mRNA_H-paniculata_contig1123.785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1123.785.1
Unique NamemRNA_H-paniculata_contig1123.785.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1123.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1123contigH-paniculata_contig1123:1009..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size514
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1123.785.1prot_H-paniculata_contig1123.785.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1123 1161..2864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.9294581-UTR-H-paniculata_contig1123:1008..11601622928826.9294581-UTR-H-paniculata_contig1123:1008..1160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1123 1009..1160 +
1691480636.0855572-UTR-H-paniculata_contig1123:1008..11601691480636.0855572-UTR-H-paniculata_contig1123:1008..1160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1123 1009..1160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.9432786-CDS-H-paniculata_contig1123:1160..11851622928826.9432786-CDS-H-paniculata_contig1123:1160..1185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1123 1161..1185 +
1691480636.0956044-CDS-H-paniculata_contig1123:1160..11851691480636.0956044-CDS-H-paniculata_contig1123:1160..1185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1123 1161..1185 +
1622928826.9798837-CDS-H-paniculata_contig1123:1794..20251622928826.9798837-CDS-H-paniculata_contig1123:1794..2025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1123 1795..2025 +
1691480636.1044655-CDS-H-paniculata_contig1123:1794..20251691480636.1044655-CDS-H-paniculata_contig1123:1794..2025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1123 1795..2025 +
1622928826.998696-CDS-H-paniculata_contig1123:2760..28641622928826.998696-CDS-H-paniculata_contig1123:2760..2864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1123 2761..2864 +
1691480636.114802-CDS-H-paniculata_contig1123:2760..28641691480636.114802-CDS-H-paniculata_contig1123:2760..2864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1123 2761..2864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1123.785.1

>prot_H-paniculata_contig1123.785.1 ID=prot_H-paniculata_contig1123.785.1|Name=mRNA_H-paniculata_contig1123.785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MDRFRLKSAAAGAGTTSAEPSGHTMSRTLTPSANVVAPKRSEGIAGSGTR
GDAMSGSAAGPFMSRSVRGVSNLPPSSSESGFFSSGLGKRSAPMTSAGSP
HRQPALSEVTGNSCNPSNNA
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mRNA from alignment at H-paniculata_contig1123:1009..2864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1123.785.1 ID=mRNA_H-paniculata_contig1123.785.1|Name=mRNA_H-paniculata_contig1123.785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1856bp|location=Sequence derived from alignment at H-paniculata_contig1123:1009..2864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCCCCAACCCACGGCGTCTGAAGAATACCCACGCAATCATACCTCAA
CGAACTCTGCTTAGGTCCTCCTGTTCAAAGTTGCACGCGCTGCCACATCT
TCTTGCACTTGGTTGTACAACAGCGGTATAACAGTAACTGCCAAGAACTG
AGATGGACCGTTTTCGCCTCAAAAGCGGTGAGATTGTCTTAGTTGATGGG
CTTGCGCCACTATTCGTTCTACTTGTTTCGGCGAGGCTTATTGGTCGCGA
GCACTTACAGCATACCCTACAATCGCGTTTATGCTGTGCGGGGAAGTGCC
GACCTTTCTTTTCGGGGATGTGATCAATACACACAACACCAAGGTCCACA
CTTTGGCCAATTTCGCGTCAAATGTACCTTCTCTGGTAGTATGCAGCTGA
GTGTTGCCGGAGATCTTCCATTTCTGCAACCACCACCACCAGCGTGCAGC
ATCTATCTGATGTTGCAACTAGAGCCGGAGCTTCGAGCGCTCTCTAAAAA
GCGGAACATTTAGTTCTAGCTGTGTGCCGCTGAGTCACCCTACGGTAGGG
GGGGGGGGTATTTGAGCTGCTTTTTCTAATGAAGGAGCCGCTTTAAGAAG
GGGAACAGGCATGTTTTTCGCTCTTTTTTGCATTTGTTGCCCACTTAAAC
AGAAACTCTACTTGAACTCGTGGAATATACACCTTTAGGGATAAATATGC
ACATTGCCGATCAGGATTCGTTGTACTGCCAACCGGGATCATTTGACACC
CCATCTATTCATGTCGACGCTTCTCTCAAACCACAGCAGCAGCGGGTGCT
GGAACAACTTCCGCGGAGCCTTCGGGACACACAATGTCCCGTACGCTAAC
ACCATCAGCAAATGTAGTAGCACCAAAGAGATCAGAGGGAATCGCAGGGT
CTGGTACTCGTGGTGATGCAATGAGTGGTAGTGCTGCTGGACCTTTCATG
AGCCGATCGGTTAGGGGGGTTTCCAATTTGCCGCCGTCCTCAAGCGAATC
TGGATTCTTTTCGTCGGGTGAGCACAGCTAGAACGCAGCATCGATGAGCA
GCTATGATGATTACATAGGTGTGCCATGTTTGTGCGAATCATCAAAGCTG
CGAGGACCATGCATACTCGGTGATATTCTTCTTCCAGAGTCGCGGCTGGG
CAGTCTGGATGTTTCAATTGATAAGGCACTGTGCCACCGTGGTGGTTTCG
TTGGAGGTTTCCACCTCCACTTTCGCCCAGCTCAATATGCAAAGTGTGTG
CTGAAGGCTTCATCTTAAAGCTCGATCTGAAAATCGATTACTACATTGGT
TGAATTTTGTCATCCCGAAGGGTTCGAAAGATTCGCTCGCCTAGCATCAG
AATGCTTGCCGTGCCTGAGAAGGGCCGAACGGACCTGCATGATCTCAATT
CCCGCGAAACACTCATACCGTATCGAGAACGATGTCAGGGGGGGGGGTCA
CAATGGGCTAAGGGCTGCGGGCTTTCTACAGAAGATACCCCGAGGATTTG
GATTCAGTGTCTCCTGTTCTTGGTAGATGTCATGGGTGTCATTATGTATC
TGGTGTAATACCTTAATAATAATTTTCCATGTAATGCTGGATAGGATAGT
ATAATAATTTCCTCGTGGCGGGAGAAATATAGATTTCCCTGCCCCCAGAG
AATTTCCGGGTCTGATATTCTTCCCCCCTCTCGATTGTTAAACGACTTAA
ACATAACAACCAACTACACCGCCCTGCCCATCTCAAATGTTCCCTCGAGT
AGGCCTCGGAAAACGCTCTGCGCCCATGACATCAGCGGGATCACCCCACC
GCCAACCTGCCCTTAGCGAAGTCACCGGTAATTCGTGCAACCCCAGTAAT
AACGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1123:1009..2864+

>mRNA_H-paniculata_contig1123.785.1 ID=mRNA_H-paniculata_contig1123.785.1|Name=mRNA_H-paniculata_contig1123.785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig1123:1009..2864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCGTTTTCGCCTCAAAAGCGATGGACCGTTTTCGCCTCAAAAGCG
CAGCAGCGGGTGCTGGAACAACTTCCGCGGAGCCTTCGGGACACACAATG
TCCCGTACGCTAACACCATCAGCAAATGTAGTAGCACCAAAGAGATCAGA
GGGAATCGCAGGGTCTGGTACTCGTGGTGATGCAATGAGTGGTAGTGCTG
CTGGACCTTTCATGAGCCGATCGGTTAGGGGGGTTTCCAATTTGCCGCCG
TCCTCAAGCGAATCTGGATTCTTTTCGTCGGCAGCAGCGGGTGCTGGAAC
AACTTCCGCGGAGCCTTCGGGACACACAATGTCCCGTACGCTAACACCAT
CAGCAAATGTAGTAGCACCAAAGAGATCAGAGGGAATCGCAGGGTCTGGT
ACTCGTGGTGATGCAATGAGTGGTAGTGCTGCTGGACCTTTCATGAGCCG
ATCGGTTAGGGGGGTTTCCAATTTGCCGCCGTCCTCAAGCGAATCTGGAT
TCTTTTCGTCGGGCCTCGGAAAACGCTCTGCGCCCATGACATCAGCGGGA
TCACCCCACCGCCAACCTGCCCTTAGCGAAGTCACCGGTAATTCGTGCAA
CCCCAGTAATAACGCAGCCTCGGAAAACGCTCTGCGCCCATGACATCAGC
GGGATCACCCCACCGCCAACCTGCCCTTAGCGAAGTCACCGGTAATTCGT
GCAACCCCAGTAATAACGCA
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