mRNA_H-paniculata_contig11232.788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11232.788.1
Unique NamemRNA_H-paniculata_contig11232.788.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11232.788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11232contigH-paniculata_contig11232:5549..6211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11232.788.1prot_H-paniculata_contig11232.788.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11232 5806..6153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.1683664-UTR-H-paniculata_contig11232:5548..58051622928827.1683664-UTR-H-paniculata_contig11232:5548..5805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11232 5549..5805 +
1691480636.1641526-UTR-H-paniculata_contig11232:5548..58051691480636.1641526-UTR-H-paniculata_contig11232:5548..5805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11232 5549..5805 +
1622928827.2101815-UTR-H-paniculata_contig11232:6153..62111622928827.2101815-UTR-H-paniculata_contig11232:6153..6211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11232 6154..6211 +
1691480636.1833382-UTR-H-paniculata_contig11232:6153..62111691480636.1833382-UTR-H-paniculata_contig11232:6153..6211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11232 6154..6211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.1932397-CDS-H-paniculata_contig11232:5805..61531622928827.1932397-CDS-H-paniculata_contig11232:5805..6153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11232 5806..6153 +
1691480636.175053-CDS-H-paniculata_contig11232:5805..61531691480636.175053-CDS-H-paniculata_contig11232:5805..6153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11232 5806..6153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11232.788.1

>prot_H-paniculata_contig11232.788.1 ID=prot_H-paniculata_contig11232.788.1|Name=mRNA_H-paniculata_contig11232.788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MLPPSLHPRNNLTDYPRIRNVLRGTPRTIRNKNTRHRFSLRYVQQRSAWR
GWMEGGGQRGGFPPYPRNLMCPTTCLSSVERPAHNRGARMDKNIYQQCTV
YLLPLHLIFSTATII*
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mRNA from alignment at H-paniculata_contig11232:5549..6211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11232.788.1 ID=mRNA_H-paniculata_contig11232.788.1|Name=mRNA_H-paniculata_contig11232.788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=663bp|location=Sequence derived from alignment at H-paniculata_contig11232:5549..6211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTCCCCTCTTGCCCCCCGAAAATACGTCGCCAAAACATCCACAGGGA
GGGTAGGTACAGGGAAGGCATTGGACGGTCAATAAACACTAATTATTTAC
AGCGACCATTGCGAGATAAAAAGAGGGAGTGAAACCACCAATGATTCGCT
TTTCTTAGCTCAAAATAGGATGAAGATTGACGCCGTAGACCTGTCTGTCT
ACAGAGTTGCGGCGCATGTGCTAATTTTCATTTCCCATCCGCAGAGGTCG
CCGAGTCATGTTACCACCATCATTGCACCCAAGGAACAATTTGACAGACT
ACCCACGAATACGCAACGTTCTACGAGGAACGCCACGAACCATCAGAAAT
AAAAACACCCGCCACCGTTTTTCTTTACGGTATGTACAACAACGTAGCGC
GTGGCGGGGTTGGATGGAAGGAGGGGGGCAGAGGGGAGGGTTCCCTCCTT
ACCCACGAAATCTAATGTGCCCTACCACCTGCCTTTCAAGTGTAGAACGA
CCCGCACACAACAGAGGGGCGCGGATGGACAAAAACATATATCAACAGTG
TACTGTCTATTTACTGCCCCTGCACCTCATTTTTTCGACCGCCACTATAA
TATGAAAAACAAGACAAAAACAAGTCTGCCCACCGTCTCACTCACCCTCC
TGTAAAGGCTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig11232:5549..6211+

>mRNA_H-paniculata_contig11232.788.1 ID=mRNA_H-paniculata_contig11232.788.1|Name=mRNA_H-paniculata_contig11232.788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig11232:5549..6211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACCACCATCATTGCACCCAAGGAACAATTTGACAGACTACCCACG
AATACGCAACGTTCTACGAGGAACGCCACGAACCATCAGAAATAAAAACA
CCCGCCACCGTTTTTCTTTACGGTATGTACAACAACGTAGCGCGTGGCGG
GGTTGGATGGAAGGAGGGGGGCAGAGGGGAGGGTTCCCTCCTTACCCACG
AAATCTAATGTGCCCTACCACCTGCCTTTCAAGTGTAGAACGACCCGCAC
ACAACAGAGGGGCGCGGATGGACAAAAACATATATCAACAGTGTACTGTC
TATTTACTGCCCCTGCACCTCATTTTTTCGACCGCCACTATAATATGAAT
GTTACCACCATCATTGCACCCAAGGAACAATTTGACAGACTACCCACGAA
TACGCAACGTTCTACGAGGAACGCCACGAACCATCAGAAATAAAAACACC
CGCCACCGTTTTTCTTTACGGTATGTACAACAACGTAGCGCGTGGCGGGG
TTGGATGGAAGGAGGGGGGCAGAGGGGAGGGTTCCCTCCTTACCCACGAA
ATCTAATGTGCCCTACCACCTGCCTTTCAAGTGTAGAACGACCCGCACAC
AACAGAGGGGCGCGGATGGACAAAAACATATATCAACAGTGTACTGTCTA
TTTACTGCCCCTGCACCTCATTTTTTCGACCGCCACTATAATATGA
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