prot_H-paniculata_contig28901.7885.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28901.7885.1
Unique Nameprot_H-paniculata_contig28901.7885.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length73
Homology
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: D8LD58_ECTSI (ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD58_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.930e-33
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GDA+VAF+RKDIF+IK +IES+T HKCCV+YG LPQETRAHQARLFN+  TGYDVLVASDA+GMGLNLNI R
Sbjct:    4 GDAVVAFSRKDIFSIKKEIESKTPHKCCVIYGSLPQETRAHQARLFNSEDTGYDVLVASDAVGMGLNLNIRR 75          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A1E7FUI6_9STRA (RNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUI6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.900e-28
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD IVAF+R DIF IK +IES TNHKCCV+YG+LP +TRA QAR FN P +GYD+LVASDAIGMGLNLNI R
Sbjct: 1147 GDCIVAFSRNDIFAIKREIESMTNHKCCVIYGKLPPQTRADQARRFNDPDSGYDILVASDAIGMGLNLNIKR 1218          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: D8QYP9_SELML (RNA helicase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QYP9_SELML)

HSP 1 Score: 114 bits (286), Expect = 4.290e-28
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD +VAF+RK+IF +K +IE RT HKCCVVYG LP ETR  QA+LFN P +GYDVLVASDAIGMGLNLNI R
Sbjct:  287 GDCVVAFSRKEIFQVKLEIEQRTKHKCCVVYGALPPETRTQQAKLFNDPSSGYDVLVASDAIGMGLNLNIRR 358          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A9SYU6_PHYPA (RNA helicase (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SYU6_PHYPA)

HSP 1 Score: 112 bits (280), Expect = 2.710e-27
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD IVAF+RKDIF +K ++E  TN KCCVVYG LP ETR  QA+LFN P +GYDVLVASDA+GMGLNLNI R
Sbjct:  264 GDCIVAFSRKDIFDVKREVELATNQKCCVVYGALPPETRTQQAKLFNDPNSGYDVLVASDAVGMGLNLNIRR 335          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A2K1JW62_PHYPA (RNA helicase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JW62_PHYPA)

HSP 1 Score: 112 bits (280), Expect = 3.110e-27
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD IVAF+RKDIF +K ++E  TN KCCVVYG LP ETR  QA+LFN P +GYDVLVASDA+GMGLNLNI R
Sbjct:  625 GDCIVAFSRKDIFDVKREVELATNQKCCVVYGALPPETRTQQAKLFNDPNSGYDVLVASDAVGMGLNLNIRR 696          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A448Z7S0_9STRA (RNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7S0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.120e-27
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD +VAF+R DIF IK +IES T+H+CCV+YG+LP +TRA QAR FN P +GYDVLVASDAIGMGLNLNI R
Sbjct:  787 GDCVVAFSRNDIFAIKREIESLTDHRCCVIYGKLPPQTRADQARRFNDPDSGYDVLVASDAIGMGLNLNIKR 858          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A7S2KFL4_9STRA (RNA helicase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFL4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.400e-27
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD +V F RKDIF IK +IES TN +CCVVYG LP ETRA QARLFN P +G+DVLVASDAIGMGLNLNI R
Sbjct:  538 GDCVVCFNRKDIFAIKREIESSTNLRCCVVYGALPPETRAAQARLFNDPDSGFDVLVASDAIGMGLNLNIKR 609          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A1Y1I4Y5_KLENI (RNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4Y5_KLENI)

HSP 1 Score: 111 bits (278), Expect = 5.810e-27
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD +VAF+RK+IF IK +IE+R  HKCCV+YG LP ETR  QARLFN P +GY+VLVASDAIGMGLNLNI R
Sbjct:  833 GDCVVAFSRKEIFQIKDEIEARGKHKCCVIYGALPPETRRQQARLFNDPDSGYNVLVASDAIGMGLNLNIRR 904          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A7S2R202_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R202_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.300e-27
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD ++AF R DIF IK +IE+ T HKCCV+YG LP + RA QAR FN P + YDVLVASDAIGMGLNLNI R
Sbjct:   42 GDCVIAFARNDIFAIKREIENTTPHKCCVIYGSLPPQIRAEQARRFNDPDSDYDVLVASDAIGMGLNLNIRR 113          
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Match: A0A8K1CEJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEJ7_PYTOL)

HSP 1 Score: 110 bits (276), Expect = 1.070e-26
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 0
Query:    1 GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPGTGYDVLVASDAIGMGLNLNIGR 72
            GD +VAF+R+DIF IK  IE +T  KCC++YGQLP ETR+ QARLFN P   Y++LVASDA+GMGLNLNIGR
Sbjct:  381 GDCVVAFSRRDIFQIKRDIEVKTGQKCCIIYGQLPPETRSQQARLFNAPNNDYNILVASDAVGMGLNLNIGR 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28901.7885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD58_ECTSI2.930e-3380.56ATP-dependent RNA and DNA helicase, putative n=1 T... [more]
A0A1E7FUI6_9STRA1.900e-2875.00RNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]
D8QYP9_SELML4.290e-2873.61RNA helicase n=4 Tax=Selaginella moellendorffii Ta... [more]
A9SYU6_PHYPA2.710e-2772.22RNA helicase (Fragment) n=1 Tax=Physcomitrium pate... [more]
A0A2K1JW62_PHYPA3.110e-2772.22RNA helicase n=1 Tax=Physcomitrium patens TaxID=32... [more]
A0A448Z7S0_9STRA3.120e-2772.22RNA helicase n=1 Tax=Pseudo-nitzschia multistriata... [more]
A0A7S2KFL4_9STRA5.400e-2775.00RNA helicase (Fragment) n=1 Tax=Leptocylindrus dan... [more]
A0A1Y1I4Y5_KLENI5.810e-2772.22RNA helicase n=1 Tax=Klebsormidium nitens TaxID=10... [more]
A0A7S2R202_9STRA6.300e-2768.06Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A8K1CEJ7_PYTOL1.070e-2668.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..72
e-value: 2.7E-25
score: 90.4
NoneNo IPR availablePANTHERPTHR12131:SF1ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIALcoord: 1..72
NoneNo IPR availablePANTHERPTHR12131ATP-DEPENDENT RNA AND DNA HELICASEcoord: 1..72
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 4..68
e-value: 8.4E-9
score: 35.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28901contigH-paniculata_contig28901:962..2659 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28901.7885.1mRNA_H-paniculata_contig28901.7885.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28901 962..2659 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28901.7885.1 ID=prot_H-paniculata_contig28901.7885.1|Name=mRNA_H-paniculata_contig28901.7885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
GDAIVAFTRKDIFTIKSQIESRTNHKCCVVYGQLPQETRAHQARLFNTPG
TGYDVLVASDAIGMGLNLNIGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase