mRNA_H-paniculata_contig2900.7906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2900.7906.1
Unique NamemRNA_H-paniculata_contig2900.7906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2900.7906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2900contigH-paniculata_contig2900:1409..3372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_000520.1
Exons2
Model size248
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.9060605-CDS-H-paniculata_contig2900:1408..15491622929884.9060605-CDS-H-paniculata_contig2900:1408..1549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 1409..1549 +
1691481054.6702812-CDS-H-paniculata_contig2900:1408..15491691481054.6702812-CDS-H-paniculata_contig2900:1408..1549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 1409..1549 +
1622929884.9199798-CDS-H-paniculata_contig2900:3267..33721622929884.9199798-CDS-H-paniculata_contig2900:3267..3372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 3268..3372 +
1691481054.680265-CDS-H-paniculata_contig2900:3267..33721691481054.680265-CDS-H-paniculata_contig2900:3267..3372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2900 3268..3372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2900.7906.1prot_H-paniculata_contig2900.7906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2900 1409..3372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2900.7906.1

>prot_H-paniculata_contig2900.7906.1 ID=prot_H-paniculata_contig2900.7906.1|Name=mRNA_H-paniculata_contig2900.7906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
GSVDGGGPLSLERQQTAVGGGGSGDGLAGEGAWVSPAYDMTSVFGLEVYR
VKGEEVGADEQNGHLGHRSSAKRKADVSGPT*
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mRNA from alignment at H-paniculata_contig2900:1409..3372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2900.7906.1 ID=mRNA_H-paniculata_contig2900.7906.1|Name=mRNA_H-paniculata_contig2900.7906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1964bp|location=Sequence derived from alignment at H-paniculata_contig2900:1409..3372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTCCGTGGATGGGGGGGGTCCCTTGAGCCTTGAGCGCCAGCAAACTGC
GGTTGGAGGTGGGGGAAGTGGGGATGGTTTGGCAGGAGAGGGTGCATGGG
TGTCGCCGGCATACGACATGACGAGCGTTTTTGGGTTGGAAGTGAGTAGA
CCTCCTTACCGTGGCCGATACCCCTAACTGCAAGCTCAGCCCTTAGCCGC
CCCATTGCCGGAACATTTAATCCCAAAGGTAGCTCTGACCCTACAGTATT
TTCTTAGGATGTGACACTGGCGTCTAGCTCCGAGCCCTGGCTGGCACTAC
CGTCATTTTGGTGGGTGAAGGTGTGAGTGCTGTGCTAAGATCTTGAGAAC
GGGGAGATTGACACAGGACATAAATGACATGGTATCTCAAACTACTGCAT
GGTAGCAGTGAAAGTCGCGGTGTTTGGTATGTTGGTCGATAATGATACCA
TTGTTTCTTCTCGGTATCACTTTTTTATATTTTGTGCTGCGCACCGTGAA
GCCACCGCCACCATCGTAGTTATTCATCCTTTCTCTACACTGTTCCCCGA
AAAGTAACGCTTGTGTCGGTGTGCAGGGTGCTGAAAATTAGCAAACAAGG
GAGACAGAAAAAGCTATTTACAACCACAAATACGATACCGATAAAAAAAA
TATCGAGAAAGGGGGATTTTGAGAAGGGCTAAGACAGCGGTCCTGTGAAT
GTTGAGAGATGGTCGACCGCCGCCATCGACTCGAAACTCTCCTACTGTAC
GCGCACGTCATTGTCTACTCGCAGTAAGCACAGCATCAAACTTGTAACTT
GATCGCAACACTGAACAGAACGGCGGCTCTAACGTCGACCCTCTGCCTGC
AACATGGCGCACGTCTTCGTAAAGAACAAGCCTGGATCAATAACTTCCGA
TACCTCACCTGACCCATGCACCGATTGGCACACGGGTTGATTTCGTAGAG
GTTTGTGCCGAGTATTACCGCCGTGCGAATACTGGCGTAGACGATTGGGT
GACACCTGCTGTACTGTAGAATTACATCGTCTCTGCTGTCAAGGATGTTA
TCCAAGTTTTCGAGTATTCGAGTGTACTTGGTGAACACGGTGATCATTCT
GTACATGGACAATTGTTGTACTTCGAAGTATTAATATTAATAGTTGCAAG
TTTCAATTCTGATTATGCACCAGACACTGTTCGCTTTTTTTTTTTTTTAT
TTGACAAAATGAATAAAAACCAAACTTTGTCTGGAATAATCAGAAGAGAC
CAATCAGAATAGATCAATCAGAATAGATCAATCAGAATTGCGCGCCCACT
TCCACACTACCCCACCGGACCCTAATCCTCGTCTGCAAAAACGACGAAAA
ACAATTCATATGCAACAACATAATTACGGGAATAGGGAGCTGCCACTGTC
CAGACAGCCAGTCCAGCGTTGGCATAGTTTACGCATACCCACTGCAACGC
TCGATATATATTTTGTCATATTCATTTTCGCTCTGACACAGCCTCTTTAA
ACGGCGTCCGAAGTATTGAACTTCTCGTATTGCCTACCCATTTCAGTGGT
CATTAGATTCGCTCGCTGTGTCTCTTACTTTTATTGATCTTAACAGTACC
TCAGGTATAGTTCGATGTGCGGTTGTTCAGATACGCATACAATCATATAT
ATCTTTCGAAGAGAGCAAAGGCGGGGTACTTCAGTTCGAGGGGAAATGCA
GAGTGCAGTGGGAGGGTAACAATGTGTACAAATAGTAACTCAGCAAAGTA
TGTATGGCGTACGTAGCTTGCACGTGATCGCCTCGTGCCCCGCTCGCGTC
GGGCACGAGGCCTTTCTTGATAGATCGGACACGCCATTTTGCGTCCACCA
AAATCAAAGGTTTATCGAGTAAAGGGCGAGGAAGTCGGAGCCGACGAGCA
GAATGGACACCTTGGCCATAGGAGCTCGGCGAAACGCAAAGCAGACGTGA
GTGGACCGACCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2900:1409..3372+

>mRNA_H-paniculata_contig2900.7906.1 ID=mRNA_H-paniculata_contig2900.7906.1|Name=mRNA_H-paniculata_contig2900.7906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig2900:1409..3372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTCCGTGGATGGGGGGGGTCCCTTGAGCCTTGAGCGCCAGCAAACTGC
GGTTGGAGGTGGGGGAAGTGGGGATGGTTTGGCAGGAGAGGGTGCATGGG
TGTCGCCGGCATACGACATGACGAGCGTTTTTGGGTTGGAAGGGTCCGTG
GATGGGGGGGGTCCCTTGAGCCTTGAGCGCCAGCAAACTGCGGTTGGAGG
TGGGGGAAGTGGGGATGGTTTGGCAGGAGAGGGTGCATGGGTGTCGCCGG
CATACGACATGACGAGCGTTTTTGGGTTGGAAGTTTATCGAGTAAAGGGC
GAGGAAGTCGGAGCCGACGAGCAGAATGGACACCTTGGCCATAGGAGCTC
GGCGAAACGCAAAGCAGACGTGAGTGGACCGACCTGAGTTTATCGAGTAA
AGGGCGAGGAAGTCGGAGCCGACGAGCAGAATGGACACCTTGGCCATAGG
AGCTCGGCGAAACGCAAAGCAGACGTGAGTGGACCGACCTGA
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