mRNA_H-paniculata_contig11222.779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11222.779.1
Unique NamemRNA_H-paniculata_contig11222.779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A6H5J891_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J891_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 9.090e-34
Identity = 75/118 (63.56%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQEKRLGPIIGQGLEPWGAPSSRMFISTPVHFRCQVFALG 354
            WDI SRMTT +RECSVILTTHSMEEAESLCN IGIMVNGRLRCLGSTQHLK RFG GFEADMKL  PS AAA EV++++    +  IIG  ++     SSR++   P+   C   A G
Sbjct:  302 WDIISRMTTTDRECSVILTTHSMEEAESLCNNIGIMVNGRLRCLGSTQHLKHRFGSGFEADMKLQPPSTAAATEVMQLLMAHGVANIIGDDID-----SSRLW--GPLDICCDGLARG 412
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 9.460e-33
Identity = 74/118 (62.71%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQEKRLGPIIGQGLEPWGAPSSRMFISTPVHFRCQVFALG 354
            WDI SRMTT +RECSVILTTHSMEEAESLCN IGIMVNGRLRCLGSTQHLK RFG GFEADMKL  PS +AA EV++++    +  IIG  ++     SSR++   P+   C   A G
Sbjct: 1951 WDIISRMTTTDRECSVILTTHSMEEAESLCNNIGIMVNGRLRCLGSTQHLKHRFGSGFEADMKLQPPSTSAATEVMQLLMAHGVANIIGDDID-----SSRLW--GPLDICCDGLARG 2061
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A482T2X8_9ARCH (ATP-binding cassette domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2X8_9ARCH)

HSP 1 Score: 102 bits (255), Expect = 5.340e-21
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQEKRLGPIIGQ 270
            W + +RM+T E  CSV+LTTHSMEEAE+LC+ IG+MVNG+L+CLGS QHLK RFG+GFE  +KL  P + A  ++L  +++ RL    GQ
Sbjct:  942 WKVIARMSTLESRCSVMLTTHSMEEAEALCSRIGVMVNGQLQCLGSAQHLKHRFGQGFELTLKLLTPPEDAVHQMLCQLRDARLLTRTGQ 1031
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A7S3UPT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPT9_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 4.190e-18
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQ 240
            WD       ++   +V+LTTHSMEEAE+LC+ IGIMVNGRL C+G+ QHL+ +FGRGFEAD+KL  P  A  + + R ++
Sbjct:   44 WDQIQGARAEDPRRAVVLTTHSMEEAEALCHRIGIMVNGRLCCIGTPQHLRSKFGRGFEADVKLRAPRMADLLPLARALE 123
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 94.0 bits (232), Expect = 6.300e-18
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQE 243
            WD+ ++++T+ ++C+VILTTHSMEE E+LC  IGIMV GRLRCLGS Q LK RFG GF+ ++ L  PS+    + LR + E
Sbjct: 1731 WDVITKISTERQQCAVILTTHSMEECEALCTRIGIMVGGRLRCLGSAQRLKSRFGLGFQLELGLRLPSEEELADGLRRVAE 1811
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A812QND9_SYMMI (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QND9_SYMMI)

HSP 1 Score: 92.8 bits (229), Expect = 1.400e-17
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLH 195
            W + SR++T++  CS+ILTTHSMEEAE+LC  IGIMVNG LRCLGS  HLK RFG G+E D+KL+
Sbjct:  731 WQVISRISTQDAICSIILTTHSMEEAEALCTRIGIMVNGSLRCLGSGTHLKMRFGDGYEVDVKLN 795
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A7S1CQA7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQA7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.480e-17
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQEKRLGPIIGQGLEPW 285
            W++ + +  +    S++LTTHSMEE E+LC+ +GIMV GRLRCLGS QHLK+RFG+G+ A+++L  P +    ++L      R+ P    G  PW
Sbjct: 1077 WNLIASVAAERERVSIVLTTHSMEECEALCSRVGIMVGGRLRCLGSVQHLKQRFGKGYLAEIRLEDPDEDVVKDILH-----RIEPYCANGRVPW 1166
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.150e-17
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAA 216
            W++ SR+ T  ++C+++LTTHSMEEAE+LC  IGIMV GRL+CLGS QHLK RFG G++ ++    P+ AAA
Sbjct: 2096 WEVISRIVTTNKQCALVLTTHSMEEAEALCQRIGIMVGGRLQCLGSAQHLKSRFGSGYQLEVTAALPTSAAA 2167
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BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: D8MBQ7_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MBQ7_BLAHO)

HSP 1 Score: 92.0 bits (227), Expect = 2.770e-17
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGFEADMKLHRPSDAAAMEVLRVMQEK 246
            WDI S ++ K +EC++I+TTHSMEEAE+LC  +GIMV GRLRC G+ Q LK +FG G+  + K   P+D    EV R +  K
Sbjct: 1318 WDIISMVSAKRKECTIIITTHSMEEAEALCTKVGIMVGGRLRCFGTIQDLKSKFGHGYTLNAKFCEPTDEEVEEVKRTLPNK 1399
[Close]
BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.430e-17
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 WDISSRMTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGRGF--EADMKLHRPSDAAAM 219
            W++  R+ T+ +EC++ILTTHSMEE E+LC  IGIMV GRLRCLG++QHLK RFG+GF  EA +K   P +  AM
Sbjct:  852 WNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAM 926
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11222.779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J891_9PHAE9.090e-3463.56ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FL55_ECTSI9.460e-3362.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482T2X8_9ARCH5.340e-2155.56ATP-binding cassette domain-containing protein n=1... [more]
A0A7S3UPT9_HETAK4.190e-1852.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XYR3_HETAK6.300e-1854.32Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A812QND9_SYMMI1.400e-1766.15ABCA1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1CQA7_9STRA1.480e-1744.21Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A835YSC0_9STRA2.150e-1756.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8MBQ7_BLAHO2.770e-1751.22Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A6H5L5M8_9PHAE6.430e-1758.67ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11222contigH-paniculata_contig11222:4625..5853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue3.3e-27
Seed eggNOG ortholog2880.D7FL55
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size810
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11222.779.1prot_H-paniculata_contig11222.779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11222 5048..5835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.4440572-UTR-H-paniculata_contig11222:4624..50471622928826.4440572-UTR-H-paniculata_contig11222:4624..5047Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11222 4625..5047 -
1691480635.7468064-UTR-H-paniculata_contig11222:4624..50471691480635.7468064-UTR-H-paniculata_contig11222:4624..5047Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11222 4625..5047 -
1622928826.4783154-UTR-H-paniculata_contig11222:5835..58531622928826.4783154-UTR-H-paniculata_contig11222:5835..5853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11222 5836..5853 -
1691480635.7735505-UTR-H-paniculata_contig11222:5835..58531691480635.7735505-UTR-H-paniculata_contig11222:5835..5853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11222 5836..5853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.4569547-CDS-H-paniculata_contig11222:5047..53261622928826.4569547-CDS-H-paniculata_contig11222:5047..5326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11222 5048..5326 -
1691480635.758302-CDS-H-paniculata_contig11222:5047..53261691480635.758302-CDS-H-paniculata_contig11222:5047..5326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11222 5048..5326 -
1622928826.468308-CDS-H-paniculata_contig11222:5745..58351622928826.468308-CDS-H-paniculata_contig11222:5745..5835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11222 5746..5835 -
1691480635.7664337-CDS-H-paniculata_contig11222:5745..58351691480635.7664337-CDS-H-paniculata_contig11222:5745..5835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11222 5746..5835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11222.779.1

>prot_H-paniculata_contig11222.779.1 ID=prot_H-paniculata_contig11222.779.1|Name=mRNA_H-paniculata_contig11222.779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MTTKERECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKRRFGR
GFEADMKLHRPSDAAAMEVLRVMQEKRLGPIIGQGLEPWGAPSSRMFIST
PVHFRCQVFALGVSVVNILRMS*
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mRNA from alignment at H-paniculata_contig11222:4625..5853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11222.779.1 ID=mRNA_H-paniculata_contig11222.779.1|Name=mRNA_H-paniculata_contig11222.779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1229bp|location=Sequence derived from alignment at H-paniculata_contig11222:4625..5853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGACATAAGCAGCCGCATGACTACGAAGGAAAGGGAATGCAGCGTTAT
CCTCACGACGCACAGTATGGAGGAGGCGGAGTCCCTCTGCAACATAATTG
GAATTATGGTGAGATTCGTTGGGAATATCTTAAAAACGTCCGAAGTGTGC
GACATGCTCGTATCAAGAGCCTTGTAGGCCTCAGGAAGGCTAGACGATGT
CTTACTTCATTGGTAGAGAACTCTCAACTACAAGCTGGGAGTGTGCTACA
GGCCTGTAAAATGTTCGTGTTCGAAAGCACGACGGAATTACGCTGGGATT
GCTTTCATTCCACTTTCGCCTTGCCCGAGGCGATGCCATCCGTTTTTGCA
GACTCGAACCTGCACGGCCATGCTCATTTTCATTGCTAAGCATTTAATAA
GTATCCAAGTCCGTTGGAATTTGCGCATCACACTCACCGGCTTCTGTTCG
TATATGGATCTTCTAGCGCTAGTTGTCAGCTGTAAGTGAAGCGCTGTTAC
TACCAACGGACGAACGGACTAAATCAGGTGAACGGAAGGCTTCGTTGTTT
GGGCTCAACGCAGCACCTCAAGCGTCGGTTCGGCAGGGGGTTCGAGGCGG
ACATGAAGCTACACCGGCCTTCGGATGCGGCGGCCATGGAGGTGTTACGT
GTGATGCAAGAAAAGCGGCTTGGGCCTATCATCGGCCAAGGTTTAGAACC
GTGGGGAGCACCTTCGAGCCGAATGTTTATATCAACACCTGTACATTTTC
GGTGTCAAGTGTTTGCTTTGGGAGTAAGTGTGGTTAATATTTTGAGGATG
AGTTAATGGTTAATGGCAATTCCGTTCAACCGTACGGAGAATGATGCATA
TCGCGTAGGTATCAAAGGGTTCATCGGTGGATCATTGTTTCATTTGGACG
TGCCTTATCATCCGTGCCTCGAGAACCTAGACAAAATAGTTCGACACGAT
GTGTGATGTTCTTGGCATACAACGGGACAGAGTACTTACCGTTCTGATGA
GCGACAGAAGCGTTGCACCGAGACTGGTTTTACATGGGGCTACACTAGGG
TTTTGATTCGCGCTTGCTCAGTACGGGATACGAAGAAAATCTTTCGTGAA
GCTGTTGTACTTACTCTTGGTAGTGGTTGACAACTTAACCGCAGCTGCTA
GAACTCACGGTACGAGTCGACCTTGTATAGCGTGTGTAAACGGTGGTTTG
TCTCGCGTTCGCTGCGTTCTGGAATCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11222:4625..5853-

>mRNA_H-paniculata_contig11222.779.1 ID=mRNA_H-paniculata_contig11222.779.1|Name=mRNA_H-paniculata_contig11222.779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig11222:4625..5853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTACGAAGGAAAGGGAATGCAGCGTTATCCTCACGACGCACAGTAT
GGAGGAGGCGGAGTCCCTCTGCAACATAATTGGAATTATGATGACTACGA
AGGAAAGGGAATGCAGCGTTATCCTCACGACGCACAGTATGGAGGAGGCG
GAGTCCCTCTGCAACATAATTGGAATTATGGTGAACGGAAGGCTTCGTTG
TTTGGGCTCAACGCAGCACCTCAAGCGTCGGTTCGGCAGGGGGTTCGAGG
CGGACATGAAGCTACACCGGCCTTCGGATGCGGCGGCCATGGAGGTGTTA
CGTGTGATGCAAGAAAAGCGGCTTGGGCCTATCATCGGCCAAGGTTTAGA
ACCGTGGGGAGCACCTTCGAGCCGAATGTTTATATCAACACCTGTACATT
TTCGGTGTCAAGTGTTTGCTTTGGGAGTAAGTGTGGTTAATATTTTGAGG
ATGAGTTAAGTGAACGGAAGGCTTCGTTGTTTGGGCTCAACGCAGCACCT
CAAGCGTCGGTTCGGCAGGGGGTTCGAGGCGGACATGAAGCTACACCGGC
CTTCGGATGCGGCGGCCATGGAGGTGTTACGTGTGATGCAAGAAAAGCGG
CTTGGGCCTATCATCGGCCAAGGTTTAGAACCGTGGGGAGCACCTTCGAG
CCGAATGTTTATATCAACACCTGTACATTTTCGGTGTCAAGTGTTTGCTT
TGGGAGTAAGTGTGGTTAATATTTTGAGGATGAGTTAA
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