mRNA_H-paniculata_contig11228.784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11228.784.1
Unique NamemRNA_H-paniculata_contig11228.784.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 1.570e-78
Identity = 202/456 (44.30%), Postives = 245/456 (53.73%), Query Frame = 1 
Query:    1 DSAHVATLTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSC----ENDPAAFLLSIASAALPM---GVTVPPSPDDGTSGGGRVEGRATASDGRNLDNDGGVALA-------------------------------LDTGIGYVGVDARASVVVGT--GEGDFGTGIERHAAITRNGHDDVSGGRFPADYPTTPVLPDIGGSTEQLSVGVG----ADIASGDGGLRSRRRGAPASAVELENAFNRSAEALSTKLEAGSLVAEAARGGEGGYGVMMINGKSRTRASMIWISWVLIHRQASELADSSLTTTWQDHWTILTSMARHAFVGVFYGSLW 1236
            D+ H A+LTVRQTL FAAKLRM +T TA DR KRVA+MV MLGLEGVLET VG E+ RGISGGE KRLS+AVEA+DLPGLLLLDEPTSGLDATTAL+VLT VR LA+LGRTV++SLHQPS EMF LLD CLLL RGG  AYFGRA+ A+AYFAS+GL PPPS     + +PA FLLS+ + + P    G     + DDG     R     T+S         GV +A                               +D GIG+VGV+    +   +  G G  G G                 GR     P TP   ++G +  Q S+ VG    A+  + + G+R  RR A    + ++ A                   EA RG                  SM+W+S VL HR+        L TTWQD   I  S+ RHAFVG FYG+LW
Sbjct: 1159 DNVHHASLTVRQTLQFAAKLRMSNTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPGLLLLDEPTSGLDATTALEVLTAVRGLADLGRTVILSLHQPSGEMFELLDVCLLLARGGYPAYFGRANRAMAYFASVGLTPPPSSASVTDQNPADFLLSLLAQSSPSSNNGTLTATASDDGDQH-DRGSSLPTSSSSSPSRFSAGVDIAPTMAXXXXXXXXXXXXXXXXXXXXGLSPLLDVDLGIGHVGVEVGQGLSTPSRRGGGFSGIGXXXXXXXXXXXXXXXYNGR----RPVTPA--ELGRAFLQSSLSVGIRQEAEREAAEAGVR--RRDAERMGLTVDGAE------------------EAGRGWR----------------SMLWLSAVLTHRE--------LVTTWQDKARIFQSLGRHAFVGAFYGALW 1563
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 7.500e-78
Identity = 198/432 (45.83%), Postives = 237/432 (54.86%), Query Frame = 1 
Query:    1 DSAHVATLTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSC----ENDPAAFLLSIASAALPM---GVTVPPSPDDGTSGGGRVEGRATASDGRNLDNDGGVALALDTGIGYVGVDARASVVVGTGEGDFGTGIERHAAITRN---------GHDDVSGGRFPADYPTTPVLPDIGGSTEQLSVGVGADIASGDGGLRSRRRGAPASAVELENAFNRSAEALSTKLEAGSLVAEAA---RGGEG-GYGVMMINGKSRTRASMIWISWVLIHRQASELADSSLTTTWQDHWTILTSMARHAFVGVFYGSLW 1236
            D+ H A+LTVRQTL FAAKLRM +T TA DR KRVA+MV MLGLEGVLET VG E+ RGISGGE KRLS+AVEA+DLPGLLLLDEPTSGLDATTAL+VLT VR LA+LGRTV++SLHQPS EMF LLD CLLL RGG  AYFGRA+ A+AYFAS+GL PPPS     + +PA FLLS+ + + P    G     + DDG     R     T+S         GV +A                                     +         GH  V  G+ P+        P IGG  +      G           + RR  P +  EL  AF +S+ ++  + EA    AEA    R  E  G  V  +    R   SM+W+S VL HR+        L TTWQD   I  S+ RHAFVG FYG+LW
Sbjct:  756 DNVHHASLTVRQTLQFAAKLRMCNTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPGLLLLDEPTSGLDATTALEVLTAVRGLADLGRTVILSLHQPSGEMFELLDVCLLLARGGYPAYFGRANRAMAYFASVGLTPPPSSASVTDQNPADFLLSLLAQSSPSSNNGTLTATASDDGDQH-DRGSSLPTSSSSSPSRFSAGVDIAPTMATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPLLDVDLGIGHVGVEVGQGPSTPSRRGGFPGIGGDDD-----AGCXXXXXXXXXYNGRR--PVTPAELGRAFLQSSLSVGIRQEAEREAAEAGVRRRDAERMGLTVDGMEEAGRGWRSMLWLSAVLTHRE--------LVTTWQDKARIFQSLGRHAFVGAFYGALW 1171
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A2K3M4R5_TRIPR (ABC transporter G family member 22-like protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3M4R5_TRIPR)

HSP 1 Score: 143 bits (361), Expect = 5.800e-37
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 1 
Query:   22 LTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAALPMGVTVPPSPDD 573
            LTV++TL +AA+LR+P T T   + KR   ++  LGLE   +T +G    RGISGGE KR+ I  E +  P +L LDEPTSGLD+TTAL ++  ++++A  G+TVV ++HQPS  +F   DK +LL +G SL YFG+A  A+ YF SIG  P      +PA FLL +A+  +   V+VP   +D
Sbjct:   19 LTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGISGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKASEAMNYFQSIGCTP--LISMNPAEFLLDLANGNI-NDVSVPSELED 198
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BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: L8HL07_ACACA (ABC2 type transporter superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HL07_ACACA)

HSP 1 Score: 152 bits (384), Expect = 1.040e-36
Identity = 83/176 (47.16%), Postives = 124/176 (70.45%), Query Frame = 1 
Query:    1 DSAHVATLTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLG-RTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIA 525
            D+  + TLTVR+T+ +AA+L++PS  T  ++ +RV  ++A L L  + +++VG  + R ISGGELKR++IA+E +  P LL LDEPTSGLD+  A D++  ++ LA  G RTV+ ++HQPS  MF   DK LLL++G  + YFG+AD A+ YF+ +G+RPPP   ++PA F+L IA
Sbjct:  207 DNIMLETLTVRETISYAARLKLPSKMTRAEKEQRVDRVMAELRLTHIADSRVGGSSSRSISGGELKRVAIAIELVSSPSLLFLDEPTSGLDSNGATDLVQLLKSLATRGQRTVLCTIHQPSSHMFNAFDKLLLLSQG-RVIYFGKADKAVDYFSGLGIRPPPM--SNPAEFILDIA 379
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A392N4D4_9FABA (ABC transporter G family member 22-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N4D4_9FABA)

HSP 1 Score: 141 bits (355), Expect = 4.990e-36
Identity = 80/184 (43.48%), Postives = 118/184 (64.13%), Query Frame = 1 
Query:   22 LTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAALPMGVTVPPSPDD 573
            LTV++TL +AA+LR+P T T  ++ KR   ++  LGLE   +T +G    RG+SGGE KR+ I  E +  P LL LDEPTSGLD+TTAL ++  + ++A  G+T+V ++HQPS  +F   DK +LL +G +L YFG+A  A+ YF  IG  P      +PA FLL +A+  + + ++VP   +D
Sbjct:   14 LTVKETLTYAARLRLPKTLTKEEKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKG-NLLYFGKASEAMDYFKFIGCSP--LITMNPAEFLLDLANGNM-LDISVPSELED 193
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A2I0A9S8_9ASPA (ABC transporter G family member 22 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A9S8_9ASPA)

HSP 1 Score: 150 bits (378), Expect = 6.880e-36
Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 1 
Query:    1 DSAHVATLTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAALPMGVTVPPSPDDGTSGGGRVEGRATASDGRN 630
            D    A LTVR+TL +AA LR+P T T + + +R   +V  LGLE   +T +G    RG+SGGE KR+ I  E +  P LL LDEPTSGLD+TTAL ++  + ++A  G+TVV ++HQPS  +F   DK +LL RG SL YFG+A  A+ YF SIG  P      +PA FLL +A+  +   V++P   DD      +V+ +   SD RN
Sbjct:  241 DDVLFAHLTVRETLTYAALLRLPQTMTKQQKEERATDVVYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQVLHDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGRG-SLLYFGKASEAMVYFQSIGCSP--QIPMNPAEFLLDLANGTI-KDVSIPSELDD------KVQTKNLGSDTRN 440
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A8E6YGJ4_SALMI (ABC transporter n=1 Tax=Salvia miltiorrhiza TaxID=226208 RepID=A0A8E6YGJ4_SALMI)

HSP 1 Score: 148 bits (374), Expect = 9.300e-36
Identity = 82/172 (47.67%), Postives = 117/172 (68.02%), Query Frame = 1 
Query:   22 LTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAAL 537
            LTV +TL + A LR+P T T  ++A++  ++++ LGL    ++ VGS   RG+SGGE KR+SI  E +  P LLLLDEPTSGLD+TTAL ++  +REL N GRT+ M++HQPS  +F L  K +LL+ G +L Y+G+A  AL YF++IG  PP +    PA FLL +A+  +
Sbjct:  112 LTVFETLLYTALLRLPKTLTRAEKAEQAEAVISQLGLSRCRDSAVGSHVVRGVSGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTALRIVATLRELVNGGRTIAMTIHQPSTTLFYLFHKIILLSEG-NLLYYGKASVALDYFSTIGFAPPLAVN--PADFLLDLANGVV 280
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A7J8LFV0_9ROSI (ABC transporter domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8LFV0_9ROSI)

HSP 1 Score: 143 bits (361), Expect = 1.040e-35
Identity = 79/172 (45.93%), Postives = 113/172 (65.70%), Query Frame = 1 
Query:   22 LTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAAL 537
            LTV++TL +AA+LR+P   T + + KR   ++  LGLE   +T +G    RG+SGGE KR+ I  E +  P LL LDEPTSGLD+TTAL  +  ++++A +G+TV+ ++HQPS  +F   DK +LL +G SL YFG+A  A+ YF+SIG  P      +PA FLL +A+  L
Sbjct:  118 LTVKETLTYAARLRLPKVLTRQQKEKRAVDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRTIQTLQDIAEVGKTVITTIHQPSSRLFHKFDKLILLGKG-SLLYFGKASEAIDYFSSIGCSP--LIAMNPAEFLLDLANGNL 286
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A2K1KJY7_PHYPA (ABC transporter domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KJY7_PHYPA)

HSP 1 Score: 149 bits (375), Expect = 1.140e-35
Identity = 79/173 (45.66%), Postives = 119/173 (68.79%), Query Frame = 1 
Query:   22 LTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAALP 540
            LTV++TL +AA+LR+P T T  ++ KR  S++  LGL+   +T +G + KRG+SGGE KR+SI  E +  P LL LDEPTSGLD+TTAL ++  +++LA  G+T++ ++HQPS  ++ + DK +LL+ G  L Y+G A+ A++YF SI + PP     +PA FLL +A+   P
Sbjct:  161 LTVKETLVYAARLRLPDTYTTEEKVKRAESIINELGLDRCKDTIIGGQFKRGVSGGERKRVSIGHEMLVDPSLLFLDEPTSGLDSTTALRIIKTLKDLAKSGKTIITTIHQPSSTVYYMFDKMILLSEG-DLLYYGSANHAMSYFESIQISPP--FPMNPADFLLDLANGVTP 330
[Close]
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Match: A0A067FX70_CITSI (ABC transporter domain-containing protein (Fragment) n=3 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FX70_CITSI)

HSP 1 Score: 147 bits (370), Expect = 1.420e-35
Identity = 82/172 (47.67%), Postives = 115/172 (66.86%), Query Frame = 1 
Query:   22 LTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLETQVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLTGVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALAYFASIGLRPPPSCENDPAAFLLSIASAAL 537
            LTV++TL +AA LR+P+T T + + KR   ++  LGLE   +T +G    RG+SGGE KR+ I  E +  P LL LDEPTSGLD+TTAL ++  ++++A  G+TVV ++HQPS  +F   DK +LL +G SL YFG+A  A+AYF+SIG  P      +PA FLL +A+  L
Sbjct:  117 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKASEAMAYFSSIGCSP--QIAMNPAEFLLDLANGNL 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11228.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK8_9PHAE1.570e-7844.30ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSM1_ECTSI7.500e-7845.83ABC transporter domain-containing protein n=1 Tax=... [more]
A0A2K3M4R5_TRIPR5.800e-3745.65ABC transporter G family member 22-like protein (F... [more]
L8HL07_ACACA1.040e-3647.16ABC2 type transporter superfamily protein n=1 Tax=... [more]
A0A392N4D4_9FABA4.990e-3643.48ABC transporter G family member 22-like (Fragment)... [more]
A0A2I0A9S8_9ASPA6.880e-3644.29ABC transporter G family member 22 n=1 Tax=Apostas... [more]
A0A8E6YGJ4_SALMI9.300e-3647.67ABC transporter n=1 Tax=Salvia miltiorrhiza TaxID=... [more]
A0A7J8LFV0_9ROSI1.040e-3545.93ABC transporter domain-containing protein n=2 Tax=... [more]
A0A2K1KJY7_PHYPA1.140e-3545.66ABC transporter domain-containing protein n=1 Tax=... [more]
A0A067FX70_CITSI1.420e-3547.67ABC transporter domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11228contigH-paniculata_contig11228:645..5600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue6.7e-72
Seed eggNOG ortholog2880.D8LSM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1239
Cds size1239
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11228.784.1prot_H-paniculata_contig11228.784.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11228 645..5600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.8443794-CDS-H-paniculata_contig11228:644..7341622928826.8443794-CDS-H-paniculata_contig11228:644..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 645..734 -
1691480636.0038016-CDS-H-paniculata_contig11228:644..7341691480636.0038016-CDS-H-paniculata_contig11228:644..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 645..734 -
1622928826.8586042-CDS-H-paniculata_contig11228:1427..17351622928826.8586042-CDS-H-paniculata_contig11228:1427..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 1428..1735 -
1691480636.0227003-CDS-H-paniculata_contig11228:1427..17351691480636.0227003-CDS-H-paniculata_contig11228:1427..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 1428..1735 -
1622928826.8679593-CDS-H-paniculata_contig11228:1768..21691622928826.8679593-CDS-H-paniculata_contig11228:1768..2169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 1769..2169 -
1691480636.032103-CDS-H-paniculata_contig11228:1768..21691691480636.032103-CDS-H-paniculata_contig11228:1768..2169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 1769..2169 -
1622928826.878404-CDS-H-paniculata_contig11228:2555..27301622928826.878404-CDS-H-paniculata_contig11228:2555..2730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 2556..2730 -
1691480636.0417504-CDS-H-paniculata_contig11228:2555..27301691480636.0417504-CDS-H-paniculata_contig11228:2555..2730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 2556..2730 -
1622928826.889307-CDS-H-paniculata_contig11228:3872..40011622928826.889307-CDS-H-paniculata_contig11228:3872..4001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 3873..4001 -
1691480636.0534246-CDS-H-paniculata_contig11228:3872..40011691480636.0534246-CDS-H-paniculata_contig11228:3872..4001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 3873..4001 -
1622928826.8992133-CDS-H-paniculata_contig11228:5464..56001622928826.8992133-CDS-H-paniculata_contig11228:5464..5600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 5465..5600 -
1691480636.0742056-CDS-H-paniculata_contig11228:5464..56001691480636.0742056-CDS-H-paniculata_contig11228:5464..5600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11228 5465..5600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11228.784.1

>prot_H-paniculata_contig11228.784.1 ID=prot_H-paniculata_contig11228.784.1|Name=mRNA_H-paniculata_contig11228.784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=413bp
DSAHVATLTVRQTLDFAAKLRMPSTTTARDRAKRVASMVAMLGLEGVLET
QVGSETKRGISGGELKRLSIAVEAMDLPGLLLLDEPTSGLDATTALDVLT
GVRELANLGRTVVMSLHQPSPEMFGLLDKCLLLTRGGSLAYFGRADCALA
YFASIGLRPPPSCENDPAAFLLSIASAALPMGVTVPPSPDDGTSGGGRVE
GRATASDGRNLDNDGGVALALDTGIGYVGVDARASVVVGTGEGDFGTGIE
RHAAITRNGHDDVSGGRFPADYPTTPVLPDIGGSTEQLSVGVGADIASGD
GGLRSRRRGAPASAVELENAFNRSAEALSTKLEAGSLVAEAARGGEGGYG
VMMINGKSRTRASMIWISWVLIHRQASELADSSLTTTWQDHWTILTSMAR
HAFVGVFYGSLW*
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mRNA from alignment at H-paniculata_contig11228:645..5600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11228.784.1 ID=mRNA_H-paniculata_contig11228.784.1|Name=mRNA_H-paniculata_contig11228.784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4956bp|location=Sequence derived from alignment at H-paniculata_contig11228:645..5600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAGCGCACATGTTGCGACTCTGACAGTGAGACAGACGCTGGATTTTGC
CGCTAAACTGCGTATGCCATCAACCACTACAGCGCGCGACAGGGCCAAGA
GAGTGGCCTCCATGGTCGCCATGCTCGGTCTTGAGGGTGAGAGTCATACC
TGGCTAGTTGAGAGGGGTGGGGAACACACGACGAGGGTCTGTCTATCTTT
CGAGATGGACGAATCTACTATCACGGAGTGTGGAGATTCGGTTTCTGTCT
CTGGGCTGGCATCTCAAACTTCCCAAAATTTGGGGTCAGGAACCAACCGT
AGGCCCTAGAAACAGGATCAAACGTCCGCGGGAATCCATGAAGTGATCTG
GATAAATATAGAACAGAACAGAAAGACTGATTCGTTTTGCCTTGACGGCT
GGTCATCAACAAGGAGAATTACCATAAGGTGGAGTCGAAATAGCTACTGT
ACTGGTATGTCCTGAAAACTTAAGAAGTAATGCTGGCAAATATGAGGTAC
CTTGTATGTAGGTCGCAACACTCTCTCCACGAGGGCACCTTATGTAGGTT
TACCTACGGTAGAGCCTTTCGCCCGTTACCCCAGAAGTCAAGGGTTGGTC
ATTCAGGGAGAATTGTGTGTCTGCTGTAATTTATCCTCTCTTATGACTGT
GATATTTCGTTGAGAGCCATTCGGAACAGGCAGTGCAAAATTTCGGCCAA
ACTTGAAATTTGCTTATATCCGTGGCAAACACCTCTTTTCGAGCGCGACG
TGCCCAACACACGTCGTCTACCGGTGCGACAGCCACAGGTTGCGCTGCGG
CTATCGTAAACAGCTGAGACTTCCGCGCTTCCAAAGCGCTGTCTCCTTTT
GTTTGTCGTTTTTAAGAAAATTTCACCAGAACTAAATGACTGCTATCTAT
GATGACCCTATGAAACACATTTTAGTTCTCCCCCAAAATGGACAAATTTC
CAACAAGCACAATGTGCCATTGGCAGCAATGTTTTTATATATTCTTGGTG
CACGGGGAGCTGAACTTAATTAATATCCCACACTGCTTGGGCAATCGACG
CTCAACCGACTCCCTCGAGGAAACCTCCACAAGCATCCACTACGGCTATA
CCTGCCGCGAAACTGAATACAAAAAAAAAAATCCAACAATTTTTTCCTCT
CGTATTTTCCCAAGGCGATCTTCATGTGCCAAGGTATCACATTCGATTAA
GGAGTTTTCCATATACCAGCTACAGTGCTGTATCTGATTCGAACTTGCCG
TACCCCCAAGGTTGATCGTCGAGTTGTGCAGCATGGATGCAGTTTTGTAT
ATAAGTAACGCAAAACCTAGCTCTGCTTTGTTCTGGGCGGGGTGTTTGCT
GTTTGCAAGTACTCTAGTTACTGGTACTTCCCTTCGTTGAGATGATTGCA
CACATTTGTTGTCGGCCTTACCAGCAAACCTGTCGCTTTTTGATTCGTTG
TTTCCGAGCGGGGCGAGGAATGGAATGGAATGGTATGTTGCCGTTTGAAG
AAAACAAAATAGCAAGATATATACGGTATGTAGCGAAGCTCACATTTTTG
TTACTCGTTGTGTTGCGTGTGTGTGTGTTTGTGTATGTTCCTCGTACAGG
AGTGTTGGAAACACAGGTGGGAAGTGAAACGAAACGCGGCATCAGCGGTG
GCGAGCTGAAACGGCTGAGCATTGCAGTGGAAGCCATGGATTTGCCGGGT
CTGCTCCTCCTGGACGAGCCGACATCAGGTAGGCCGTTCTTGCAGGCTGA
ACTTACCTCTCATACGCCACTATTAATAGTAGAAACGTTCAAGTATGTGC
CAGAGCACTGTTGCGAGAGGACGACGAAGTATGTGGATTTGATTCGGAGC
ATGCGAATATCAGGTTGTGTGTGTGTTATTTTGTGTGCCCAAACAACGCA
ACGTAGTTGCGAAGAGGCGTGGTTGCAACGGAAGCAGCGGGGGGGGGGAG
GGGGCAGTGCGGGAGGAGGTGAAAGTGTAGTTGGTTGCCGAGAGGAGCTA
CGATTTATGGCGGGGTCGTACGTAACGGCGTGAGGCGCCGATTTGTGTCC
GCCGTATATTTAATCGTCGCACAAAATGGTCTCTCGTGGATAAACTGGCG
TGCCTGTATTTACCTTTTCTATTGTGATTTTCGTGCCAGCTGGTTCCACT
GTTTTTCAAGATGCATCTGCAAGTGGAGGAGACTTGATGTGTTTGGAATT
CATCGTGCAAGACTGAGATACATAGGTGGTAACCTTACTCACGATGGTGT
AGGTGAAGGGGGGTGAGGCGAGGTAAAACCCACAGATGAATACAGACGAA
TCTACTTTCGTGGTTTTGGATGTGCTACTAGCAACGGTCTTAGGATTCAT
CAAAACAACATGTTGTAGGATTCACCGTGTCCACGGCCAGGTTGAATCAG
GATACAGCACGTGGACTTGCACACCTGCCAGGGACTGTGACAGTATCACT
CACGCCTGAAAATAAATGCCTATCAAGATAAACCCCCAAGTTGACATGGT
ACAAACAGGCACGCACACGACAAACCCCAAGCTCCTAACATCATTTCTGT
GTATGTCACAAGCCCCCCAACACTATTGTATAAACCGTTCTCTTGATTCT
CCTGAGGGTATGTCGCTAGTTCTGAATCCGTGAGGTGAAGGGGCGAAGCT
GCCTCCCCCTCTATGGTACTGTACTGTACACTACACTACACTACAGTGCA
GTATTACAAGGTTCATTGTTTGAAAAAGGCGAGTGGCATGCTCGCCGCAC
TACGTTACATCCCATTATTACAGGCGTCTGTGTGTACGAACACTTATACC
ACCCCGTCCTCCACCGCTGCTGGCATCGCCACCGCCGCCGCTGCACGCGC
GGGATATTAACCCGCATCAGGGCTAGACGCGACGACAGCACTAGATGTTT
TGACTGGAGTGCGCGAGTTGGCCAACCTCGGCCGTACCGTGGTGATGAGC
CTTCACCAGCCTTCCCCGGAGATGTTTGGGCTATTGGATAAGTGTCTTCT
GCTCACGAGGGGAGGCTCGCTTGCGTACTTTGGCAGGGCGGATTGGTGAG
CAAATGTGTGTGTGTGTGTTTCGCAGTCTATTAATAGTAGCCTGCGAGCG
TTTTATTCTGCCTTTTTTTACCAGCCGGGAGTGTCCAAAGTCAGCAACAA
CAACTGTGAGCACACGCCTCCCCCCCTGGCGGTGGTCCACTGTGGGTAAT
ATTCCCTCTTTTCACAGCATTGCATGTTTGCGGTGTACTCGAGCCTGCAG
AGACTACCGAGAGTGCAGCGTTTGTTACATCGTGGTGAGAACCTCGAAGG
CAAACCACGAAAAATATTACCCCCGCTACCCCTCCCAATTTCTGATTTCA
AAGCACAACAAAGCACAACAAAGCACAACTAACCACACCTCTTTGCTTGC
TATTTTCATTACCTTTCCGTGGTGGTTGAAGCGCGCTGGCGTATTTTGCA
TCGATCGGCCTTCGGCCGCCGCCGTCCTGCGAGAACGATCCGGCGGCGTT
CCTGTTGTCAATTGCCTCGGCCGCCCTACCCATGGGTGTAACTGTTCCCC
CTTCCCCCGACGATGGGACATCGGGAGGAGGAAGAGTAGAAGGCAGGGCG
ACTGCTTCCGACGGGCGTAATCTCGACAATGACGGGGGTGTTGCTCTAGC
GCTCGATACCGGAATTGGATATGTTGGCGTGGATGCTAGAGCGAGTGTTG
TGGTAGGAACAGGAGAGGGCGATTTCGGGACAGGAATAGAAAGACATGCC
GCGATAACAAGGAACGGACATGATGACGTCAGCGGTGGGAGATTCCCCGC
TGATTACCCTACTACCCCCGTTCTTCCTGATAGTCTCGAGGATAGTAGCG
AGGACGTCCGCCAAGTCGGTGGAAGCACAGAACAACTATCGGTTGGCGTC
GGCGCTGATATTGCTAGTGGGGATGGCGGTCTCAGGTCTCGACGAAGAGG
CGCACCCGCCTCCGCAGTGGAACTTGAGAATGCCTTCAATAGGTCCGCGG
AGGCGCTGTCGACTAAGTTGGAGGCCGGTAGCTTAGTGGCGGAAGCGGCT
CGTGGTGGCGAAGGTGGATACGGGGTCATGATGATCAATGGGAAGAGCAG
GACAAGGGCCTCTATGATTTGGATATCATGGGTGCTGATTCACAGACAGG
CGAGCGAGTTGGCAGATTCTAGTGTATGTGTGCTCTTGGATTTGTGGGTC
GTGTTCCGTTTTGTGTGTTAATAATTATTTCCGTGGTCAACCTGCGAAGG
CGAGGCTCATTTTTGTTTTTGGTGTTTTCAATATGGCAGCATTTTTTTAA
TACTCGCGATGACAATGTAGTAACATTGTTCAGCCGCGAATGTGTGCCGT
AAATGGATCATGACCAAGTCGCACCTTGCGGGTTAAGGTTACCGCCTGAC
CGATTTTTTTTTAATAGAAATCTAATAGCTTTTTTTGTTTTCTTGTTGTT
GAGCTTTCTAAACAAGATTCAAAATTTTGTATTTCAATTGGAAATATTCG
TATTATTTAATATCCTCGGGTACGTTTTGGAGGTTCTGTACGTGATAGTG
CTAAGTGACATGTAATTGAAACGTATTTGAGAATTTATTTGATTTATAAA
TGCAGAGGTTAGGTTAGATGCATCGATGCTTGTGAAGTAAGGATCATTTT
TTTAATCGTTGAATTTACTTCGGAAATATCTCTCTTTTTTTTTTACGTTT
GACTGTTTGTTGCTGTTAACGACTGTAGCCAACGATGAAGGAAAATGAAC
TCATGAAATAGGCAGCTACATCGCGTAATCTACACTGTCGCCGCGTGATC
CCTTCTTTCCCATCTTCTGCCTTTTTTGTGTCGTATCTATTTTGTGTCTC
TGACCTGTGTTTGCAGCTGACAACGACTTGGCAGGACCATTGGACTATCT
TGACTAGCATGGCGAGACATGCCTTCGTTGGCGTCTTCTACGGGTCGTTA
TGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11228:645..5600-

>mRNA_H-paniculata_contig11228.784.1 ID=mRNA_H-paniculata_contig11228.784.1|Name=mRNA_H-paniculata_contig11228.784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2478bp|location=Sequence derived from alignment at H-paniculata_contig11228:645..5600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAGCGCACATGTTGCGACTCTGACAGTGAGACAGACGCTGGATTTTGC
CGCTAAACTGCGTATGCCATCAACCACTACAGCGCGCGACAGGGCCAAGA
GAGTGGCCTCCATGGTCGCCATGCTCGGTCTTGAGGGATAGCGCACATGT
TGCGACTCTGACAGTGAGACAGACGCTGGATTTTGCCGCTAAACTGCGTA
TGCCATCAACCACTACAGCGCGCGACAGGGCCAAGAGAGTGGCCTCCATG
GTCGCCATGCTCGGTCTTGAGGGAGTGTTGGAAACACAGGTGGGAAGTGA
AACGAAACGCGGCATCAGCGGTGGCGAGCTGAAACGGCTGAGCATTGCAG
TGGAAGCCATGGATTTGCCGGGTCTGCTCCTCCTGGACGAGCCGACATCA
GGAGTGTTGGAAACACAGGTGGGAAGTGAAACGAAACGCGGCATCAGCGG
TGGCGAGCTGAAACGGCTGAGCATTGCAGTGGAAGCCATGGATTTGCCGG
GTCTGCTCCTCCTGGACGAGCCGACATCAGGGCTAGACGCGACGACAGCA
CTAGATGTTTTGACTGGAGTGCGCGAGTTGGCCAACCTCGGCCGTACCGT
GGTGATGAGCCTTCACCAGCCTTCCCCGGAGATGTTTGGGCTATTGGATA
AGTGTCTTCTGCTCACGAGGGGAGGCTCGCTTGCGTACTTTGGCAGGGCG
GATTGGGCTAGACGCGACGACAGCACTAGATGTTTTGACTGGAGTGCGCG
AGTTGGCCAACCTCGGCCGTACCGTGGTGATGAGCCTTCACCAGCCTTCC
CCGGAGATGTTTGGGCTATTGGATAAGTGTCTTCTGCTCACGAGGGGAGG
CTCGCTTGCGTACTTTGGCAGGGCGGATTGCGCGCTGGCGTATTTTGCAT
CGATCGGCCTTCGGCCGCCGCCGTCCTGCGAGAACGATCCGGCGGCGTTC
CTGTTGTCAATTGCCTCGGCCGCCCTACCCATGGGTGTAACTGTTCCCCC
TTCCCCCGACGATGGGACATCGGGAGGAGGAAGAGTAGAAGGCAGGGCGA
CTGCTTCCGACGGGCGTAATCTCGACAATGACGGGGGTGTTGCTCTAGCG
CTCGATACCGGAATTGGATATGTTGGCGTGGATGCTAGAGCGAGTGTTGT
GGTAGGAACAGGAGAGGGCGATTTCGGGACAGGAATAGAAAGACATGCCG
CGATAACAAGGAACGGACATGATGACGTCAGCGGTGGGAGATTCCCCGCT
GATTACCCTACTACCCCCGTTCTTCCTGATACGCGCTGGCGTATTTTGCA
TCGATCGGCCTTCGGCCGCCGCCGTCCTGCGAGAACGATCCGGCGGCGTT
CCTGTTGTCAATTGCCTCGGCCGCCCTACCCATGGGTGTAACTGTTCCCC
CTTCCCCCGACGATGGGACATCGGGAGGAGGAAGAGTAGAAGGCAGGGCG
ACTGCTTCCGACGGGCGTAATCTCGACAATGACGGGGGTGTTGCTCTAGC
GCTCGATACCGGAATTGGATATGTTGGCGTGGATGCTAGAGCGAGTGTTG
TGGTAGGAACAGGAGAGGGCGATTTCGGGACAGGAATAGAAAGACATGCC
GCGATAACAAGGAACGGACATGATGACGTCAGCGGTGGGAGATTCCCCGC
TGATTACCCTACTACCCCCGTTCTTCCTGATATCGGTGGAAGCACAGAAC
AACTATCGGTTGGCGTCGGCGCTGATATTGCTAGTGGGGATGGCGGTCTC
AGGTCTCGACGAAGAGGCGCACCCGCCTCCGCAGTGGAACTTGAGAATGC
CTTCAATAGGTCCGCGGAGGCGCTGTCGACTAAGTTGGAGGCCGGTAGCT
TAGTGGCGGAAGCGGCTCGTGGTGGCGAAGGTGGATACGGGGTCATGATG
ATCAATGGGAAGAGCAGGACAAGGGCCTCTATGATTTGGATATCATGGGT
GCTGATTCACAGACAGGCGAGCGAGTTGGCAGATTCTAGTTCGGTGGAAG
CACAGAACAACTATCGGTTGGCGTCGGCGCTGATATTGCTAGTGGGGATG
GCGGTCTCAGGTCTCGACGAAGAGGCGCACCCGCCTCCGCAGTGGAACTT
GAGAATGCCTTCAATAGGTCCGCGGAGGCGCTGTCGACTAAGTTGGAGGC
CGGTAGCTTAGTGGCGGAAGCGGCTCGTGGTGGCGAAGGTGGATACGGGG
TCATGATGATCAATGGGAAGAGCAGGACAAGGGCCTCTATGATTTGGATA
TCATGGGTGCTGATTCACAGACAGGCGAGCGAGTTGGCAGATTCTAGTCT
GACAACGACTTGGCAGGACCATTGGACTATCTTGACTAGCATGGCGAGAC
ATGCCTTCGTTGGCGTCTTCTACGGGTCGTTATGGTAACTGACAACGACT
TGGCAGGACCATTGGACTATCTTGACTAGCATGGCGAGACATGCCTTCGT
TGGCGTCTTCTACGGGTCGTTATGGTAA
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