mRNA_H-paniculata_contig28484.7767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig28484.7767.1
Unique Name	mRNA_H-paniculata_contig28484.7767.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: D7FNT2_ECTSI (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT2_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.700e-39
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLEDAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            KVVLYILLVMHWVACGWHLLAD+EDA+LSWIVKDGLE A AS LYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV
Sbjct:  322 KVVLYILLVMHWVACGWHLLADMEDADLSWIVKDGLEDAPASTLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 399

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A6P0RH86_9CYAN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Okeania sp. SIO3I5 TaxID=2607805 RepID=A0A6P0RH86_9CYAN)

HSP 1 Score: 75.9 bits (185), Expect = 3.420e-14
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLEDAE-LSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K+V++I L+ HWVACGW L+  LE     SW++   LE A     Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  149 KLVIFIALITHWVACGWFLIGSLESRYGESWLINKSLESASTKTQYMNSLYWAITTLTTVGYGDITPATEIEIIFTLIV 227

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A6L9ZYB5_9CYAN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Okeania sp. SIO3B5 TaxID=2607811 RepID=A0A6L9ZYB5_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 1

Query:   22 HKVVLYILLVMHWVACGWHLLADLE-DAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            +K+V+ I+L+ HWVAC W +L   E + E SW++++ L+ A     Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  148 YKLVIIIILITHWVACIWFMLGSWESNGENSWLIRNSLQSASRRTQYINSLYWAITTLTTVGYGDIIPTTEIEIIFTLVV 227

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A6P0NX92_9CYAN (Ion_trans domain-containing protein n=1 Tax=Okeania sp. SIO2C2 TaxID=2607787 RepID=A0A6P0NX92_9CYAN)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLE-DAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K+V+ I+L+ HWVAC W ++   E +AE SW++ + L+ A     Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:   34 KLVILIILITHWVACIWFMIGSWESNAENSWLISNYLQSASIRTQYINSLYWAITTLTTVGYGDITPTTEIEIIFTLVV 112

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: UPI0019C5C2BA (ion transporter n=1 Tax=Okeania sp. KiyG1 TaxID=2720165 RepID=UPI0019C5C2BA)

HSP 1 Score: 73.2 bits (178), Expect = 3.000e-13
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLE-DAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K+V+ I+L+ HWVAC W ++   E +AE SW++ + L+ A  +  Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  151 KLVIVIILITHWVACIWFMIGSWESNAENSWLISNSLQSATITTQYINSLYWAITTLTTVGYGDITPTTEIEIMFTLVV 229

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A846AMH9_9CYAN (Cyclic nucleotide-binding protein n=1 Tax=Okeania sp. SIO2C9 TaxID=2607791 RepID=A0A846AMH9_9CYAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.360e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLE-DAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K+V+ I+L+ HWVAC W ++   E + E SW++ + L+ A  +  Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  151 KLVIIIILITHWVACIWFMIGRWESNTENSWLISNSLQSASITTQYINSLYWAITTLTTVGYGDITPTTEIEIMFTLVV 229

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A846G2R8_9CYAN (Cyclic nucleotide-binding domain-containing protein n=3 Tax=unclassified Okeania TaxID=2634635 RepID=A0A846G2R8_9CYAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.480e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLE-DAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K+V+ I+L+ HWVAC W ++   + +AE SW++ + L+ A     Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  149 KLVILIILITHWVACIWFMIGSWKSNAENSWLISNSLQSASRRTQYINSLYWAITTLTTVGYGDITPATEIEIIFTLVV 227

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A1R2C8N0_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C8N0_9CILI)

HSP 1 Score: 70.1 bits (170), Expect = 3.900e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1

Query:   46 LVMHWVACGWHLLADLEDAELS-WIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            +V H +AC WH  A ++D + + W+ K G+E     ++Y+ S+YWT+TTL+TVGYGDI  S   ER  CI V
Sbjct:  113 IVCHLIACLWHFAATVQDYKYNNWVTKYGIENLSHIEIYMASLYWTITTLATVGYGDITPSNSLERGICIAV 184

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: A0A846CIE2_9CYAN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Okeania sp. SIO2F4 TaxID=2607790 RepID=A0A846CIE2_9CYAN)

HSP 1 Score: 68.9 bits (167), Expect = 9.430e-12
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLEDAE-LSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K+V+ I+L+ HWVAC W ++   E +   SW++   LE A     Y+ S+YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  105 KLVIVIILITHWVACIWFMIGSWESSTGNSWLIAKSLESATRRTQYINSLYWAITTLTTVGYGDITPATEIEIIFTLIV 183

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BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Match: Q10V66_TRIEI (Cyclic nucleotide-binding protein n=1 Tax=Trichodesmium erythraeum (strain IMS101) TaxID=203124 RepID=Q10V66_TRIEI)

HSP 1 Score: 68.2 bits (165), Expect = 1.810e-11
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1

Query:   25 KVVLYILLVMHWVACGWHLLADLE-DAELSWIVKDGLEGAHASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 258
            K++++I L+ HWVACGW L+   E +   SW++   L+       Y+  +YW +TTL+TVGYGDI  +T  E  + ++V
Sbjct:  154 KLIIFIALITHWVACGWFLIGSWESNFGESWLINKSLKSVGTRTQYINCLYWAITTLTTVGYGDITPTTEIEIIFTLMV 232

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig28484.7767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNT2_ECTSI	1.700e-39	93.59	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A6P0RH86_9CYAN	3.420e-14	45.57	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A6L9ZYB5_9CYAN	1.200e-13	42.50	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A6P0NX92_9CYAN	2.290e-13	43.04	Ion_trans domain-containing protein n=1 Tax=Okeani...	[more]
UPI0019C5C2BA	3.000e-13	43.04	ion transporter n=1 Tax=Okeania sp. KiyG1 TaxID=27...	[more]
A0A846AMH9_9CYAN	1.360e-12	41.77	Cyclic nucleotide-binding protein n=1 Tax=Okeania ...	[more]
A0A846G2R8_9CYAN	1.480e-12	41.77	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A1R2C8N0_9CILI	3.900e-12	45.83	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A846CIE2_9CYAN	9.430e-12	41.77	Cyclic nucleotide-binding domain-containing protei...	[more]
Q10V66_TRIEI	1.810e-11	39.24	Cyclic nucleotide-binding protein n=1 Tax=Trichode...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig28484	contig	H-paniculata_contig28484:510..2531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	148.3
Seed ortholog evalue	1.7e-33
Seed eggNOG ortholog	2880.D7FNT2
Hectar predicted targeting category	signal peptide
EggNOG free text desc.	voltage-gated potassium channel activity
EggNOG OGs	KOG0498@1,KOG0498@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	258
Cds size	258
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929866.2951436-CDS-H-paniculata_contig28484:509..622	1622929866.2951436-CDS-H-paniculata_contig28484:509..622	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig28484 510..622 +
1691481045.5357153-CDS-H-paniculata_contig28484:509..622	1691481045.5357153-CDS-H-paniculata_contig28484:509..622	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig28484 510..622 +
1622929866.3109777-CDS-H-paniculata_contig28484:2386..2531	1622929866.3109777-CDS-H-paniculata_contig28484:2386..2531	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig28484 2387..2531 +
1691481045.547611-CDS-H-paniculata_contig28484:2386..2531	1691481045.547611-CDS-H-paniculata_contig28484:2386..2531	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig28484 2387..2531 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig28484.7767.1	prot_H-paniculata_contig28484.7767.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig28484 510..2531 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig28484:510..2531+
coding sequence from alignment at H-paniculata_contig28484:510..2531+

protein sequence of mRNA_H-paniculata_contig28484.7767.1

>prot_H-paniculata_contig28484.7767.1 ID=prot_H-paniculata_contig28484.7767.1|Name=mRNA_H-paniculata_contig28484.7767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
LLAALCVHKVVLYILLVMHWVACGWHLLADLEDAELSWIVKDGLEGAHAS
KLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV

mRNA from alignment at H-paniculata_contig28484:510..2531+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig28484.7767.1 ID=mRNA_H-paniculata_contig28484.7767.1|Name=mRNA_H-paniculata_contig28484.7767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig28484:510..2531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGGCTGCTTTGTGTGTGCACAAGGTGGTGCTGTACATTCTGCTGGT
GATGCACTGGGTAGCGTGCGGGTGGCACTTGCTGGCGGACTTGGAAGACG
CTGAGCTATCGTGGTATGACACATGTTCGCACATCGGATAGGAAGGGACG
CGCCCGAGGGGGGCGGGGGATAAAAACGTTGGATCTGATATTTTGTGTGC
ATGAAATGGTCGAGATTGATACTAAATCTGCGCACTACATAATACATGGT
AGCAACAACATGAGTAGTGTACTTGATGCAGGAGCAAGAAATCCACCACC
AGCTACAATATAGCGATATCACTACTGATTCTCTGCGCGCGCGGGGAGGG
GGAGGTTGCACCAAACACGTTTGTACCTTGCGAATCCTCATTTATTCGTC
GTACTCATCGGTCAAACCACTTCATGTCTTGCCAGGACACATGCCCTTTT
TTGTACACACGCTGAGGTTATGAAGGTCATACTTTATCATGACAGCGTAT
GTTTCTCGGGAAAAAAATATGAAAAAAAAATTAGGTCATGTGTCACGATC
TGTACCACTTCTAGTACACATACCGCATTTTATGCTTGGGGTCATTTTGG
GCGTGGGCCACATTCATGGATGGCTTGACAAGACACACAAATATTCATGA
GAAAACGTCCAGAGAGATATAGAAGGGAGGGAATAATTGTTAATAATACC
AACAGCACAATCAATGCTGTACTACAGTGGACGTACGAGTTTAAGAGCGG
TCTACTCCAGAAAAGTTAATTTTTTTTTATGAGAGGTTCAATTGCCGTGT
CACCAATTTTTGAGATTGAAAAGAGGTCTTAAGCTGTGCAGGCCGAACCT
CTCTTCAATCGACCAGGAATGTGAAAAATGACCAGTGTTGCACATCATCC
ACTTGACATCACCTGGGTTTCAATCAAATTGACTTGAGAGCAGATAACCA
CGAAATATTCTCCTTTTGAACTCCTTTTTATTTTATTCATGAGATGTACA
CAGACTTCTTCCAGCTCAAGGTACAACCGTGACCACGAGTGCGTTTATCC
AACACCATTTACAATTTCTCAGAATTGGTTTTGACGGATTCAAGATGATC
AAGATTTTAAGAGAGAGTTTTTTGGCTTGTCACCACCCTATATTAAATCC
GTGCATCCATCGTATTCGCCTACTTGACGATATTTTGGGGAAAATATTTT
TTATTTTTTCATCTGTTTTTTTTTCGAGTTATAAGGCTGTTTTTTTTTTT
ATTAAACTTAAAAGCAGAGATAAAATAACCGATTTCTTGAGTTGCTCCAT
CTGCGGGGGTACACCTTTCCTGCAGGGAGATTGTACGGGCTTTGGCCTGC
GGTAACTTGTGTCGTCCGACCGCGGATCTGAGCGATTTGAAACGAGGAAA
AGTGAAGAAGCAAGGAGAAGTGGAACATTTGTTGACGGGAAAGAGCACTG
CTTGTCCACCCTTTGGCTGCTTATTTGGTGTTTCTATGGTCTTTTTCTGT
GGGTATGTTGTTGACCGTACGTGGTGAAATTGGAAGACCAACCATGGTTA
GTTAGTTTTGGGAAAACGTCTGGATTATGACTCCTCTTGCCCCGCGTGCT
CTCTCGTTCGCCATAAAATTACGTTGAACGGGTGAAAAAAAAGAGAAGAG
GTGTTGTTGATCATTTAGCCAGAAACATTTATTATCTTGGTGATGGGCAA
AAGTTAAAGGTCTGTTTGAAAGTATTTGATATATACGAAATAATAAAAGA
CAAAAATGTAATGTTGACTCTTTTATATTGACATGCTCCTTTCTTATGTG
TTTTTTTCGTGACTCCCTTCTGTGTCCATCTATATTCTGTGTGTTATGAC
TTTTTTATTTGTGGTTTGGTTGGTCAGGATCGTGAAGGACGGGCTAGAAG
GTGCACACGCCTCCAAGCTGTACGTGACGTCTGTCTACTGGACCGTCACG
ACTCTCTCCACTGTCGGCTATGGGGACATCTTTGCGAGCACCATCGCCGA
ACGAACGTATTGCATCCTGGTG

Coding sequence (CDS) from alignment at H-paniculata_contig28484:510..2531+

>mRNA_H-paniculata_contig28484.7767.1 ID=mRNA_H-paniculata_contig28484.7767.1|Name=mRNA_H-paniculata_contig28484.7767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig28484:510..2531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGGCTGCTTTGTGTGTGCACAAGGTGGTGCTGTACATTCTGCTGGT
GATGCACTGGGTAGCGTGCGGGTGGCACTTGCTGGCGGACTTGGAAGACG
CTGAGCTATCGTGTTGCTGGCTGCTTTGTGTGTGCACAAGGTGGTGCTGT
ACATTCTGCTGGTGATGCACTGGGTAGCGTGCGGGTGGCACTTGCTGGCG
GACTTGGAAGACGCTGAGCTATCGTGGATCGTGAAGGACGGGCTAGAAGG
TGCACACGCCTCCAAGCTGTACGTGACGTCTGTCTACTGGACCGTCACGA
CTCTCTCCACTGTCGGCTATGGGGACATCTTTGCGAGCACCATCGCCGAA
CGAACGTATTGCATCCTGGTGGATCGTGAAGGACGGGCTAGAAGGTGCAC
ACGCCTCCAAGCTGTACGTGACGTCTGTCTACTGGACCGTCACGACTCTC
TCCACTGTCGGCTATGGGGACATCTTTGCGAGCACCATCGCCGAACGAAC
GTATTGCATCCTGGTG