mRNA_H-paniculata_contig11231.787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11231.787.1
Unique NamemRNA_H-paniculata_contig11231.787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11231.787.1 vs. uniprot
Match: A0A6H5K077_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K077_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.500e-41
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 LREEEACMLAEQQTETEKLYEERAMRLESLLQEWKSKYAALRRRFVLETEGFRRDADEIGRRFERIRAGPPGGRPPISSRSGSSARLAVERAIY 282
            LR++E CML EQ+ E E+LYE RA+RLESLL+EWK K+AALRRRF LETEGFRRDAD IGRRFERIRAGPPGGRP ISSRSGSSARLAVERA +
Sbjct:  137 LRKDEVCMLREQRAEAEELYEARAVRLESLLEEWKGKHAALRRRFSLETEGFRRDADNIGRRFERIRAGPPGGRPAISSRSGSSARLAVERAFH 230
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BLAST of mRNA_H-paniculata_contig11231.787.1 vs. uniprot
Match: D8LSK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK9_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.820e-39
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 LREEEACMLAEQQTETEKLYEERAMRLESLLQEWKSKYAALRRRFVLETEGFRRDADEIGRRFERIRAGPPGGRPPISSRSGSSARLAVERAIY 282
            LR++E CML EQ+ E E+LYE RA+RLESLL+EWK K+AALRRRF LETEGFRRDAD IGRRFERIRAGPPGGRP ISSRSGSSARLAVERA Y
Sbjct:  385 LRKDEVCMLREQRAEAEELYEARAVRLESLLEEWKGKHAALRRRFSLETEGFRRDADNIGRRFERIRAGPPGGRPAISSRSGSSARLAVERAFY 478
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11231.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K077_9PHAE7.500e-4180.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK9_ECTSI1.820e-3981.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11231contigH-paniculata_contig11231:6984..8191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002010.1
Exons2
Model size288
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11231.787.1prot_H-paniculata_contig11231.787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11231 6984..8170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.082568-CDS-H-paniculata_contig11231:6983..70891622928827.082568-CDS-H-paniculata_contig11231:6983..7089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11231 6984..7089 -
1691480636.1405997-CDS-H-paniculata_contig11231:6983..70891691480636.1405997-CDS-H-paniculata_contig11231:6983..7089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11231 6984..7089 -
1622928827.0976784-CDS-H-paniculata_contig11231:8009..81701622928827.0976784-CDS-H-paniculata_contig11231:8009..8170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11231 8010..8170 -
1691480636.1486847-CDS-H-paniculata_contig11231:8009..81701691480636.1486847-CDS-H-paniculata_contig11231:8009..8170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11231 8010..8170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.1126902-UTR-H-paniculata_contig11231:8170..81911622928827.1126902-UTR-H-paniculata_contig11231:8170..8191Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11231 8171..8191 -
1691480636.1559923-UTR-H-paniculata_contig11231:8170..81911691480636.1559923-UTR-H-paniculata_contig11231:8170..8191Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11231 8171..8191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11231.787.1

>prot_H-paniculata_contig11231.787.1 ID=prot_H-paniculata_contig11231.787.1|Name=mRNA_H-paniculata_contig11231.787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MLAEQQTETEKLYEERAMRLESLLQEWKSKYAALRRRFVLETEGFRRDAD
EIGRRFERIRAGPPGGRPPISSRSGSSARLAVERAIYR*
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mRNA from alignment at H-paniculata_contig11231:6984..8191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11231.787.1 ID=mRNA_H-paniculata_contig11231.787.1|Name=mRNA_H-paniculata_contig11231.787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1208bp|location=Sequence derived from alignment at H-paniculata_contig11231:6984..8191- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGAGAGGAGGAGGCATGTATGCTAGCAGAGCAGCAGACCGAGACAGA
GAAGCTTTACGAGGAACGAGCGATGCGACTTGAAAGTCTGCTCCAAGAAT
GGAAATCCAAGTACGCGGCTTTGCGTCGGAGATTCGTACTGGAGACAGAG
GGATTTCGACGAGATGCCGACGAGATTGGAAGGTGCGAGGAACACCGGGG
GCGAGGCGGATGGATGCACCTATAAGCGTCACCCATGTCGTTGCATGCTG
CCTCACGAGCGTACCCTGGTTTACACGAGATAAATAGATATTATAGCCGT
GATTTTGGCCGTATGTGAATCGGTAAACCCGTACTCAAAAACGTCGGAAA
GTATGAACTGTCGGCTTGACTCATGATCGTTAGAATGTTGGCAAATGGGA
CTCAATTAATGCTCTTCACAATTCAGACAGCGAATCGTGCAGTTATTATC
GTTGAACGCATTTAAACACATGTCGGGAATTATCCAGTTATGGTAACCTA
GTGTAAGGGCATACTCAAGCCCGGGCAGTCCGTCTTTTGCCCTTGTCCTG
CGCACGAAGGCTCGCTGCGCTTGCCAAGTGAACATCCATTTTGCAGAAAC
GAGCTCAGTACAAATTTGAAGTACGATTCCAAGAGAATGTGGACAAACAC
CACCTTGTCGCATTGTATAGTGGGGATTTGTGTACAGGTCTGCGTGATTC
GTTCCAAATGACATTACTGAAACATTAATAGGTTAACATGCGTAGGTATA
CATACCGGTGCACCTAAAATAGTTGTCTTCATCTACCACAGCCCTCAGGT
TCGTGCTTGTTACAATATCACCACCCACCTACAAAAATAGCTACAGAACT
ATTCTTTTTCCAGCACCTGGGTTGCGGGCGTCATCTCGTTGCTGTTTCCA
TCCTGTTCAATAGTGGCTTGCCGTAATGTTGTAGATCAAACTGGGTGCAA
TGTCTAACCCCCACCTACCCTTCTGGCCGCTGATTACCTGGCATAGTTTT
TGTGTCGACGTTGTAGCGATGTGAGGTCTATCGTCATGTATAGCATATTT
CACCGTAAGTGCACCCACTCTCCTAACCTATCCCCTCTTTTTTCCCCTCC
AGGCGCTTCGAGCGCATTCGCGCAGGCCCTCCAGGCGGCCGACCGCCTAT
TTCAAGCAGGAGCGGATCGAGCGCTAGACTGGCTGTCGAACGGGCTATCT
ATCGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11231:6984..8191-

>mRNA_H-paniculata_contig11231.787.1 ID=mRNA_H-paniculata_contig11231.787.1|Name=mRNA_H-paniculata_contig11231.787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig11231:6984..8191- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGCAGAGCAGCAGACCGAGACAGAGAAGCTTTACGAGGAACGAGC
GATGCGACTTGAAAGTCTGCTCCAAGAATGGAAATCCAAGTACGCGGCTT
TGCGTCGGAGATTCGTACTGGAGACAGAGGGATTTCGACGAGATGCCGAC
GAGATTGGAAGATGCTAGCAGAGCAGCAGACCGAGACAGAGAAGCTTTAC
GAGGAACGAGCGATGCGACTTGAAAGTCTGCTCCAAGAATGGAAATCCAA
GTACGCGGCTTTGCGTCGGAGATTCGTACTGGAGACAGAGGGATTTCGAC
GAGATGCCGACGAGATTGGAAGGCGCTTCGAGCGCATTCGCGCAGGCCCT
CCAGGCGGCCGACCGCCTATTTCAAGCAGGAGCGGATCGAGCGCTAGACT
GGCTGTCGAACGGGCTATCTATCGTTAAGCGCTTCGAGCGCATTCGCGCA
GGCCCTCCAGGCGGCCGACCGCCTATTTCAAGCAGGAGCGGATCGAGCGC
TAGACTGGCTGTCGAACGGGCTATCTATCGTTAA
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