mRNA_H-paniculata_contig28237.7709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28237.7709.1
Unique NamemRNA_H-paniculata_contig28237.7709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28237.7709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28237contigH-paniculata_contig28237:596..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.0762718-UTR-H-paniculata_contig28237:595..6011622929857.0762718-UTR-H-paniculata_contig28237:595..601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28237 596..601 +
1691481042.0202289-UTR-H-paniculata_contig28237:595..6011691481042.0202289-UTR-H-paniculata_contig28237:595..601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28237 596..601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.0929523-CDS-H-paniculata_contig28237:601..9791622929857.0929523-CDS-H-paniculata_contig28237:601..979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28237 602..979 +
1691481042.0322468-CDS-H-paniculata_contig28237:601..9791691481042.0322468-CDS-H-paniculata_contig28237:601..979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28237 602..979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28237.7709.1prot_H-paniculata_contig28237.7709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28237 602..979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28237.7709.1

>prot_H-paniculata_contig28237.7709.1 ID=prot_H-paniculata_contig28237.7709.1|Name=mRNA_H-paniculata_contig28237.7709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MAEMARELLEVDLVQASTALSSFMVAEGSYLKDWLQAIKNTVNSLNTLGK
AYAPNKDFVVCAVGASLHKQFSGVYAHLPHVFNRPYDSLDEFWEKFTHLE
SSIIRAMSPQTPIASFSALPVSTTQQ
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mRNA from alignment at H-paniculata_contig28237:596..979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28237.7709.1 ID=mRNA_H-paniculata_contig28237.7709.1|Name=mRNA_H-paniculata_contig28237.7709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig28237:596..979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACTGATGGCTGAGATGGCAAGGGAGCTCCTGGAGGTGGATCTGGTTCA
AGCGTCAACTGCCTTGAGTTCCTTCATGGTAGCAGAAGGCAGCTATTTGA
AAGACTGGTTGCAAGCGATCAAGAATACGGTAAATTCGCTGAATACCCTG
GGGAAAGCCTACGCCCCTAACAAGGACTTTGTAGTCTGCGCAGTAGGCGC
AAGTTTACACAAACAGTTTTCGGGAGTATATGCCCACTTACCTCACGTTT
TTAACCGCCCGTATGACTCACTAGACGAGTTCTGGGAGAAGTTCACACAT
TTGGAGTCAAGTATAATACGAGCCATGTCACCCCAAACACCAATTGCTTC
ATTTTCCGCGCTGCCCGTGTCGACCACGCAACAA
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Coding sequence (CDS) from alignment at H-paniculata_contig28237:596..979+

>mRNA_H-paniculata_contig28237.7709.1 ID=mRNA_H-paniculata_contig28237.7709.1|Name=mRNA_H-paniculata_contig28237.7709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig28237:596..979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGAGATGGCAAGGGAGCTCCTGGAGGTGGATCTGGTTCAAGCGTC
AACTGCCTTGAGTTCCTTCATGGTAGCAGAAGGCAGCTATTTGAAAGACT
GGTTGCAAGCGATCAAGAATACGGTAAATTCGCTGAATACCCTGGGGAAA
GCCTACGCCCCTAACAAGGACTTTGTAGTCTGCGCAGTAGGCGCAAGTTT
ACACAAACAGTTTTCGGGAGTATATGCCCACTTACCTCACGTTTTTAACC
GCCCGTATGACTCACTAGACGAGTTCTGGGAGAAGTTCACACATTTGGAG
TCAAGTATAATACGAGCCATGTCACCCCAAACACCAATTGCTTCATTTTC
CGCGCTGCCCGTGTCGACCACGCAACAAATGGCTGAGATGGCAAGGGAGC
TCCTGGAGGTGGATCTGGTTCAAGCGTCAACTGCCTTGAGTTCCTTCATG
GTAGCAGAAGGCAGCTATTTGAAAGACTGGTTGCAAGCGATCAAGAATAC
GGTAAATTCGCTGAATACCCTGGGGAAAGCCTACGCCCCTAACAAGGACT
TTGTAGTCTGCGCAGTAGGCGCAAGTTTACACAAACAGTTTTCGGGAGTA
TATGCCCACTTACCTCACGTTTTTAACCGCCCGTATGACTCACTAGACGA
GTTCTGGGAGAAGTTCACACATTTGGAGTCAAGTATAATACGAGCCATGT
CACCCCAAACACCAATTGCTTCATTTTCCGCGCTGCCCGTGTCGACCACG
CAACAA
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