mRNA_H-paniculata_contig11230.786.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11230.786.1
Unique NamemRNA_H-paniculata_contig11230.786.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A7S3ZU99_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZU99_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.170e-14
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRYG 123
            AYSTQSDKVINSGEGGFI T DDE+AA+ I+LSG YERRYG
Sbjct:  228 AYSTQSDKVINSGEGGFITTDDDEIAAKIIYLSGCYERRYG 268
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A7S4E6V5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6V5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.050e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRYG 123
            AYSTQSDKVINSGEGGF+ T DDE+AA+ I+LSG YERRYG
Sbjct:  225 AYSTQSDKVINSGEGGFVTTDDDEIAAKMIYLSGCYERRYG 265
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A8J2WEJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEJ6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.270e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRYG 123
            AYSTQSDKVINSGEGGF+ T DDE+AA+ I+LSG YERRYG
Sbjct:  161 AYSTQSDKVINSGEGGFVTTDDDEIAAKMIYLSGCYERRYG 201
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A6H5K4I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.390e-13
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRY 120
            A+STQSDKVINSGEGGF+ TSDDE+AA+AI+LSGAYE RY
Sbjct:  131 AFSTQSDKVINSGEGGFVTTSDDEMAAKAIYLSGAYEGRY 170
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: K8ECV9_9CHLO (Aminotransferase, DegT/DnrJ/EryC1/StrS family protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ECV9_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 8.830e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRY 120
            AYSTQSDKVINSGEGGFI T DD++AAR +++SG YERRY
Sbjct:  294 AYSTQSDKVINSGEGGFITTDDDDIAARCLYMSGCYERRY 333
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A7S3NJM7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJM7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.930e-11
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRY 120
            +YSTQSDKVINSGEGG +VT D ++AA+ I++SGAYERRY
Sbjct:  208 SYSTQSDKVINSGEGGLLVTDDAQIAAQLIYMSGAYERRY 247
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A7S0J159_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J159_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 7.000e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRY 120
            AYSTQSDKVINSGEGGF+ T+D  + A+AI+LSG YERRY
Sbjct:  286 AYSTQSDKVINSGEGGFLTTNDGGLMAKAIYLSGCYERRY 325
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A7S3FD09_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FD09_9VIRI)

HSP 1 Score: 63.2 bits (152), Expect = 1.780e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    4 YSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRY 120
            YSTQSDKVINSGEGGFI T  D++AA+AI+ +G YERRY
Sbjct:  235 YSTQSDKVINSGEGGFITTDVDDIAAQAIYYTGCYERRY 273
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: D7FMY1_ECTSI (Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.330e-10
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRYG 123
            AYS QSDK+INSGEGGF+ T+D+E+ ++AI++SG YE RYG
Sbjct:  227 AYSCQSDKLINSGEGGFLTTNDEELFSKAIYMSGCYEMRYG 267
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BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Match: A0A7W3N0G5_9ACTN (dTDP-4-amino-4,6-dideoxygalactose transaminase n=2 Tax=Thermomonospora TaxID=2019 RepID=A0A7W3N0G5_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 1.950e-8
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERR 117
            A+STQSDK +N+GEGGF+VTSD E  ARA+  SGAYE R
Sbjct:  202 AFSTQSDKSLNTGEGGFLVTSDPEAYARAVVYSGAYENR 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11230.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ZU99_9STRA5.170e-1482.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4E6V5_9STRA7.050e-1480.49Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2WEJ6_9STRA7.270e-1480.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5K4I9_9PHAE4.390e-1382.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8ECV9_9CHLO8.830e-1377.50Aminotransferase, DegT/DnrJ/EryC1/StrS family prot... [more]
A0A7S3NJM7_9STRA6.930e-1172.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0J159_9EUKA7.000e-1175.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3FD09_9VIRI1.780e-1074.36Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
D7FMY1_ECTSI3.330e-1065.85Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7W3N0G5_9ACTN1.950e-869.23dTDP-4-amino-4,6-dideoxygalactose transaminase n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11230contigH-paniculata_contig11230:8105..8233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.9e-10
Seed eggNOG ortholog41875.XP_007514377.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Aminotransferase, DegT DnrJ EryC1 StrS family protein
EggNOG OGs2QQV8@2759,COG0399@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.046599-CDS-H-paniculata_contig11230:8104..82331622928827.046599-CDS-H-paniculata_contig11230:8104..8233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11230 8105..8233 +
1691480636.1301537-CDS-H-paniculata_contig11230:8104..82331691480636.1301537-CDS-H-paniculata_contig11230:8104..8233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11230 8105..8233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11230.786.1prot_H-paniculata_contig11230.786.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11230 8105..8233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11230.786.1

>prot_H-paniculata_contig11230.786.1 ID=prot_H-paniculata_contig11230.786.1|Name=mRNA_H-paniculata_contig11230.786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
AYSTQSDKVINSGEGGFIVTSDDEVAARAIFLSGAYERRYGG*
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mRNA from alignment at H-paniculata_contig11230:8105..8233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11230.786.1 ID=mRNA_H-paniculata_contig11230.786.1|Name=mRNA_H-paniculata_contig11230.786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig11230:8105..8233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATACTCAACCCAGTCCGACAAGGTGATCAACTCGGGAGAGGGTGGATT
TATTGTGACGTCAGACGACGAGGTCGCCGCGAGGGCTATCTTTTTGTCGG
GGGCGTACGAACGGCGTTACGGTGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11230:8105..8233+

>mRNA_H-paniculata_contig11230.786.1 ID=mRNA_H-paniculata_contig11230.786.1|Name=mRNA_H-paniculata_contig11230.786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig11230:8105..8233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATACTCAACCCAGTCCGACAAGGTGATCAACTCGGGAGAGGGTGGATT
TATTGTGACGTCAGACGACGAGGTCGCCGCGAGGGCTATCTTTTTGTCGG
GGGCGTACGAACGGCGTTACGGTGGGTAGGCATACTCAACCCAGTCCGAC
AAGGTGATCAACTCGGGAGAGGGTGGATTTATTGTGACGTCAGACGACGA
GGTCGCCGCGAGGGCTATCTTTTTGTCGGGGGCGTACGAACGGCGTTACG
GTGGGTAG
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