCGATTAAATTTGTTTCCATCCCTGACCTTGCATTTCCATGATGTTCTA
TGCGCAGGTGGTGGGCACTCACGATGCATCTAACCCGGTCAAGGAAGGTC
TGGGGAAGCCGCTACTTACCTGCGATGTGAGTTTGACGAATGATGCACTT
GGTCGGTTGATGCTGGTGCCGTGACTCCCTTACATGGACCGTCGGAGAAC
AAGCCCAATGGATATTGAATACGGGTGAAGGGGGGAGAAACACAATCGGG
CGCTCTGGTCCCACTTGACATTCGATGGGTGTGATTATTTTGTAGGTTCA
CTTGAGTCACAGGTCTTGTCAGACCGTGCTAATATTTGTAGTTGTCGGCC
TCGGAACAATGTGTGCAGCTTCAAAAGACAGGAAACCCATATTTTCCCTC
GAGTAAGCAATTTTAATCTCAACGAGGAGGCGATATTAGATTATTGCATA
TGTGTGTGGAATGAATCTGAGAAGAAATTAACATCAACTGTGAATTTCTG
CCTTCGTGATCACCTTGTGTTATTTCCGTCAAAGGTGTGGGAGCACGCGT
ACTACATCGACTACCGCAATTCACGACCGGGCTATATCGGTGAGCGTCTT
ACATTCTATAAACCTTTCCGACTTTCATTCTCACAAGTGTGGATGAACAC
TTGAATACAGCTTCCCTCTGCCAGTAGCGACAAACATCGAAAACGTTCAC
AGAGTGTAATGGTGTAATGAAGTCGAGTCATCATTGGAGGCATGAGAAGT
TTTGTAGTAGTATGTGATTTCGGCGTCTGAACTGTGCTCTTTGCTCGAAA
TTGAAGGAAATCTTCTTACGAATATCTTGCGTCTTCAACATGCTTTTCCT
CGACTTTTTCTGTACAGAGGCGTGGTGGAAGCTGGTGAACTGGTCGTTCG
CCAATGAAAACTTCGAGTAAACACTGATGGTCCTCGTCCACCGCCGAGTT
CAACGTCTACCCGTACTGTCTCCCGTGTACGGGGATTTGGTGGCGTAAAC
TGTGTTGGCTCTTGGAGCGAGAGAACGGTCATGGTTTGTCGCTTCCGACT
GTGTATGAGGAGTACACACGAGACAAATAGAATATAGAATATATTGAACG
AGTCTAAGCCCGAAAGGGTAGGGCACGACTAGAGGGCAACCTTTGCCGAA
GACCAGGACGGAACGCTTCCGAGTGGTAAATACAGAGGGTTTACACTCAG
GGGTGAAAATAAAATAAAACGTATTCCGGTTTTTACCGTGTACATCTCAC
TATGGTGTGTTGATGTCTTCAGCAGTGACGTGAAACAAAGAGTACAAAGG
GACAACAATTTCCGATTGATCATACCAAAATCTATTCATCCCGTGTCAAA
ATGAAACTACTTTGTTTTGATCGATTAATGGCGAAGTAAAATTTCGACAC
CTTGTATCTGTATCACCACATTCTTTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig2902:1159..6587-

>mRNA_H-paniculata_contig2902.7913.1 ID=mRNA_H-paniculata_contig2902.7913.1|Name=mRNA_H-paniculata_contig2902.7913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig2902:1159..6587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTATCATTCTTCCGGAGCTCCCGTGGCCCAAGGATGCTCTTGCTCC
TCATATCAGTGCTGAGATGTCTATCATTCTTCCGGAGCTCCCGTGGCCCA
AGGATGCTCTTGCTCCTCATATCAGTGCTGAGACGATCGACTACCACTAC
GGCAAACACCATGCTGCCTACGATCGACTACCACTACGGCAAACACCATG
CTGCCTACGTCACAAAGCTGAATGCAGCGATCTCGTCCAACGCGGAGCTG
GAAGGCAAGACGCTCGAGGAAATCATGGCAACGGCATCTGGCGGAGTATT
CAACAATGCCGCTCAGACGTCACAAAGCTGAATGCAGCGATCTCGTCCAA
CGCGGAGCTGGAAGGCAAGACGCTCGAGGAAATCATGGCAACGGCATCTG
GCGGAGTATTCAACAATGCCGCTCAGGTATGGAATCACACCTTCTACTGG
AAGTCGCTCTCCCCCCAGGGTGGGGGGGAACCCACTGGTGCAATCAAGGA
GGCGATCGAGAAGGCTTACGGATCATTCGAGGATTTCAAGAAGGCATTCG
GCGCTACTGCTGCGGGGCACTTCGGGTCGGGATGGGCGTGGTTGGTGAAG
ACGGAGGACGGAGGTGTCAAGGTATGGAATCACACCTTCTACTGGAAGTC
GCTCTCCCCCCAGGGTGGGGGGGAACCCACTGGTGCAATCAAGGAGGCGA
TCGAGAAGGCTTACGGATCATTCGAGGATTTCAAGAAGGCATTCGGCGCT
ACTGCTGCGGGGCACTTCGGGTCGGGATGGGCGTGGTTGGTGAAGACGGA
GGACGGAGGTGTCAAGGTGGTGGGCACTCACGATGCATCTAACCCGGTCA
AGGAAGGTCTGGGGAAGCCGCTACTTACCTGCGATGTGGTGGGCACTCAC
GATGCATCTAACCCGGTCAAGGAAGGTCTGGGGAAGCCGCTACTTACCTG
CGATGTGTGGGAGCACGCGTACTACATCGACTACCGCAATTCACGACCGG
GCTATATCGGTGTGGGAGCACGCGTACTACATCGACTACCGCAATTCACG
ACCGGGCTATATCGAGGCGTGGTGGAAGCTGGTGAACTGGTCGTTCGCCA
ATGAAAACTTCGAGTAAAGGCGTGGTGGAAGCTGGTGAACTGGTCGTTCG
CCAATGAAAACTTCGAGTAA
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