prot_H-paniculata_contig2898.7895.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2898.7895.1
Unique Nameprot_H-paniculata_contig2898.7895.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length783
Homology
BLAST of mRNA_H-paniculata_contig2898.7895.1 vs. uniprot
Match: A0A6H5JGR2_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 5.980e-44
Identity = 218/673 (32.39%), Postives = 270/673 (40.12%), Query Frame = 0
Query:    5 NRRVVHELAVHYGLVTQSFDLEPKRYVSAIKQKGCKIPSRLLSVAARDPTYKGTDEAIHVRPGGGGRKYLIISTCPLGR---IFGGSNSTGGN--FDWPPLN-----------REQSIFTVGHMYVLSSPP-------------RLALFIPPHNLAFLHQAVVSTQESANRDTALQKAIAVALEMSPSPPRTRTVTSISSAKPPAAMATTL----SSSNFTAVQP---GSTCTSRSQPTIASSQKGGSEMLNASATTSGVAGTSVASAAAPGPSPESLLVLHSVQAGLGR-EAILERIRTLVPTRTVVRVRQATSLEASAAGLAQTSGA-------LVAEFRSELYARRAWEKIEKDAEQLLAAARVTRTEYHAPFRACLFPAAAASSSIEASARVSGARALRANLKPPDDVTERIGDDDEVRDNWDSSDDDDGAEEGVSVXXXXXXXXXXXEKKSGDEGVEKLDVAAEAVLESLYGAEASDAGQERLVTEGSTEDPPDTAEENGEPAAGGADESKLCQGKCGGGSHEARQCGRLEEQEAVEEKALLEGKSAQDGDFLESETRAEDDGRAVGLIQTPEEDSSAPKWIGGVTIGSIPTGGGSSSLQWRAASGSTKRDGTSDHANTDAGGGAASAAGPAPPRRHSKWGNSAIKGRLARPSDGRATTVEQEANERQ 633
            +R+  HELA HYGLVTQS+DLEPKRYVS IKQKGC++P+RLLS AA+DP+Y GTDE      GG        +T P  R   + G +++  G    D PP             R  ++ ++     L+  P                                    SA   TA     A A  +   P R          K  AA A  L    +S++     P   GS   S S P    S   G+   +        AG   A+A  P  +PE LLV HSVQAGLG  +A+L  +RTLVP RTVV VR AT+ E SAAG+    G        L+ EF S L ARRAWEK+EK+AEQL+AAARVTRT++HAPFRA L+P+A  +        V G  +L                 D VRDNWD S                          S +E  E + VA +   +                                    GG DE++  +      SHE     R +E E  EEK  L  +   D D   S         A                          TG G                                       +RHSKWGNSAIKGRL+RPSDGRATTVEQEA  RQ
Sbjct:  751 DRKAAHELAAHYGLVTQSYDLEPKRYVSVIKQKGCRLPTRLLSSAAQDPSYTGTDEVPAAEGGGAAPALERTTTNPNPRATSLLGPASTPSGGKGSDHPPPGVTPSLGXXXXPRTSTVTSISSADPLAVDPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARPATATPAPAAKAATILADPFRQDR-----DEKEDAAAAEELKGRETSNDSVPGNPKKSGSASGSGSLPEAVKSAAAGTPSGHGGRNRGNGAGPGGAAAVGP-DNPECLLVFHSVQAGLGGGDAVLASVRTLVPARTVVGVRPATAKEVSAAGVQGHRGGGGSGGSTLIMEFSSALNARRAWEKVEKEAEQLVAAARVTRTDHHAPFRAKLYPSAPPADD----GGVGGCGSLV----------------DVVRDNWDDS--------------------------SEEEDEEPVGVARDGARDE-----------------------------------GGDDETERKEEPRLQDSHEDED--RAQEHEGKEEK--LAPRETGDDDSTASP--------AXXXXXXXXXXXXXXXXXXXXXXXXXXTGTG---------------------------------------KRHSKWGNSAIKGRLSRPSDGRATTVEQEAAARQ 1285          
BLAST of mRNA_H-paniculata_contig2898.7895.1 vs. uniprot
Match: D8LKN7_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN7_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 8.180e-36
Identity = 146/404 (36.14%), Postives = 184/404 (45.54%), Query Frame = 0
Query:    5 NRRVVHELAVHYGLVTQSFDLEPKRYVSAIKQKGCKIPSRLLSVAARDPTYKGTDEAIHVRPGGGG--RKYLIISTC-----------PLGRIFGGSNSTGGNFDWPPLNREQSIFTVGHMYVLSSPPRLALFIPPHNLAFLH------------------------------------------QAVVSTQESANRDTALQKAIAVALEMSPSPPRTRTVTSISSAKPPAAMATTLSSSNFTAVQPGSTCTSRSQPTIASSQKGGSEMLNASATTSGVAGTSVASAAAPGP-SPESLLVLHSVQAGLGR-EAILERIRTLVPTRTVVRVRQATSLEASAAGL-------AQTSGALVAEFRSELYARRAWEKIEKDAEQLLAAARVTRTEYHAPFRACLFPAA 344
            +R+  HELA HYGLVTQS+DLEPKRYVS IKQKGC++P+RLLS AARDP+Y GTDE      GG    +  L  +T            P     GG  S                        +SS   LA  + P                                                 +A     E + +D   ++  A A E    P  +         KP  + + + S S   AV+  +          A S  GG    N         G     AAA GP +PE LLV HSV+AGLG  +A+L  +RTLVP RTVV VR AT+ E S AG+       +     LV EF S L ARRAWE++EK+AEQL+AAARVTRT++HAPFRA L+P+A
Sbjct:  696 DRKAAHELAAHYGLVTQSYDLEPKRYVSVIKQKGCRLPTRLLSSAARDPSYTGTDEVPATEGGGAAPVKPALERTTTNPNPRATSLLGPASTPSGGKGSDHPXXXXXXXXXXXXXXXXXXXXSISSADPLA--VDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVKAATVLAEPSRQDRDEKEDAAAAEEELKGPENSNDSVP---GKPKKSGSASGSGSLPEAVKSAAG---------APSGDGGRNRGN---------GAGPGGAAAVGPDNPECLLVFHSVKAGLGGGDAVLASVRTLVPARTVVGVRPATATEVSVAGVQGHRGGGSSVGSTLVMEFSSALNARRAWEEVEKEAEQLVAAARVTRTDHHAPFRAKLYPSA 1076          
BLAST of mRNA_H-paniculata_contig2898.7895.1 vs. uniprot
Match: A0A836C9D8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9D8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.810e-6
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    1 MLAENRRVVHELAVHYGLVTQSFDLEPKRYVSAIKQKGCKIPSRLLSVAARDPTYK 56
            M  E RR  HELA   GL T S+D EPKRYV   ++ G ++PS LLS AARDP Y+
Sbjct:  547 MPRERRRCAHELAEACGLGTISYDAEPKRYVCVQRRAGARLPSPLLSQAARDPRYR 602          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2898.7895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGR2_9PHAE5.980e-4432.39RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
D8LKN7_ECTSI8.180e-3636.14RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A836C9D8_9STRA5.810e-655.36RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 622..662
IPR036867R3H domain superfamilyGENE3D3.30.1370.50coord: 1..44
e-value: 5.1E-5
score: 25.1
IPR036867R3H domain superfamilySUPERFAMILY82708R3H domaincoord: 4..54
IPR001374R3H domainPFAMPF01424R3Hcoord: 3..32
e-value: 1.3E-7
score: 31.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2898contigH-paniculata_contig2898:1145..11713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2898.7895.1mRNA_H-paniculata_contig2898.7895.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2898 1055..12104 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2898.7895.1 ID=prot_H-paniculata_contig2898.7895.1|Name=mRNA_H-paniculata_contig2898.7895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=783bp
MLAENRRVVHELAVHYGLVTQSFDLEPKRYVSAIKQKGCKIPSRLLSVAA
RDPTYKGTDEAIHVRPGGGGRKYLIISTCPLGRIFGGSNSTGGNFDWPPL
NREQSIFTVGHMYVLSSPPRLALFIPPHNLAFLHQAVVSTQESANRDTAL
QKAIAVALEMSPSPPRTRTVTSISSAKPPAAMATTLSSSNFTAVQPGSTC
TSRSQPTIASSQKGGSEMLNASATTSGVAGTSVASAAAPGPSPESLLVLH
SVQAGLGREAILERIRTLVPTRTVVRVRQATSLEASAAGLAQTSGALVAE
FRSELYARRAWEKIEKDAEQLLAAARVTRTEYHAPFRACLFPAAAASSSI
EASARVSGARALRANLKPPDDVTERIGDDDEVRDNWDSSDDDDGAEEGVS
VKDNWDSSDDEEEKKSGDEGVEKLDVAAEAVLESLYGAEASDAGQERLVT
EGSTEDPPDTAEENGEPAAGGADESKLCQGKCGGGSHEARQCGRLEEQEA
VEEKALLEGKSAQDGDFLESETRAEDDGRAVGLIQTPEEDSSAPKWIGGV
TIGSIPTGGGSSSLQWRAASGSTKRDGTSDHANTDAGGGAASAAGPAPPR
RHSKWGNSAIKGRLARPSDGRATTVEQEANERQEKIEKLRRLEELRRETR
KQRDQAKRAERMDAGKLDSHSFMWENLGESSSSSGEEGGDNDEESKDAAS
TGARGDLGEGPPQPLDKAPWEIEHRDHALESERCNEQGVRGWDCGVCTFW
NEGIVDSGVGRPRCAMCDAEGPSDASSPWVTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036867R3H_dom_sf
IPR001374R3H_dom