prot_H-paniculata_contig2813.7680.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2813.7680.1
Unique Nameprot_H-paniculata_contig2813.7680.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length265
Homology
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BLAST of mRNA_H-paniculata_contig2813.7680.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 9.520e-30
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 0 
Query:    1 MYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLVLTEEQKEKSAMKKFKFVCSLCVKLRQKAEK 65
            +YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNL L+ EQ++K+A+KKFKFVCSLCVK+R K EK
Sbjct:  124 IYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVEK 188
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BLAST of mRNA_H-paniculata_contig2813.7680.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 3.750e-28
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0 
Query:    1 MYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLVLTEEQKEKSAMKKFKFVCSLCVKLR 60
            +YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNL L+ EQ++K+A+KKFKFVCSLCVK+R
Sbjct:   88 IYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVR 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2813.7680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDU9_ECTSI9.520e-3083.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE3.750e-2885.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 2..57
e-value: 2.4E-5
score: 33.8
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 2..57
e-value: 1.5E-7
score: 31.2
NoneNo IPR availableGENE3D2.60.120.650coord: 1..106
e-value: 7.9E-10
score: 40.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 2..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2813contigH-paniculata_contig2813:15633..18511 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2813.7680.1mRNA_H-paniculata_contig2813.7680.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2813 15601..18511 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2813.7680.1 ID=prot_H-paniculata_contig2813.7680.1|Name=mRNA_H-paniculata_contig2813.7680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLVLTEEQKEKSAMKKFK
FVCSLCVKLRQKAEKRKGKGKEKDKGGKAAKTGKGNSSNSKAVADGDAEI
LASPSSAGGGAGSSSSSRKTAKSPRIKLKLKIPPTAGQNAAAGSVTGSPK
PSKKKSRGVTSPSSTTNTDDDDEDYDDDDHDDDGANNHAAAAAAAAAAAA
ASSSPVSPPRGKKMPPPLSTKPSLKRRRTSGSGGAGDVRKQSSGRGAAAA
AMADTTSEDSEAQEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD