mRNA_H-paniculata_contig11213.773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11213.773.1
Unique NamemRNA_H-paniculata_contig11213.773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 5.170e-45
Identity = 109/289 (37.72%), Postives = 167/289 (57.79%), Query Frame = -1 
Query:   71 AARPGRFFTWDQNSMGMAGPLDRYTVAEFKQQYETVVQMKHGLQHHLAHLFLHCTDLLNHEVSRHRT--SGAETPLSLLRAVKLNHVIPAFLLSTDG*LSTRDSFLAVKRRNISIVLPWLMVYTEATVARRRSTVGSTSTPNRYKKAE-TCRRKEGISNAARALLSDEVAPANEDTFDKVSAKFGQEDGPEMAAAKAAAIAASQDSLAAGEDVAWRPDDEYSPETLIVVVKSKNALSAAGNDGLRFSHLHPEHLSG*GRFWPRYRVFLAALHGITRRLPAGVPGVVPPK 928
            ++  G  + W+QNS G+   LD  T+ +   ++ETV ++K  L    A L  H  +L+N E++  R     + TPLSLLRA+KL +++PA L S DG ++ ++ + A+KR +IS  LPWLM Y +A  +R R  V   +  +++K+AE  CR   G+ +AARALL++  +P N++T++++ AKF  ED   +  A A AIA S      G    WRP++E+ P+ LI V+ S+++ S AGNDG RFSHL     +  GR       F  A+  + RRL    P   PP+
Sbjct:  318 SSEAGMLYGWNQNSPGVGPALDEVTMEDLTLRFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGR-----EDFCGAMSSLWRRL-VNDPNTFPPE 600
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.500e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = -2 
Query:    4 TCILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 195
            T I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:  347 TSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 410
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.350e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:   76 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 137
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.640e-10
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ +S+L A G+ CRP+C G T RR +
Sbjct:   31 IVNTKTGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLI 92
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.680e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:  469 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 530
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.890e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:   30 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 91
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.100e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:  370 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 431
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.210e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:  420 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 481
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.430e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:  407 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 468
[Close]
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.500e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    4 ILNTSAGREGFGPVIGSFWRRSME*PDAFPPEFRELFLQSNLTAFGQTCRPICEGSTMRRTL 189
            I+NT  GRE F   + S WRR +  P+AFPPEF  L+ QS+L A G+ CRP+C G T RR +
Sbjct:  399 IVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLI 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11213.773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE5.170e-4537.72Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAK8_9PHAE9.500e-1151.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT19_9PHAE1.350e-1051.61Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L4Y4_9PHAE1.640e-1050.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGW0_9PHAE2.680e-1051.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL14_9PHAE2.890e-1051.61Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE3.100e-1051.61Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE3.210e-1051.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K195_9PHAE3.430e-1051.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE3.500e-1051.61Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11213contigH-paniculata_contig11213:2723..3680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size958
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11213.773.1prot_H-paniculata_contig11213.773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11213 3061..3582 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.822297-UTR-H-paniculata_contig11213:2722..30601622928825.822297-UTR-H-paniculata_contig11213:2722..3060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11213 2723..3060 +
1691480635.4411733-UTR-H-paniculata_contig11213:2722..30601691480635.4411733-UTR-H-paniculata_contig11213:2722..3060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11213 2723..3060 +
1622928825.8737905-UTR-H-paniculata_contig11213:3582..36801622928825.8737905-UTR-H-paniculata_contig11213:3582..3680Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11213 3583..3680 +
1691480635.458692-UTR-H-paniculata_contig11213:3582..36801691480635.458692-UTR-H-paniculata_contig11213:3582..3680Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11213 3583..3680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.8413355-CDS-H-paniculata_contig11213:3060..35821622928825.8413355-CDS-H-paniculata_contig11213:3060..3582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11213 3061..3582 +
1691480635.4498231-CDS-H-paniculata_contig11213:3060..35821691480635.4498231-CDS-H-paniculata_contig11213:3060..3582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11213 3061..3582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11213.773.1

>prot_H-paniculata_contig11213.773.1 ID=prot_H-paniculata_contig11213.773.1|Name=mRNA_H-paniculata_contig11213.773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MAAAFAAAISGPSSCPNFALTLSKVSSLAGATSSDNNALAALEIPSLRLH
VSAFLYRFGVDVLPTVDRRRATVASVYTMSQGSTMLMFLLFTARKLSLVE
SYPSVDRRNAGITWLSFTARSKDSGVSAPDVRCRLTSWLRRSVQCRKRCA
RWCWRPCFIWTTVSYCCLNSATV*
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mRNA from alignment at H-paniculata_contig11213:2723..3680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11213.773.1 ID=mRNA_H-paniculata_contig11213.773.1|Name=mRNA_H-paniculata_contig11213.773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at H-paniculata_contig11213:2723..3680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCAAAGTACGCCTCATCGTAGATCCCTCGCAGATTGGGCGGCACGTCT
GCCCGAACGCCGTGAGGTTGCTTTGGAGGAACAACTCCCGGAACTCCGGC
GGGAAGGCGTCGGGTTATTCCATGGAGCGCCGCCAGAAAGACCCTATAAC
GGGGCCAAAACCTTCCCTACCCGCTGAGGTGTTCAGGATGCAGGTGGGAG
AAACGTAGGCCATCATTACCCGCCGCGGACAGGGCGTTCTTCGACTTCAC
AACAACTATCAGCGTTTCGGGGCTATACTCGTCGTCTGGCCTCCAGGCTA
CATCTTCGCCCGCGGCGAGCGAATCCTGGCTTGCTGCTATGGCCGCCGCT
TTCGCCGCTGCCATCTCGGGCCCATCCTCCTGCCCGAATTTCGCGCTGAC
TTTGTCGAAGGTATCCTCGTTGGCAGGCGCGACTTCATCCGACAACAACG
CTCTCGCCGCGTTAGAGATTCCCTCTTTGCGCCTGCACGTTTCCGCCTTC
TTGTATCGGTTTGGTGTGGACGTGCTTCCCACCGTCGACCGGCGGCGGGC
CACCGTGGCCTCCGTGTACACCATGAGCCAAGGGAGCACGATGCTGATGT
TTCTTCTCTTCACTGCGAGGAAACTGTCCCTCGTGGAGAGTTATCCGTCG
GTAGATAGAAGAAACGCCGGGATAACGTGGTTGAGCTTCACCGCCCGCAG
CAAGGACAGCGGCGTCTCCGCTCCCGACGTCCGGTGCCGGCTCACTTCGT
GGTTGAGGAGGTCCGTGCAGTGCAGAAAGAGGTGTGCTAGGTGGTGTTGG
AGACCGTGCTTCATCTGGACGACCGTCTCGTATTGTTGTTTGAACTCGGC
GACCGTGTAGCGATCCAGAGGTCCCGCCATACCCATGCTATTTTGGTCCC
AGGTGAAGAAGCGTCCGGGCCTGGCTGCGGGGCTATCGCCGGCGCGCACC
CCGGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11213:2723..3680+

>mRNA_H-paniculata_contig11213.773.1 ID=mRNA_H-paniculata_contig11213.773.1|Name=mRNA_H-paniculata_contig11213.773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig11213:2723..3680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCCGCTTTCGCCGCTGCCATCTCGGGCCCATCCTCCTGCCCGAA
TTTCGCGCTGACTTTGTCGAAGGTATCCTCGTTGGCAGGCGCGACTTCAT
CCGACAACAACGCTCTCGCCGCGTTAGAGATTCCCTCTTTGCGCCTGCAC
GTTTCCGCCTTCTTGTATCGGTTTGGTGTGGACGTGCTTCCCACCGTCGA
CCGGCGGCGGGCCACCGTGGCCTCCGTGTACACCATGAGCCAAGGGAGCA
CGATGCTGATGTTTCTTCTCTTCACTGCGAGGAAACTGTCCCTCGTGGAG
AGTTATCCGTCGGTAGATAGAAGAAACGCCGGGATAACGTGGTTGAGCTT
CACCGCCCGCAGCAAGGACAGCGGCGTCTCCGCTCCCGACGTCCGGTGCC
GGCTCACTTCGTGGTTGAGGAGGTCCGTGCAGTGCAGAAAGAGGTGTGCT
AGGTGGTGTTGGAGACCGTGCTTCATCTGGACGACCGTCTCGTATTGTTG
TTTGAACTCGGCGACCGTGTAGATGGCCGCCGCTTTCGCCGCTGCCATCT
CGGGCCCATCCTCCTGCCCGAATTTCGCGCTGACTTTGTCGAAGGTATCC
TCGTTGGCAGGCGCGACTTCATCCGACAACAACGCTCTCGCCGCGTTAGA
GATTCCCTCTTTGCGCCTGCACGTTTCCGCCTTCTTGTATCGGTTTGGTG
TGGACGTGCTTCCCACCGTCGACCGGCGGCGGGCCACCGTGGCCTCCGTG
TACACCATGAGCCAAGGGAGCACGATGCTGATGTTTCTTCTCTTCACTGC
GAGGAAACTGTCCCTCGTGGAGAGTTATCCGTCGGTAGATAGAAGAAACG
CCGGGATAACGTGGTTGAGCTTCACCGCCCGCAGCAAGGACAGCGGCGTC
TCCGCTCCCGACGTCCGGTGCCGGCTCACTTCGTGGTTGAGGAGGTCCGT
GCAGTGCAGAAAGAGGTGTGCTAGGTGGTGTTGGAGACCGTGCTTCATCT
GGACGACCGTCTCGTATTGTTGTTTGAACTCGGCGACCGTGTAG
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