mRNA_H-paniculata_contig2815.7684.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2815.7684.1
Unique NamemRNA_H-paniculata_contig2815.7684.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2815.7684.1 vs. uniprot
Match: D7FYX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX2_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.080e-7
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  118 ESEIEKYRRLYEEQRTKVKELERQNSQLKDAVQQLMAAGRQAGANKG 258
            E E++KY+RLYEEQ+ KVK+LERQN QLKD VQ LM  GRQ G+  G
Sbjct:    4 EEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAG 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2815.7684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYX2_ECTSI1.080e-765.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2815contigH-paniculata_contig2815:13626..17750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002800.1
Exons2
Model size409
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2815.7684.1prot_H-paniculata_contig2815.7684.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2815 13626..17645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.9147751-CDS-H-paniculata_contig2815:13625..138291622929853.9147751-CDS-H-paniculata_contig2815:13625..13829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 13626..13829 -
1691481040.704305-CDS-H-paniculata_contig2815:13625..138291691481040.704305-CDS-H-paniculata_contig2815:13625..13829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 13626..13829 -
1622929853.9354093-CDS-H-paniculata_contig2815:17546..176451622929853.9354093-CDS-H-paniculata_contig2815:17546..17645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 17547..17645 -
1691481040.7175283-CDS-H-paniculata_contig2815:17546..176451691481040.7175283-CDS-H-paniculata_contig2815:17546..17645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 17547..17645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.9512923-UTR-H-paniculata_contig2815:17645..177501622929853.9512923-UTR-H-paniculata_contig2815:17645..17750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 17646..17750 -
1691481040.728963-UTR-H-paniculata_contig2815:17645..177501691481040.728963-UTR-H-paniculata_contig2815:17645..17750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 17646..17750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2815.7684.1

>prot_H-paniculata_contig2815.7684.1 ID=prot_H-paniculata_contig2815.7684.1|Name=mRNA_H-paniculata_contig2815.7684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MAEEESEIEKYRRLYEEQRTKVKELERQNSQLKDAVQQLMAAGRQAGANK
GPGAAAGGGGTSGQGGGDARSGGQRLPRVRGAGARGGANPSPAPNAGAGG
G
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mRNA from alignment at H-paniculata_contig2815:13626..17750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2815.7684.1 ID=mRNA_H-paniculata_contig2815.7684.1|Name=mRNA_H-paniculata_contig2815.7684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4125bp|location=Sequence derived from alignment at H-paniculata_contig2815:13626..17750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAAAATTAAGTAGTCGAAGCTGAGGTTTGAGAGGTCGGCGAGAGAGACA
GGAAAGGCAGTGATCACCAGGTTGTGTTCCAATTCAGGTTTGGAAAGAGG
AAAGGATGGCCGAGGAAGAGAGCGAGATCGAGAAGTACAGGCGTCTATAC
GAGGAGCAAAGGACGAAAGTCAAGGAATTGGAGAGGCAAAACTCGCAGCT
GAAGGTGAAAAATAGAAACTGTTGCGTACTGTATCATCACAGGTCTTCCA
GGTGCCTACGAACTGCTTGCTCTTGCCCGCAGGGTATAGATATGTGTGGA
AGCATGAAGGAAATTGGGATTCTTGTAAAGAAGGAACTCATTGCATCGTT
TCCTTTCCGGATGGTGCACAGGCCTTGGCTTGATGCATATCCAAGGTCAC
CCGGGAGCCAGAAAAAGGACTCCTGGCGACACTTTTCAATACGTGCTGCA
AGCGGGCTGTGTACCTCCAGTACCGCACGATATGCTCTGACCGCACTTGC
ACAGACTGTGCTGTACTGTCTGCCACTCTGCCTCCGCTGCGTGCATGTCA
CTTTACTCACATTGCATTGCGACACCATTCGGCGTTCACCGTCCTAGGAG
ACCCAAGTGTCTTGTGCTAGCTGACGATTGGCCCAAATCCCAAAAGCAAA
TCCCTCCATTTCTACACCGTCCGTACTACACTGTACACCTCATTTCGCTC
AAGTAACGTTTACTTTTTACAGGCACTTTTTTTTTTGGTCCACTGGAGAG
CCTGGAGAGTTATCTTCCACGTTCCCAGAATACCCCAACATTCTTCCTGT
GGCATATAGATTGAGTTTGTACCAACCAGCGCACGCTAGCGCGATAAGCT
TTTGCTCTGCTTGTGTTCCGCCGATGCGCACTGCTGCCCGGGTGCGGTGA
TATATATATACAAACCAGCGATGTTTCGATAATGCTTGTCGCCAACCAAA
AGCACGCCCTACACAAACGAGTACCGCAATAGCGTGAGGTGAGTTGGACA
GTGGATGCTCTTGGTGCTTCCTTGAGAAGTTCGCACAGGTATCAAACATG
CAAATTTTACGATCCACATGTGGCATTCATTGTAATTAATATATGGTATT
AACTTGCTAATATCGGTGTTAGTACGGTGGGGTCGGTCTAGGTGTGTACT
CGTACACTTGAATAGTTTTGTGTGTCTTGTGGTTGTGCCATGTGCAGCTC
GTTATCCAACAGACAAATGATGCTAAAGGGGATTTGCTCCCTGAATTATG
ACTTGGTACTTGTAATGCACAGAGTCATGCGTGATTACGACCAACAGCAC
ACCATAATGAACAAACATGCATGCCGCGGCCAGTCCAATGGCAGATGCAG
CTGGTCGTATGGCAAGGATTCGGGCATCATCAAAGGGTCAGGCGGAAAGA
GACGTTTCGCCACGGGGGAGCCTTCGAACAATCGCGAGAGCATTGCATTC
ATAAGGCTCGCTCACAGAGAGAGATGGTACAGTTTAAAAATTCATCACTC
ACAACTTGTGGTGTTTCGGCCAGAGTTTATTATCGGGTAGTGTTGGCCAT
TCACCTTGTGTTCCGAATATCATCCTCTGAAATTCAAATTTCGGACGTTT
CCCAGATTTTATGAGATTTCACATGAAAATTTGATGAAAGCAAAACAAAA
AACAAAAAAGTTGCCAACGGTAAAAGGAGAATCGAGTTTGAGTCAAAGTT
ATATGTTTTACTATTAACAATAATTCATGTGGTGCTCGATGGATGAAGAG
TCGGCAGTTGCGGGTGATCCCTGCAGCTCCGTCCGCCCGAGCTGTAGCAC
GAAGCGAGGCAGTCACGCGGCGCCATGTTACATGGGACGTGAAGTCCACA
CAAGGTAACGGACGCATCCAATGTACGATCATTTCATCTGAATTGTGTAC
ACGTTTTACGCCAAGTATGGATGATGAGAAAATCGTTTGCAATGAAAACG
TTCGGGTGTCAGTAACACTGCAAGCCGTCCAACAGACGAATGTAGCTGTG
GATATCTTCGTTTCAGAGCGCCGTTTGCTGAAACAAGATGTAAAACTGGG
GTTGCGAAACGATCAATTTTTCCTGCAGTAGAGCACGTGGAACAGATAAA
CGGGTATCCATCGACACTGGAGGGGTGACGATGAGATCTGTGCATCCCAC
ACACGTTCTAGTCGCCCCCATTCCCAGAGAAAGTGATACCCGCAACTGAA
CCAATAGTGAAATTGGTCGACATCTCTGTGTTGTAGAGTGCAGTTTACTG
ACGAATCAAATTGCCTGGCGGTAGCATTGATTTCTCGATGTACGCGAGCA
TGTGCAACAAGTATACGCATGCCCATCAACCAGCTACGATGAGACCTATC
CATCCCACGCAAGGTCTAGGCGTTGACGCTGCTGAAGGAATAGGTGTCCG
CAGCTGATGAGCACGGTGGTGATCGTCTCAAACTCTATTTTCACGCTCAT
AAAAAGGCGTTTTCCCTTCTGAAAATGTTTAAGCATCACTGGACCGGTGC
TAAAGAACCACGTGTGCAAACTTCGAAGTTCCATGCTGCCAAATCTTTGT
GTGAAGGTATAGTCATACACGCACTAAGCTGGCTCGCACTGGAATATGAC
ACCTCCCTGGACTACCTACCTACCACCAGTAGAAACAAGAACCAACAGTG
GCATATCCCAGGTGTCCTCATCGTCCAACATTAACCGCTCTCTTTTTGAC
AGCCAGTTTCTTCGCCGATTTCCATACAGCCCGACCTGGCAGCATACCTG
ACCTGGGCACTATATCTAGCTTGTCTGCTGTAGTTTAGGGGGTGGCGGCT
GTTCGTCTTCAAAAGCTGCACTTAACAGTCGACCCTGGACAAGTCAACCT
TTTGGAAGCACGTGCTCCCTCAATCATAACTGACAAGTGGAATGAAGGTG
TACCACGCCAGGTTGATATCTTTTTCTTTTCTTTTTTTCTTTATTTTGTC
TAGGAGGCAAAAGACCTAGTGATTGTTCACACAAAGCAGGCCTATGTGAT
GGCCGATTTCGATGAGGTCTTGATAGCCCCACACTTATTTTCTCGGTGTC
ATGAGCACACCATCGTCTTCAAGAAAAAAATTGCCCGCTCCTGAAAGAAT
GCCGTGCTGTAGATTTTTTCGCTAATGCTCCGCGCGAAACCGTGAGGCGC
AAGACGATTAGCGCTGGGTGGAATCGAAGACAGTGCTAGCCCAGCCGAGA
CATGACCTGATCAGACGTCGCTCTCGTCTATCCGACACTATTTCTTCTGC
CCCACAAAACTTTAGTGCTGGGAGTTACAGGTACAGCAGGTGCAACAAAT
GGAAGCATGTACGCATGCTCCAAACAACAGGTTTGCGCTGTTGCCCGCAC
ATGACGACTGATATAACTCAGACGAACAAATGTGCCCCTCCGCGGCCCTT
TCAGGTGTAATCTAACAAAGCACCTATTGAAAGATCCATATTTGTCAAGA
CTACCGTGAGCGTATGTCAACAATTTGTGTGTGTGTGTGTGTTTTAATGA
AGATCTGTTGGCTGTTGGGGTCCTACTTTGATATGCAGTCTTCTAAGCCG
TATTGGCAGGGTAGAGGGTGAGCACATATGCTGTTGTGCTCGTTGGATCC
ATCATGTAGTCAATGCCGCGTGGCCTTGTTTGCACGACGCTCCTGGCAAA
CATATGGAGTAAGTGAAACGAAAGATAGGTATTACCTCGTGGCAACACCC
ACACACACGGGGGGGGGGGATGCAAGAAATGAAATTATTAAGCATGGTGT
ATTGTCTCCTTCCCCTCTGCTTTGTTGAATCTGTAGATAATAACCGAGTA
ATTCAGCGACTTGAAGATATAGACCATACCTCGTTTTCGTGGCATGGTCA
TTAGCATGTTTCTACATTACATCATTTAATCTTTTCCCCCTTTCGCGCGC
TCACATCCTCTACTCCGCTAGGATGCCGTCCAGCAGCTAATGGCCGCGGG
GCGTCAAGCAGGGGCAAACAAGGGCCCGGGCGCTGCCGCAGGTGGGGGTG
GGACCTCTGGCCAAGGCGGAGGGGATGCGCGCTCGGGAGGGCAGCGGTTG
CCTCGGGTGCGGGGTGCTGGAGCTCGCGGGGGCGCGAACCCTTCCCCTGC
GCCAAACGCAGGGGCGGGCGGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2815:13626..17750-

>mRNA_H-paniculata_contig2815.7684.1 ID=mRNA_H-paniculata_contig2815.7684.1|Name=mRNA_H-paniculata_contig2815.7684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig2815:13626..17750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAGGAAGAGAGCGAGATCGAGAAGTACAGGCGTCTATACGAGGA
GCAAAGGACGAAAGTCAAGGAATTGGAGAGGCAAAACTCGCAGCTGAAGA
TGGCCGAGGAAGAGAGCGAGATCGAGAAGTACAGGCGTCTATACGAGGAG
CAAAGGACGAAAGTCAAGGAATTGGAGAGGCAAAACTCGCAGCTGAAGGA
TGCCGTCCAGCAGCTAATGGCCGCGGGGCGTCAAGCAGGGGCAAACAAGG
GCCCGGGCGCTGCCGCAGGTGGGGGTGGGACCTCTGGCCAAGGCGGAGGG
GATGCGCGCTCGGGAGGGCAGCGGTTGCCTCGGGTGCGGGGTGCTGGAGC
TCGCGGGGGCGCGAACCCTTCCCCTGCGCCAAACGCAGGGGCGGGCGGGG
GCGATGCCGTCCAGCAGCTAATGGCCGCGGGGCGTCAAGCAGGGGCAAAC
AAGGGCCCGGGCGCTGCCGCAGGTGGGGGTGGGACCTCTGGCCAAGGCGG
AGGGGATGCGCGCTCGGGAGGGCAGCGGTTGCCTCGGGTGCGGGGTGCTG
GAGCTCGCGGGGGCGCGAACCCTTCCCCTGCGCCAAACGCAGGGGCGGGC
GGGGGC
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