mRNA_H-paniculata_contig2841.7753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2841.7753.1
Unique NamemRNA_H-paniculata_contig2841.7753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2841.7753.1 vs. uniprot
Match: D8LFR7_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFR7_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 1.820e-69
Identity = 141/292 (48.29%), Postives = 189/292 (64.73%), Query Frame = 2 
Query:  131 MAKLSL-WMVATLVSVVGSARRSLA-WSSGPR--AVQLM-PAQGAL-AVESKGSTATARSRYKVEQPHIYSDFNGLKVCVWVDSTPSGEQQSSRSGPFCFDKEEEDLPIEGLDVGSHRLSAAVVAPGDPVIGRKSRLLSPVADTIFEVVLHEEFAATYTWQDVQEWQSLPAGLEIVLPLDGLGKKRARIPPVWQLQKYV-ELSGDDGRTSKGETAVAEKLSGFFVRVNVRPETTVLELRREIARHPRLAGQRIGRVKLLLGGRLLNDLETLVSLDLFNRLRDFAVVVDPMGG 985
            M KL+  WM+  + S+  S RR++A +++G    AV+L+ PA+G +  V ++ + A+A S Y+V Q  + + F+GL+VCVWVDS   G+  +SRSGPFCF+  +++LPI GL+VGSHRLSAAVVAP        ++ +S V      VVL E+FA +Y WQ V  WQS+P GLE+ LPLDG+G+KRAR+PP W+LQ YV E SG                 GFFVR ++R  +TVLELRREIAR PR  G  + RV+L LGGR+L D ET   LDLFNR R+   +VD   G
Sbjct:    1 MRKLAYAWMI--VASLSQSFRRNMASYAAGTTRYAVRLVAPAEGPVFGVATRNAKASAVSAYEVLQEPVGAPFDGLQVCVWVDSMIEGKDTASRSGPFCFEGLQQELPINGLEVGSHRLSAAVVAPTQD---GPTQQISEVTTAQINVVLQEDFAPSYKWQQVYPWQSVPPGLEVQLPLDGVGQKRARVPPSWRLQLYVPEESG----------------GGFFVRTDLRAGSTVLELRREIARQPRFGGGGVERVRLSLGGRVLGDEETAEGLDLFNRQRELVALVDRRPG 271
[Close]
BLAST of mRNA_H-paniculata_contig2841.7753.1 vs. uniprot
Match: A0A836CHB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.050e-33
Identity = 92/242 (38.02%), Postives = 126/242 (52.07%), Query Frame = 2 
Query:  266 KGSTATARSRYKVEQPHIYSDFNGLKVCVWVDSTPSGE-QQSSRSGPFCFDKEEEDLPIEGLDVGSHRLSAAVV----APGDPVIGRKSRLLSPVADTIFEVVLHEEFAATYTWQDVQEWQSLPAGLEIVLPLDGLGKKRARIPPVWQLQKYVE---LSGDDGRTSKGETAVAEKLSGFFVRVNVRPETTVLELRREIARHPRLAGQRIGRVKLLLGGRLLNDLETLVSLDLFNRLRDFAVV 967
            +  TA     Y+V +P +      LKVC+W D    G   Q + SGPFCF + +  + ++ L  G H LSAAVV    A G+ ++     L +  A     V +  +FA TY WQ V+EWQ +P GLE+ LPLDG G++ ARIP  WQLQ +V+   L GD                GFF R  +   TTV +LR+ IA H R     +  V + LGG  + D ET+  LDLFNR ++  +V
Sbjct:   44 ENKTAHGVLHYQVSEPWVEQWNPSLKVCIWGDFLDPGTGAQRAASGPFCFAEPQGAVNMQALGAGLHVLSAAVVQDRSADGETML----ELSAERARHTLRVDVKRDFAPTYAWQPVREWQGVPPGLEVRLPLDGSGERTARIPQPWQLQLFVQDPHLPGD----------------GFFFRQQITGGTTVGDLRQAIASH-REVQLPLELVWMTLGGAPVADHETVKELDLFNRQKELKLV 264
[Close]
BLAST of mRNA_H-paniculata_contig2841.7753.1 vs. uniprot
Match: A0A6U9D208_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U9D208_EMIHU)

HSP 1 Score: 67.8 bits (164), Expect = 4.430e-9
Identity = 68/188 (36.17%), Postives = 89/188 (47.34%), Query Frame = 2 
Query:  434 PIEG-LDVGSHRLSAAVVAPGDPVIGR------KSRLLSPVADTIFEVVLHEEFAATYTWQDVQEWQSLPAGLEIVLPLDGLGKKRARIPPVWQLQKYVELSGDDGRTSKGETAVAEKLSGFFVRVNVRPETTVLELRREIARHPRLAGQRIGRVKLLLGGRLLND-LETLVSLDLFNRLRDFAVVVD 973
            P++G + V +   +A   A GDP +          R  S VA ++ + V       +Y WQ   +  ++PAGLE+ LPLDG    RARIPP WQL  +V    D+ R             GF+ R  VR ETTV ELR   ARH   AG     V L L G  L+D   T   +DLF R     V+V+
Sbjct:   83 PLDGAVLVFADGAAAEEFAAGDPYVAEGIVETWTVREWSAVAGSLLQHVPPPPPFPSYEWQRFADGVAVPAGLEVELPLDGR-PGRARIPPCWQLDVWV----DEAR-------------GFW-RGEVRRETTVGELRSLAARH---AGCSSEAVTLRLDGAPLDDDAATAEQIDLFGRKGALEVLVE 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2841.7753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFR7_ECTSI1.820e-6948.29Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A836CHB5_9STRA8.050e-3338.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U9D208_EMIHU4.430e-936.17Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2841contigH-paniculata_contig2841:14203..16924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue5e-58
Seed eggNOG ortholog2880.D8LFR7
Hectar predicted targeting categorysignal peptide
EggNOG OGs2D4TN@1,2SW8J@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001190.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1464
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2841.7753.1prot_H-paniculata_contig2841.7753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2841 14670..16800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.6816957-UTR-H-paniculata_contig2841:14202..146691622929862.6816957-UTR-H-paniculata_contig2841:14202..14669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2841 14203..14669 -
1691481044.631025-UTR-H-paniculata_contig2841:14202..146691691481044.631025-UTR-H-paniculata_contig2841:14202..14669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2841 14203..14669 -
1622929862.737358-UTR-H-paniculata_contig2841:16800..169241622929862.737358-UTR-H-paniculata_contig2841:16800..16924Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2841 16801..16924 -
1691481044.676598-UTR-H-paniculata_contig2841:16800..169241691481044.676598-UTR-H-paniculata_contig2841:16800..16924Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2841 16801..16924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.6954172-CDS-H-paniculata_contig2841:14669..152011622929862.6954172-CDS-H-paniculata_contig2841:14669..15201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2841 14670..15201 -
1691481044.6433606-CDS-H-paniculata_contig2841:14669..152011691481044.6433606-CDS-H-paniculata_contig2841:14669..15201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2841 14670..15201 -
1622929862.712158-CDS-H-paniculata_contig2841:15358..154801622929862.712158-CDS-H-paniculata_contig2841:15358..15480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2841 15359..15480 -
1691481044.6536183-CDS-H-paniculata_contig2841:15358..154801691481044.6536183-CDS-H-paniculata_contig2841:15358..15480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2841 15359..15480 -
1622929862.7252464-CDS-H-paniculata_contig2841:16581..168001622929862.7252464-CDS-H-paniculata_contig2841:16581..16800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2841 16582..16800 -
1691481044.6647515-CDS-H-paniculata_contig2841:16581..168001691481044.6647515-CDS-H-paniculata_contig2841:16581..16800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2841 16582..16800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2841.7753.1

>prot_H-paniculata_contig2841.7753.1 ID=prot_H-paniculata_contig2841.7753.1|Name=mRNA_H-paniculata_contig2841.7753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MCMAKLSLWMVATLVSVVGSARRSLAWSSGPRAVQLMPAQGALAVESKGS
TATARSRYKVEQPHIYSDFNGLKVCVWVDSTPSGEQQSSRSGPFCFDKEE
EDLPIEGLDVGSHRLSAAVVAPGDPVIGRKSRLLSPVADTIFEVVLHEEF
AATYTWQDVQEWQSLPAGLEIVLPLDGLGKKRARIPPVWQLQKYVELSGD
DGRTSKGETAVAEKLSGFFVRVNVRPETTVLELRREIARHPRLAGQRIGR
VKLLLGGRLLNDLETLVSLDLFNRLRDFAVVVDPMGGERS*
back to top

mRNA from alignment at H-paniculata_contig2841:14203..16924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2841.7753.1 ID=mRNA_H-paniculata_contig2841.7753.1|Name=mRNA_H-paniculata_contig2841.7753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2722bp|location=Sequence derived from alignment at H-paniculata_contig2841:14203..16924- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCCATTGCCTCTCGCCGGATGGCTCTGACCACAGCATGCACCTGCTA
ATTACTGTAAATGAGCACCACATACACATGGAGAAAAGGTCAAAATAGGT
TCACACGACGCTAGAGAGGTGTAGATGTGTATGGCAAAATTATCGCTCTG
GATGGTGGCGACGCTCGTTTCGGTCGTAGGTTCAGCGAGACGATCGTTGG
CATGGAGCTCAGGCCCGCGCGCTGTCCAGCTTATGCCTGCACAAGGTGCA
TTGGCTGTGGAATCCAAAGGATCAACAGCAACAGCGAGGAGCCGGTACAA
AGTAGAGCAACCGCATATCTACTCCGACTTCAACGGGTTGAAGGTGCGTC
AGTGTAGCATACAACATGTCGGGTGTCGCTCTTGTATCTTCGTAGCGGAG
AACGGTGTGTGTCAACGTATTTATGTATACTACGCATTTAACGTGTCCAG
ATATAGTCATCACAGTACAGTACGGTTGTGTGGCACGTATCTCCAAGATA
TTTTGATTTCAAGTACCTCGAAGATCTAATACGGATAACCGAAGACCCGA
TGAAATGCACACTGGCCAGTACCGAACTGCGCATGCAAAAAGTCCCCGGG
CGAGATTCGAGAGGGGGGGAAGCATTGGTTCAGATTTTCCTATGGTCTCC
TGGGCATTAAAAAAAAATCTACTACACAGATCGTAGCGCGGATTTGTTCC
TTGCTCTGTCGTACCACGTACGAAATATGGTAAATCTATGATAAATCGAT
GGATCTCGCAAAGATCGGGCATGGCAGGCGAACTATTTATAAGGTCGCAC
CGGTGGACAGCATCAATATTTCTTTACAGGGTCGAATAATCGACGGATTC
TTGCTCTACTTGGTTGTGTCCTGACAAAATACTACGCTGATCGCGGACAC
GGAGCACTTCTTAAAGCAGTGGCGCCACACCAACACCAACCCCTCGCCAC
GATCACTGCTAATATTCTTTCGGTTTATCTGTGAAGTGAATGTGGCATTC
TCGCAGCTGTTGCCTGCGCCGTCATCAGCGCGTATCTTCTCAGAATAGAG
GGTGTATACTGTCAGTACTCTACTATGGAGCGTTCCCTGGCAACCCTTTC
CCAACCGTAACGGCGTGAACGATGTGTATGTACTGTCTGCATGATGATCA
TAAACGTTTTCGCAGACGATTACAGTATAAAGTGCAACGTTCAAATCACG
GTGGCCTACGCAGTAGTTGCACAATAATTTCCACTTCAGTGTGAGTAATT
TGGCGCAAATCAGTGCACAGGGTATGTAACACCTTGGTAACCGTAGGCGG
CGTACGGGCAGTTACACAATCGTTGTGCAGAAGGCTTATTGAATCCGTCA
CATCGCATCCGCGTCATACTGCCGTAGCCACCAACCGTGCTTTGCCTCCC
TGTTCCCCTCATTGGCTTTACATGTACATTGTGCGACAACACAGGTGTGC
GTCTGGGTTGATTCCACGCCTTCCGGCGAGCAGCAATCCTCGAGATCAGG
ACCATTCTGTTTCGACAAGGAAGAAGAAGATCTCCCTATCGAAGGGTTGG
ACGTTGGCTCACATAGGTGTGTTCACAGAAACGCATTCAATGGTACAACG
TAGAGCTATAGCACTGTGCTGAACTGGCAGTGCACAACCAGTGTACTCTG
TGGTGTGGCACACAGTGTCGTCGATTTCCTCCTTGCGCTTCTGTGTGTAC
CGTCCCCGTGCTGGTTGGCCCAGGTTGTCTGCAGCTGTCGTGGCCCCAGG
AGATCCAGTCATAGGCAGGAAGTCGAGACTACTGTCGCCTGTGGCGGATA
CAATATTCGAGGTAGTACTGCACGAAGAGTTTGCCGCAACGTACACTTGG
CAGGATGTACAGGAGTGGCAATCTTTACCGGCGGGTCTTGAAATTGTGCT
ACCTTTGGACGGGCTTGGGAAAAAGCGCGCACGAATCCCTCCAGTATGGC
AACTCCAGAAGTATGTTGAGCTTTCTGGGGACGACGGTAGGACCTCAAAA
GGCGAAACTGCAGTCGCCGAAAAACTGAGTGGCTTTTTTGTGCGGGTTAA
CGTACGACCTGAAACCACCGTGTTGGAACTGCGACGAGAGATTGCGCGGC
ATCCGCGTTTAGCGGGACAGCGGATTGGTCGGGTGAAATTGTTGCTGGGA
GGACGACTACTGAATGACCTCGAGACGTTAGTGTCATTGGACTTGTTTAA
CCGCTTAAGAGATTTTGCTGTAGTTGTGGACCCAATGGGTGGTGAACGCT
CTTGATGTTAATCTTCGTTGGCGCGTCCTCGGGTGCTAGCTGCCATGCAT
ACGTACTTGGCGCTATTCCAAAGCGAGTAGCGTCCTGTGTCCTATGTATG
CGGCTGTTTAACATGCATGGAGTGTGTATTATCGGTGCTGGTTGTCTTGA
TTGAACGTGAAAGTCGTCAGGGGTGCCGGTTTCTGTACTGACGTGTATAG
TAGTGTACTCTAAGGTTACTGAAGGATACGCCTAACGTTCTGCGGTCTTG
ATACTAGCGAGACATCAAGCACGGTACTTACTGTACCGTACGAACTGGAA
AGTATACGTTGGGGGTGAGGCGGTTTTGCGCTGTCTAAGTCATTTCGACA
TTCGTGGTTTAGGGCTTTGTGATACGTGACGAGGTCGCGCCATGCCCGTT
TTGTTGCTTCTCTTTTCGATGAAGAGAACGGCTCATAACCATGTTTGTAT
TCTCGTGTGATTGAATTTGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2841:14203..16924-

>mRNA_H-paniculata_contig2841.7753.1 ID=mRNA_H-paniculata_contig2841.7753.1|Name=mRNA_H-paniculata_contig2841.7753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig2841:14203..16924- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTATGGCAAAATTATCGCTCTGGATGGTGGCGACGCTCGTTTCGGT
CGTAGGTTCAGCGAGACGATCGTTGGCATGGAGCTCAGGCCCGCGCGCTG
TCCAGCTTATGCCTGCACAAGGTGCATTGGCTGTGGAATCCAAAGGATCA
ACAGCAACAGCGAGGAGCCGGTACAAAGTAGAGCAACCGCATATCTACTC
CGACTTCAACGGGTTGAAGATGTGTATGGCAAAATTATCGCTCTGGATGG
TGGCGACGCTCGTTTCGGTCGTAGGTTCAGCGAGACGATCGTTGGCATGG
AGCTCAGGCCCGCGCGCTGTCCAGCTTATGCCTGCACAAGGTGCATTGGC
TGTGGAATCCAAAGGATCAACAGCAACAGCGAGGAGCCGGTACAAAGTAG
AGCAACCGCATATCTACTCCGACTTCAACGGGTTGAAGGTGTGCGTCTGG
GTTGATTCCACGCCTTCCGGCGAGCAGCAATCCTCGAGATCAGGACCATT
CTGTTTCGACAAGGAAGAAGAAGATCTCCCTATCGAAGGGTTGGACGTTG
GCTCACATAGGTGTGCGTCTGGGTTGATTCCACGCCTTCCGGCGAGCAGC
AATCCTCGAGATCAGGACCATTCTGTTTCGACAAGGAAGAAGAAGATCTC
CCTATCGAAGGGTTGGACGTTGGCTCACATAGGTTGTCTGCAGCTGTCGT
GGCCCCAGGAGATCCAGTCATAGGCAGGAAGTCGAGACTACTGTCGCCTG
TGGCGGATACAATATTCGAGGTAGTACTGCACGAAGAGTTTGCCGCAACG
TACACTTGGCAGGATGTACAGGAGTGGCAATCTTTACCGGCGGGTCTTGA
AATTGTGCTACCTTTGGACGGGCTTGGGAAAAAGCGCGCACGAATCCCTC
CAGTATGGCAACTCCAGAAGTATGTTGAGCTTTCTGGGGACGACGGTAGG
ACCTCAAAAGGCGAAACTGCAGTCGCCGAAAAACTGAGTGGCTTTTTTGT
GCGGGTTAACGTACGACCTGAAACCACCGTGTTGGAACTGCGACGAGAGA
TTGCGCGGCATCCGCGTTTAGCGGGACAGCGGATTGGTCGGGTGAAATTG
TTGCTGGGAGGACGACTACTGAATGACCTCGAGACGTTAGTGTCATTGGA
CTTGTTTAACCGCTTAAGAGATTTTGCTGTAGTTGTGGACCCAATGGGTG
GTGAACGCTCTTGAGTTGTCTGCAGCTGTCGTGGCCCCAGGAGATCCAGT
CATAGGCAGGAAGTCGAGACTACTGTCGCCTGTGGCGGATACAATATTCG
AGGTAGTACTGCACGAAGAGTTTGCCGCAACGTACACTTGGCAGGATGTA
CAGGAGTGGCAATCTTTACCGGCGGGTCTTGAAATTGTGCTACCTTTGGA
CGGGCTTGGGAAAAAGCGCGCACGAATCCCTCCAGTATGGCAACTCCAGA
AGTATGTTGAGCTTTCTGGGGACGACGGTAGGACCTCAAAAGGCGAAACT
GCAGTCGCCGAAAAACTGAGTGGCTTTTTTGTGCGGGTTAACGTACGACC
TGAAACCACCGTGTTGGAACTGCGACGAGAGATTGCGCGGCATCCGCGTT
TAGCGGGACAGCGGATTGGTCGGGTGAAATTGTTGCTGGGAGGACGACTA
CTGAATGACCTCGAGACGTTAGTGTCATTGGACTTGTTTAACCGCTTAAG
AGATTTTGCTGTAGTTGTGGACCCAATGGGTGGTGAACGCTCTTGA
back to top