mRNA_H-paniculata_contig28199.7694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28199.7694.1
Unique NamemRNA_H-paniculata_contig28199.7694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28199.7694.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.960e-5
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 3 
Query:  534 SGASNHFVDSELFNDIENKMVDFIKYEPSLPIAAAGRHAL*GIGKGTLQVFAKDQRGHKRSVQ 722
            SGAS H++DSEL  D+EN + DF        I  AG   L G  KG + VFAKD+ G+ R V+
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVR 373
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28199.7694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE1.960e-546.03Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28199contigH-paniculata_contig28199:2461..3194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size734
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28199.7694.1prot_H-paniculata_contig28199.7694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28199 2473..2922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.2457798-UTR-H-paniculata_contig28199:2460..24721622929855.2457798-UTR-H-paniculata_contig28199:2460..2472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28199 2461..2472 +
1691481041.2537515-UTR-H-paniculata_contig28199:2460..24721691481041.2537515-UTR-H-paniculata_contig28199:2460..2472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28199 2461..2472 +
1622929855.272155-UTR-H-paniculata_contig28199:2922..31941622929855.272155-UTR-H-paniculata_contig28199:2922..3194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28199 2923..3194 +
1691481041.280055-UTR-H-paniculata_contig28199:2922..31941691481041.280055-UTR-H-paniculata_contig28199:2922..3194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28199 2923..3194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.2584043-CDS-H-paniculata_contig28199:2472..29221622929855.2584043-CDS-H-paniculata_contig28199:2472..2922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28199 2473..2922 +
1691481041.2721038-CDS-H-paniculata_contig28199:2472..29221691481041.2721038-CDS-H-paniculata_contig28199:2472..2922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28199 2473..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28199.7694.1

>prot_H-paniculata_contig28199.7694.1 ID=prot_H-paniculata_contig28199.7694.1|Name=mRNA_H-paniculata_contig28199.7694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MLCVIVIPRKTSIVVKQAANSVVYTTSTVTTTKIAVSRKINRVINRTKNG
AACTIPLIPTTPSAAIKKTTSATPALAAINAPTATSIGEDSINDLRAALC
IKPTPPLIQTPLLYFLRTTLRLRSTLRHLNLRRLLHLPLHHHRLESGFR*
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mRNA from alignment at H-paniculata_contig28199:2461..3194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28199.7694.1 ID=mRNA_H-paniculata_contig28199.7694.1|Name=mRNA_H-paniculata_contig28199.7694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=734bp|location=Sequence derived from alignment at H-paniculata_contig28199:2461..3194+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAATCGGACATGTTATGCGTGATTGTCATTCCAAGAAAGACATCAAT
AGTGGTAAAACAAGCAGCAAATAGTGTAGTCTACACAACATCCACCGTCA
CGACAACGAAGATTGCCGTGAGCAGAAAAATCAACAGAGTGATCAACAGA
ACAAAAAACGGTGCAGCCTGCACAATTCCCCTCATCCCGACAACTCCGAG
TGCCGCGATCAAGAAGACAACCAGCGCAACACCAGCTCTAGCGGCAATCA
ACGCCCCAACGGCAACATCAATCGGCGAGGACAGCATCAACGATCTTCGA
GCAGCCCTCTGCATCAAGCCAACACCGCCATTGATTCAGACGCCACTACT
GTACTTCCTGCGTACAACGCTTCGACTGCGTTCAACTCTGCGACATCTCA
ACCTTCGACGATTACTGCACCTCCCACTACATCACCACCGCCTGGAATCG
GGTTTTCGTTGATAACTGAAGAAACCAACATCTACACCAAGCCAAACTCA
TGTACATCAATCAAGTTCTGCATGACGGCTGACAGCGGTGCCTCCAACCA
CTTCGTCGACAGCGAACTGTTCAACGACATCGAGAATAAGATGGTGGACT
TCATAAAGTACGAACCGTCGCTTCCCATCGCCGCTGCAGGACGCCATGCT
CTATAAGGGATTGGGAAAGGTACGCTCCAAGTATTCGCAAAGGATCAGCG
CGGCCACAAGCGCTCCGTTCAACATCCCGCGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig28199:2461..3194+

>mRNA_H-paniculata_contig28199.7694.1 ID=mRNA_H-paniculata_contig28199.7694.1|Name=mRNA_H-paniculata_contig28199.7694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig28199:2461..3194+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATGCGTGATTGTCATTCCAAGAAAGACATCAATAGTGGTAAAACA
AGCAGCAAATAGTGTAGTCTACACAACATCCACCGTCACGACAACGAAGA
TTGCCGTGAGCAGAAAAATCAACAGAGTGATCAACAGAACAAAAAACGGT
GCAGCCTGCACAATTCCCCTCATCCCGACAACTCCGAGTGCCGCGATCAA
GAAGACAACCAGCGCAACACCAGCTCTAGCGGCAATCAACGCCCCAACGG
CAACATCAATCGGCGAGGACAGCATCAACGATCTTCGAGCAGCCCTCTGC
ATCAAGCCAACACCGCCATTGATTCAGACGCCACTACTGTACTTCCTGCG
TACAACGCTTCGACTGCGTTCAACTCTGCGACATCTCAACCTTCGACGAT
TACTGCACCTCCCACTACATCACCACCGCCTGGAATCGGGTTTTCGTTGA
ATGTTATGCGTGATTGTCATTCCAAGAAAGACATCAATAGTGGTAAAACA
AGCAGCAAATAGTGTAGTCTACACAACATCCACCGTCACGACAACGAAGA
TTGCCGTGAGCAGAAAAATCAACAGAGTGATCAACAGAACAAAAAACGGT
GCAGCCTGCACAATTCCCCTCATCCCGACAACTCCGAGTGCCGCGATCAA
GAAGACAACCAGCGCAACACCAGCTCTAGCGGCAATCAACGCCCCAACGG
CAACATCAATCGGCGAGGACAGCATCAACGATCTTCGAGCAGCCCTCTGC
ATCAAGCCAACACCGCCATTGATTCAGACGCCACTACTGTACTTCCTGCG
TACAACGCTTCGACTGCGTTCAACTCTGCGACATCTCAACCTTCGACGAT
TACTGCACCTCCCACTACATCACCACCGCCTGGAATCGGGTTTTCGTTGA
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