mRNA_H-paniculata_contig28555.7777.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28555.7777.1
Unique NamemRNA_H-paniculata_contig28555.7777.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig28555.7777.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.830e-26
Identity = 82/232 (35.34%), Postives = 117/232 (50.43%), Query Frame = 1 
Query: 1213 EAVERGGADGLGGAVLFADLGRRVTAHFDRSDQASAIKRLSSYTVVTGVPFVDYLRGFKSLVSGLSGAGRKNAPTDGMVQSYVRTSIAQQFPTLMTSLYQGDLASRDIPYASVDAMWTAFIHTQSNTTPAIRGASSSSVISQPAAEPPLVHTTSSSVGARNNARPSKNSSTGWTPNSLRSNGS--------VMSVGENPDPFTAAFDAWPAAEETWDQVFVTTTRWETTDPP 1884
            + V+R   DG  G   F  L R ++  FD  D+  +  RL  + V  G  F DYLR F+ LVS ++G+ R  AP+  MV   VR S+++QFP+L   LY GDLA+   P+ S+DAMW AF    +N TPAI G+   S+ S P +  P               R S+N +T   P+  R+ GS        V S     DPF+  ++AWPA +  W  V+  ++ +  T  P
Sbjct:  117 QQVKRRLDDGATGPEAFTLLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYLRAFRLLVSSVTGSERVLAPSVSMVLEIVRNSVSKQFPSLAPMLYPGDLATAVTPFDSIDAMWQAFAPLATNKTPAIGGSEYFSLSSTPGSSQP---------------RRSQNRATAPAPSGRRAQGSAHNPVVLAVQSQDGGNDPFSRDYNAWPAKQGDWSDVYQVSSSFRNTGDP 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28555.7777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE7.830e-2635.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28555contigH-paniculata_contig28555:34..2607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2574
Cds size2169
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28555.7777.1prot_H-paniculata_contig28555.7777.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28555 244..2412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.9962125-UTR-H-paniculata_contig28555:33..2431622929867.9962125-UTR-H-paniculata_contig28555:33..243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28555 34..243 +
1691481046.374951-UTR-H-paniculata_contig28555:33..2431691481046.374951-UTR-H-paniculata_contig28555:33..243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28555 34..243 +
1622929868.0223787-UTR-H-paniculata_contig28555:2412..26071622929868.0223787-UTR-H-paniculata_contig28555:2412..2607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28555 2413..2607 +
1691481046.3939345-UTR-H-paniculata_contig28555:2412..26071691481046.3939345-UTR-H-paniculata_contig28555:2412..2607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28555 2413..2607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.0086694-CDS-H-paniculata_contig28555:243..24121622929868.0086694-CDS-H-paniculata_contig28555:243..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28555 244..2412 +
1691481046.3846996-CDS-H-paniculata_contig28555:243..24121691481046.3846996-CDS-H-paniculata_contig28555:243..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28555 244..2412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28555.7777.1

>prot_H-paniculata_contig28555.7777.1 ID=prot_H-paniculata_contig28555.7777.1|Name=mRNA_H-paniculata_contig28555.7777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=723bp
MRLMTLYGEFPTGNPLRCSPVAWANIRGPAYSMAGLLSVNPLPHLSLQDT
KVCHVLSHVPRSDPRTADCPYTAAARALLRVLRCAVHDAALAARHTLNQD
TSRGDNGDHRNGRGSNNDSGGRRNSGRRPTITRSGSETNSGLSGDGRGRN
RVDITTDGVRRCTQPTPSLEVAAARVLGLSEDDRTDRPHSSLSAHARATA
IEVANPEARKAAEIVQAQTAADALKATSDAARVAAIQREYVKIDTKHIWF
VDPMPPSSTEDTGLYTANLLKSIQRALANILELADVTGKQKFSSPTWVYG
WHTPLHKAMRRACKKSTFSPSDPTSLTQTIDSFFEAVERGGADGLGGAVL
FADLGRRVTAHFDRSDQASAIKRLSSYTVVTGVPFVDYLRGFKSLVSGLS
GAGRKNAPTDGMVQSYVRTSIAQQFPTLMTSLYQGDLASRDIPYASVDAM
WTAFIHTQSNTTPAIRGASSSSVISQPAAEPPLVHTTSSSVGARNNARPS
KNSSTGWTPNSLRSNGSVMSVGENPDPFTAAFDAWPAAEETWDQVFVTTT
RWETTDPPLWTHYYLQLIAKMLFLNTVTPALIAVPLATAFVNALNIAVMC
LDSLTLTSNAMKLHFAVGKKGSALTAPVVIRTGTRVVGIPITTIDETTVI
PMPTPVIPLTTSTELAPPPTPAHRFVRVKLNITPTPTTASLASLSRTGPT
PHIPSMAALRLLRLSTHSWRPL*
back to top

mRNA from alignment at H-paniculata_contig28555:34..2607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28555.7777.1 ID=mRNA_H-paniculata_contig28555.7777.1|Name=mRNA_H-paniculata_contig28555.7777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2574bp|location=Sequence derived from alignment at H-paniculata_contig28555:34..2607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCCCGTGCCGAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTGCG
CTTTGTTGGCCAGCCGTCCAATGATGGACACAGGACCATCTCGCCGACGC
CGCCCCCGCTTGCCCAGACACCCACCGTTTCACGACCTGTGTCAGCTCTC
CTCTCCGTCCCTGAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACGCC
CTTCCTTGACATGCGCCTGATGACTCTATATGGTGAGTTCCCGACGGGGA
ATCCTTTGCGGTGCTCCCCAGTAGCATGGGCCAACATCCGGGGTCCGGCT
TATTCTATGGCCGGATTACTTTCTGTGAACCCTCTCCCGCACTTGTCGCT
TCAGGACACAAAGGTGTGCCACGTCCTCAGCCATGTACCGCGCTCCGATC
CGCGCACGGCGGATTGTCCGTACACCGCGGCCGCGCGTGCTTTACTGCGC
GTCTTACGCTGCGCGGTCCATGATGCGGCGCTTGCTGCTCGGCACACCCT
GAATCAGGACACCTCGCGGGGCGACAACGGAGATCACCGGAATGGGCGTG
GCTCCAACAACGACTCTGGCGGTCGCCGGAACTCGGGACGCCGCCCAACC
ATCACACGATCCGGGAGCGAAACGAATTCGGGATTATCGGGAGACGGGCG
CGGTCGCAACCGCGTCGACATCACTACAGACGGAGTTCGAAGGTGCACAC
AGCCCACTCCTAGTTTAGAAGTTGCAGCTGCTCGTGTTCTCGGCCTTTCC
GAGGATGATCGTACTGATAGACCTCACTCCTCCTTGTCCGCTCATGCTCG
CGCTACCGCTATAGAAGTAGCAAATCCCGAAGCACGTAAGGCCGCAGAAA
TAGTACAGGCACAAACGGCCGCTGATGCGTTGAAGGCTACGAGCGACGCC
GCACGTGTAGCCGCAATTCAGAGAGAGTACGTAAAAATCGATACAAAACA
CATTTGGTTTGTTGACCCTATGCCCCCGTCTAGTACTGAAGACACGGGCC
TATACACGGCCAATTTATTAAAATCAATTCAGCGTGCTTTAGCGAACATT
TTGGAACTCGCAGACGTCACCGGGAAGCAGAAATTTTCTTCCCCCACTTG
GGTGTATGGTTGGCATACTCCCCTGCACAAAGCCATGCGTAGAGCATGTA
AGAAAAGTACCTTTTCCCCCTCCGATCCTACCTCTCTTACACAGACGATT
GATAGTTTCTTCGAAGCGGTGGAACGAGGTGGCGCCGACGGCCTCGGAGG
CGCCGTTTTATTCGCAGATCTGGGTCGGCGTGTGACGGCACACTTTGACC
GTTCTGACCAGGCTAGCGCTATTAAGCGTTTAAGTTCTTACACAGTAGTT
ACAGGTGTGCCTTTCGTAGACTACTTACGCGGCTTTAAGAGCCTGGTTTC
GGGACTTTCTGGCGCTGGCCGAAAGAACGCTCCCACGGATGGTATGGTAC
AGAGCTATGTGCGTACTAGCATCGCCCAGCAATTTCCTACCTTGATGACA
TCGTTGTACCAAGGTGACTTGGCTTCGCGTGATATACCGTATGCCTCTGT
AGACGCCATGTGGACAGCCTTTATCCACACACAATCTAACACCACACCAG
CTATTCGTGGCGCATCCTCTTCTTCTGTTATTTCGCAACCAGCAGCGGAA
CCGCCGCTAGTTCACACTACTTCTAGTAGTGTCGGGGCGCGCAATAATGC
ACGCCCCTCTAAAAACTCTTCGACGGGTTGGACCCCCAATTCCCTGCGTA
GTAACGGTTCTGTGATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCT
GCGTTCGACGCGTGGCCTGCTGCAGAAGAAACGTGGGATCAGGTTTTTGT
TACAACGACACGTTGGGAAACTACTGACCCTCCTTTATGGACCCACTATT
ATCTGCAGCTGATCGCGAAGATGCTTTTTCTAAACACCGTAACACCTGCC
TTAATTGCGGTACCACTGGCCACAGCATTCGTGAATGCACTGAATATTGC
CGTAATGTGTTTGGACTCATTAACCCTGACCTCCAACGCAATGAAGCTGC
ATTTCGCCGTTGGCAAGAAAGGATCCGCTCTTACCGCTCCGGTCGTAATT
CGAACCGGCACTCGCGTGGTAGGAATTCCAATAACCACCATCGACGAAAC
CACGGTAATACCCATGCCAACACCGGTGATTCCTCTCACCACCAGCACGG
AGCTCGCGCCTCCTCCAACGCCGGCACACAGGTTCGTCAGGGTCAAGCTC
AACATAACGCCAACCCCAACAACCGCAAGCCTGGCGTCTTTGTCACGGAC
AGGACCGACACCGCATATCCCCAGCATGGCGGCCCTCCGTCTCCTACGCC
TGTCCACGCACTCTTGGAGACCTCTTTAAATGCACCGCTTTCTATAGATG
TCAAGGCAAGTACTGACACTACTGATGAATTGCGGGCAGATGGGGTATTT
TCCCCCGACTCTCGTCCTTTTCGCTTTTGGCGTTTGCCTCATGGCCGCCA
GGCTGTTCCATCGGACTTTTCAACAACTAACTCGGAGGTTTTTGTGGCCG
ACACCGGCGTCTCTGAAACGCCAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28555:34..2607+

>mRNA_H-paniculata_contig28555.7777.1 ID=mRNA_H-paniculata_contig28555.7777.1|Name=mRNA_H-paniculata_contig28555.7777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4338bp|location=Sequence derived from alignment at H-paniculata_contig28555:34..2607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCTGATGACTCTATATGGTGAGTTCCCGACGGGGAATCCTTTGCG
GTGCTCCCCAGTAGCATGGGCCAACATCCGGGGTCCGGCTTATTCTATGG
CCGGATTACTTTCTGTGAACCCTCTCCCGCACTTGTCGCTTCAGGACACA
AAGGTGTGCCACGTCCTCAGCCATGTACCGCGCTCCGATCCGCGCACGGC
GGATTGTCCGTACACCGCGGCCGCGCGTGCTTTACTGCGCGTCTTACGCT
GCGCGGTCCATGATGCGGCGCTTGCTGCTCGGCACACCCTGAATCAGGAC
ACCTCGCGGGGCGACAACGGAGATCACCGGAATGGGCGTGGCTCCAACAA
CGACTCTGGCGGTCGCCGGAACTCGGGACGCCGCCCAACCATCACACGAT
CCGGGAGCGAAACGAATTCGGGATTATCGGGAGACGGGCGCGGTCGCAAC
CGCGTCGACATCACTACAGACGGAGTTCGAAGGTGCACACAGCCCACTCC
TAGTTTAGAAGTTGCAGCTGCTCGTGTTCTCGGCCTTTCCGAGGATGATC
GTACTGATAGACCTCACTCCTCCTTGTCCGCTCATGCTCGCGCTACCGCT
ATAGAAGTAGCAAATCCCGAAGCACGTAAGGCCGCAGAAATAGTACAGGC
ACAAACGGCCGCTGATGCGTTGAAGGCTACGAGCGACGCCGCACGTGTAG
CCGCAATTCAGAGAGAGTACGTAAAAATCGATACAAAACACATTTGGTTT
GTTGACCCTATGCCCCCGTCTAGTACTGAAGACACGGGCCTATACACGGC
CAATTTATTAAAATCAATTCAGCGTGCTTTAGCGAACATTTTGGAACTCG
CAGACGTCACCGGGAAGCAGAAATTTTCTTCCCCCACTTGGGTGTATGGT
TGGCATACTCCCCTGCACAAAGCCATGCGTAGAGCATGTAAGAAAAGTAC
CTTTTCCCCCTCCGATCCTACCTCTCTTACACAGACGATTGATAGTTTCT
TCGAAGCGGTGGAACGAGGTGGCGCCGACGGCCTCGGAGGCGCCGTTTTA
TTCGCAGATCTGGGTCGGCGTGTGACGGCACACTTTGACCGTTCTGACCA
GGCTAGCGCTATTAAGCGTTTAAGTTCTTACACAGTAGTTACAGGTGTGC
CTTTCGTAGACTACTTACGCGGCTTTAAGAGCCTGGTTTCGGGACTTTCT
GGCGCTGGCCGAAAGAACGCTCCCACGGATGGTATGGTACAGAGCTATGT
GCGTACTAGCATCGCCCAGCAATTTCCTACCTTGATGACATCGTTGTACC
AAGGTGACTTGGCTTCGCGTGATATACCGTATGCCTCTGTAGACGCCATG
TGGACAGCCTTTATCCACACACAATCTAACACCACACCAGCTATTCGTGG
CGCATCCTCTTCTTCTGTTATTTCGCAACCAGCAGCGGAACCGCCGCTAG
TTCACACTACTTCTAGTAGTGTCGGGGCGCGCAATAATGCACGCCCCTCT
AAAAACTCTTCGACGGGTTGGACCCCCAATTCCCTGCGTAGTAACGGTTC
TGTGATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCTGCGTTCGACG
CGTGGCCTGCTGCAGAAGAAACGTGGGATCAGGTTTTTGTTACAACGACA
CGTTGGGAAACTACTGACCCTCCTTTATGGACCCACTATTATCTGCAGCT
GATCGCGAAGATGCTTTTTCTAAACACCGTAACACCTGCCTTAATTGCGG
TACCACTGGCCACAGCATTCGTGAATGCACTGAATATTGCCGTAATGTGT
TTGGACTCATTAACCCTGACCTCCAACGCAATGAAGCTGCATTTCGCCGT
TGGCAAGAAAGGATCCGCTCTTACCGCTCCGGTCGTAATTCGAACCGGCA
CTCGCGTGGTAGGAATTCCAATAACCACCATCGACGAAACCACGGTAATA
CCCATGCCAACACCGGTGATTCCTCTCACCACCAGCACGGAGCTCGCGCC
TCCTCCAACGCCGGCACACAGGTTCGTCAGGGTCAAGCTCAACATAACGC
CAACCCCAACAACCGCAAGCCTGGCGTCTTTGTCACGGACAGGACCGACA
CCGCATATCCCCAGCATGGCGGCCCTCCGTCTCCTACGCCTGTCCACGCA
CTCTTGGAGACCTCTTTAAATGCGCCTGATGACTCTATATGGTGAGTTCC
CGACGGGGAATCCTTTGCGGTGCTCCCCAGTAGCATGGGCCAACATCCGG
GGTCCGGCTTATTCTATGGCCGGATTACTTTCTGTGAACCCTCTCCCGCA
CTTGTCGCTTCAGGACACAAAGGTGTGCCACGTCCTCAGCCATGTACCGC
GCTCCGATCCGCGCACGGCGGATTGTCCGTACACCGCGGCCGCGCGTGCT
TTACTGCGCGTCTTACGCTGCGCGGTCCATGATGCGGCGCTTGCTGCTCG
GCACACCCTGAATCAGGACACCTCGCGGGGCGACAACGGAGATCACCGGA
ATGGGCGTGGCTCCAACAACGACTCTGGCGGTCGCCGGAACTCGGGACGC
CGCCCAACCATCACACGATCCGGGAGCGAAACGAATTCGGGATTATCGGG
AGACGGGCGCGGTCGCAACCGCGTCGACATCACTACAGACGGAGTTCGAA
GGTGCACACAGCCCACTCCTAGTTTAGAAGTTGCAGCTGCTCGTGTTCTC
GGCCTTTCCGAGGATGATCGTACTGATAGACCTCACTCCTCCTTGTCCGC
TCATGCTCGCGCTACCGCTATAGAAGTAGCAAATCCCGAAGCACGTAAGG
CCGCAGAAATAGTACAGGCACAAACGGCCGCTGATGCGTTGAAGGCTACG
AGCGACGCCGCACGTGTAGCCGCAATTCAGAGAGAGTACGTAAAAATCGA
TACAAAACACATTTGGTTTGTTGACCCTATGCCCCCGTCTAGTACTGAAG
ACACGGGCCTATACACGGCCAATTTATTAAAATCAATTCAGCGTGCTTTA
GCGAACATTTTGGAACTCGCAGACGTCACCGGGAAGCAGAAATTTTCTTC
CCCCACTTGGGTGTATGGTTGGCATACTCCCCTGCACAAAGCCATGCGTA
GAGCATGTAAGAAAAGTACCTTTTCCCCCTCCGATCCTACCTCTCTTACA
CAGACGATTGATAGTTTCTTCGAAGCGGTGGAACGAGGTGGCGCCGACGG
CCTCGGAGGCGCCGTTTTATTCGCAGATCTGGGTCGGCGTGTGACGGCAC
ACTTTGACCGTTCTGACCAGGCTAGCGCTATTAAGCGTTTAAGTTCTTAC
ACAGTAGTTACAGGTGTGCCTTTCGTAGACTACTTACGCGGCTTTAAGAG
CCTGGTTTCGGGACTTTCTGGCGCTGGCCGAAAGAACGCTCCCACGGATG
GTATGGTACAGAGCTATGTGCGTACTAGCATCGCCCAGCAATTTCCTACC
TTGATGACATCGTTGTACCAAGGTGACTTGGCTTCGCGTGATATACCGTA
TGCCTCTGTAGACGCCATGTGGACAGCCTTTATCCACACACAATCTAACA
CCACACCAGCTATTCGTGGCGCATCCTCTTCTTCTGTTATTTCGCAACCA
GCAGCGGAACCGCCGCTAGTTCACACTACTTCTAGTAGTGTCGGGGCGCG
CAATAATGCACGCCCCTCTAAAAACTCTTCGACGGGTTGGACCCCCAATT
CCCTGCGTAGTAACGGTTCTGTGATGTCTGTTGGTGAAAACCCCGATCCC
TTCACGGCTGCGTTCGACGCGTGGCCTGCTGCAGAAGAAACGTGGGATCA
GGTTTTTGTTACAACGACACGTTGGGAAACTACTGACCCTCCTTTATGGA
CCCACTATTATCTGCAGCTGATCGCGAAGATGCTTTTTCTAAACACCGTA
ACACCTGCCTTAATTGCGGTACCACTGGCCACAGCATTCGTGAATGCACT
GAATATTGCCGTAATGTGTTTGGACTCATTAACCCTGACCTCCAACGCAA
TGAAGCTGCATTTCGCCGTTGGCAAGAAAGGATCCGCTCTTACCGCTCCG
GTCGTAATTCGAACCGGCACTCGCGTGGTAGGAATTCCAATAACCACCAT
CGACGAAACCACGGTAATACCCATGCCAACACCGGTGATTCCTCTCACCA
CCAGCACGGAGCTCGCGCCTCCTCCAACGCCGGCACACAGGTTCGTCAGG
GTCAAGCTCAACATAACGCCAACCCCAACAACCGCAAGCCTGGCGTCTTT
GTCACGGACAGGACCGACACCGCATATCCCCAGCATGGCGGCCCTCCGTC
TCCTACGCCTGTCCACGCACTCTTGGAGACCTCTTTAA
back to top