mRNA_H-paniculata_contig11209.768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11209.768.1
Unique NamemRNA_H-paniculata_contig11209.768.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 1.090e-96
Identity = 158/264 (59.85%), Postives = 195/264 (73.86%), Query Frame = 3
Query:  117 SSMAILTAVASMMATATIT--QALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDD-DCGFLLENLCMEG-AEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT---DEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPTVGD 887
            SS+A L A+A ++   TIT  +AL+V  P+   TVVSG PY V W G+S D+RFEIDL YCGSYSYCF++ +CGF L N+C EG   GC   A+    V  PEPL G S+ GYR+RIAEVG   D+ RCSDDFYL++S D P VG  G P+I VV+PTA+++AI+GE YTVEFDYDNGFG  +GRFKIDLY    ++G GDCG WV S+CDKPD+GC DS GDYN+VIP  +E GMYKIRVG+FGDD++YACS +FEV+    D
Sbjct:    3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.610e-93
Identity = 149/257 (57.98%), Postives = 189/257 (73.54%), Query Frame = 3
Query:  117 SSMAILTAVASMMA-TATITQALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDD--DCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPT 878
            SS+A LTA+A ++  T T T+ALRV  P+   +V SG PY V W G+  D+RFE+DL YCGSYS+CF +  DCGF + N+C E  + C +  +    V  PEP+ G S+NGYRVRI+EVG   D+ RCS+DFYLVAS DV   G  G P++ VV+P A ++A++GE YTVEFDYDNGFG  +GRFKIDLY  EG GDCG WV S+CDKPD+GC+DS GDY++VIP  +E GMYKIRVG+FGDDS+YACS +FE+  T
Sbjct:    3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTT 257          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 9.200e-87
Identity = 144/256 (56.25%), Postives = 186/256 (72.66%), Query Frame = 3
Query:  117 SSMAILTAVASMMATA-TITQALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFD--DDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLP 875
            SS+A + A+  M+    T T+ALRV  P+   TVVS  PY V W G+SPD+RFEIDL YCGSYS+CF+  D+CGF + NLC EG + C    +    V +PEP+DG S++GYRVRI +VG   ++ RCSD+FYL++S D         P++ VV+P++ ++A++G  YTVEFDYDNGFG   GRFKIDLY  EG GDCG WV S+CDKPD+GC D+ GDY+IVIP  +E GMYKIRVG+FGDDSV+ACS +FEV+P
Sbjct:    3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 3.070e-76
Identity = 127/232 (54.74%), Postives = 162/232 (69.83%), Query Frame = 3
Query:  177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 872
            AL V  P+EG  VV+   Y VEWTG+  + R+EIDL YCGS   C +D+CG  +  LC  G +GC  D  G Y ++MPEP+ G S +GY+VR+A+V    DS  CSD+FYL+A  + P  G  G P +TV SP++   A +GEEYTVEFDYDNG G++VGRF IDLY+  G GDCG ++ ++CDKP IGCKDS GDY++ IP  AE+GMY IRVG F DDSVY CS+ FE+L
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSM--CMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 2.760e-74
Identity = 125/235 (53.19%), Postives = 159/235 (67.66%), Query Frame = 3
Query:  168 ITQALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 872
            +  AL V  P+ G  VVS   Y VEW+G+  ++RFEIDL YC S   C +D+CG  +  LC  G +GC  D  G Y ++MPEP+ G S +GY+VR+A+V    DS  CSD+FYL+A  D P     G P +TV SP+    A +GEEYTVEFDYDNG G++VGRF IDLY   G GDCG ++ ++CDKP IGCKDS GDY++ IP  AE+GMY IRVG F D+SVY CS+ FE+L
Sbjct:   17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSM--CMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 7.940e-72
Identity = 125/238 (52.52%), Postives = 164/238 (68.91%), Query Frame = 3
Query:  177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPTVGDD 890
            AL+V+ PS+G+TV++   Y VEWTG+S D RFEIDL YCGS   C +DDCG  +  LC  G +GC  D  G Y ++MPEP+ G S +GY+VR+ ++    D+  CSD+FYL+AS++ P VG    P++ V SP +  +A +  EYTVEFDYDNG G++V RF IDLY  +G GDCG +V SICDKP IGCKDS GDY++ IP   ++G YKIRV  F DDS+Y+CS  F +    GDD
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDD 250          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 1.780e-67
Identity = 126/238 (52.94%), Postives = 154/238 (64.71%), Query Frame = 3
Query:  177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPTVGDD 890
            AL V  PS  + VV+   Y VEWTG+    RFEIDL +CGS   C +D CG  +  LC  G EGC  D  G Y ++MPEP+ G S++GY+VR+ +V    DS+ CSD FYL+AS D P  GS     +TV SP     A +GEEYTVEFDYDNG G+ V RF IDLY  +G GDCG +V SICDKP IGCKDS GDY++ IP   E+G YKIRVG F D+ +Y CS  F ++   GDD
Sbjct:   19 ALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSM--CMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG--GDD 249          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 3.060e-67
Identity = 124/232 (53.45%), Postives = 157/232 (67.67%), Query Frame = 3
Query:  177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 872
            AL V  P+ G  VV+ S Y VEWTG++   R++IDL YCGS   C +D+CG  +  LC  G +GC  D  G Y V+MPEP+DG SS GY+V + +     D   CS DF L+AST+ P     GA  ++V SP+    A++G EYTVEFDYDNG G++V RF IDLY+  G GDCG +V +ICDKP IGCKDS GDY++VIP   ESGMY IRVGVF DD VY CS++FE++
Sbjct:   19 ALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 7.220e-62
Identity = 116/231 (50.22%), Postives = 152/231 (65.80%), Query Frame = 3
Query:  177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEV 869
            AL V  P  G++V++   Y VEWTG++   RFEIDL YC S+  C DD CG  +  LC  GA+GC  D+ G Y ++MPEP+ G SS GY+V +       D + CSDDF L+AS D P  G  G  S+TV SP+    A++GE YTVE+DY+NGFG++  RF +DLY   G GDCG +V ++CD+P IGC DS GDY++ IP    +GMY IRVGVF D+ +Y CS+ FEV
Sbjct:   19 ALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSF--CMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 2.000e-57
Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 3
Query:  177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDS 755
            AL+V+ PS+G+TV++   Y VEWTG+S D RFEIDL YCGS   C +DDCG  +  LC  G +GC  D  G Y ++MPEP+ G S +GY+VR+ ++    D+  CSD+FYL+AS++ P VG    P++ V SP +  +A +  EYTVEFDYDNG G+ V RF IDLY  +G GDCG +V SICDKP IGCKDS
Sbjct:   20 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI1.090e-9659.85EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE2.610e-9357.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI9.200e-8756.25EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI3.070e-7654.74EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE2.760e-7453.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE7.940e-7252.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.780e-6752.94EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI3.060e-6753.45Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE7.220e-6250.22GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI2.000e-5753.37Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11209contigH-paniculata_contig11209:3130..7034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size2226
Cds size795
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.1719794-UTR-H-paniculata_contig11209:3129..32361622928825.1719794-UTR-H-paniculata_contig11209:3129..3236Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11209 3130..3236 +
1691480635.0800834-UTR-H-paniculata_contig11209:3129..32361691480635.0800834-UTR-H-paniculata_contig11209:3129..3236Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11209 3130..3236 +
1622928825.2499073-UTR-H-paniculata_contig11209:5710..70341622928825.2499073-UTR-H-paniculata_contig11209:5710..7034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11209 5711..7034 +
1691480635.134208-UTR-H-paniculata_contig11209:5710..70341691480635.134208-UTR-H-paniculata_contig11209:5710..7034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11209 5711..7034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.190843-CDS-H-paniculata_contig11209:3236..33551622928825.190843-CDS-H-paniculata_contig11209:3236..3355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 3237..3355 +
1691480635.0893772-CDS-H-paniculata_contig11209:3236..33551691480635.0893772-CDS-H-paniculata_contig11209:3236..3355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 3237..3355 +
1622928825.204899-CDS-H-paniculata_contig11209:4223..43141622928825.204899-CDS-H-paniculata_contig11209:4223..4314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 4224..4314 +
1691480635.0982618-CDS-H-paniculata_contig11209:4223..43141691480635.0982618-CDS-H-paniculata_contig11209:4223..4314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 4224..4314 +
1622928825.2187395-CDS-H-paniculata_contig11209:4652..49551622928825.2187395-CDS-H-paniculata_contig11209:4652..4955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 4653..4955 +
1691480635.1070354-CDS-H-paniculata_contig11209:4652..49551691480635.1070354-CDS-H-paniculata_contig11209:4652..4955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 4653..4955 +
1622928825.228331-CDS-H-paniculata_contig11209:5264..54001622928825.228331-CDS-H-paniculata_contig11209:5264..5400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 5265..5400 +
1691480635.116474-CDS-H-paniculata_contig11209:5264..54001691480635.116474-CDS-H-paniculata_contig11209:5264..5400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 5265..5400 +
1622928825.2399213-CDS-H-paniculata_contig11209:5564..57101622928825.2399213-CDS-H-paniculata_contig11209:5564..5710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 5565..5710 +
1691480635.1263068-CDS-H-paniculata_contig11209:5564..57101691480635.1263068-CDS-H-paniculata_contig11209:5564..5710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11209 5565..5710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11209.768.1prot_H-paniculata_contig11209.768.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11209 3237..5710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11209.768.1

>prot_H-paniculata_contig11209.768.1 ID=prot_H-paniculata_contig11209.768.1|Name=mRNA_H-paniculata_contig11209.768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MGFSSMAILTAVASMMATATITQALRVTMPSEGMTVVSGSPYPVEWTGSS
PDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMM
PEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPS
ITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGG
WVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSE
AFEVLPTVGDDIWA*
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mRNA from alignment at H-paniculata_contig11209:3130..7034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11209.768.1 ID=mRNA_H-paniculata_contig11209.768.1|Name=mRNA_H-paniculata_contig11209.768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3905bp|location=Sequence derived from alignment at H-paniculata_contig11209:3130..7034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTTCTAGGCAATACTTGCAGCACCCTTCCCAAGCATTGCACTTCTGT ACCACGCCACGACGTGTTTGGTCAACTACTCAACTTTCTTCTGTGAACGA ACGAAACATGGGCTTCTCTAGCATGGCGATTCTGACTGCAGTGGCGAGCA TGATGGCAACAGCGACAATTACCCAGGCGCTGCGTGTCACGATGCCGTCA GAGGGCATGACTGTGGTGTCTGGAAGGTTGGTGGAAAGCATGTATTCGCG TAAAGGCAGTGTTCCGCCACGGACCTACACCGGAACGGGTAGGGTAGCTC GTGTACTGAGTGTGACTGGAAGTCTAGTCAGAGGTCTTTTGACAGCTGAA ACTCCTAAACTGCCTACTTGGTTCGGCCGGACCGGGGTGGCGCCCACCCT GCGGAGGAATAAATGACTCTGTTCTGTTAAAGGGAATGTAGATATGTTTG GGCGAATACCTGAATGTGGAAGCAGCGGGAAAGGTTTTTGCCTTAGCATT CATAAGGTTGAAGGCAGTGTTTTCCGTACATGTTGTCACGCCTGATATTG ATACAGATGACGTGGTCTTTCCGAGTCAGAGTGAATTTTTGAGAGACGGT CAGGTTGGCATATTGATGTGAGGTCGCAGGAGGGTCGTCTGACATGTCTC ATCTTTCCCTACCTCAAGGACAGAGAACAATGCCCTCGACATGGTGAGGG GTATAGTGAGTCACTGCTGTCTGATCGGTCTACCGTATACTTTACCTACA CTGGAAATATCTAACGGGCATGATGCTGCTCACAACAACTGAGCGCTTGA TTTTTATCTTGATTTTTGTCTTTAGTCGGACGATCGCTGTCGGGCCATTC TGTGCTCGGAATTAGCATGTTGGGGACATGCACCACTTAGCCTGATTTTG AGGGTTCTTTCTAATCGTGGTCGTATGTGGTCTCTCACAAAGCTAAACCC ATGTTCCTGTCTAACGCGTTTCTCAGTAAGTGGTGAACTACTCGAAAAAG TCTCATCTGACTAAAAAGTGCCTCCGTGATGACCTCTTATACTGTTCGTT TTGATTGCGTGCCTTTGTTTTGTTTTATATTTCTACCGTTGTAGCCCATA CCCTGTGGAGTGGACGGGCTCCTCACCAGACGAACGATTCGAAATCGATC TCACCTACTGTGGCTCCTACTCATATTGTTTCGATGTGAGTGCTAATCAA CATTTTTATTACAGTACAAATTAGTACCCCGTGCTGTAAAAACACACGGT ACGCTAAGCTAGCTGTAGCGTGTGTATTATTGGCGTGACAGCATCACTTG AGATTTCGCTTAGTAGATTTTCCGATAACGTTAAAGTCTCCTTATAGAAA CGCGAGTTGTAGCCTGGCATTCAACATTTCCCGTACAGCAAGGAGAAATT CCTCAGTCAAAACGGGACTCGAGTATGTTTCTTTAATCTTTTCCGGCTGC ATCCTATTGTTTGAGGTCCATTCCGACCACCCCTCTGTCGTCATCCCCAT CGTGCCTCCCGCGCAATCCGTAGGATGACTGTGGTTTCCTCCTGGAAAAC TTGTGCATGGAGGGAGCAGAGGGTTGCGCTTTGGACGCCAATGGTGGCTA CCATGTTATGATGCCAGAGCCGTTGGATGGTATCTCCAGCAACGGCTACA GGGTACGGATCGCAGAGGTCGGAGGCGGCTTAGACAGTGTCCGATGCTCG GACGACTTCTACTTGGTCGCATCCACAGACGTTCCCATGGTTGGGAGCGG TGGGGCTCCGTCAATAACCGTCGTGTCTCCAACAGCTGAATCTGTGGCTA TTTCTGGAGAGGAGTATACTGTGGAGGTGAGGCTGAAGCTGTTGACTAGT GTCTTGAGCTTATACGACTTTTTAGTGATTTTCTCGATCACAATTTCTCC AAATAGCGACATTTCAACCTGGAATAAGAAACGACGTAGTCGAAGCAGCT CTCGATCCGTATCGAGGATTTCCTACTTCAAGTGACGCACATCAAGAGAT GAGGCCATGATCTAGACGAAGATCGCGTTTGAGGGAGCCCTAACAAAAGA AGCTACGAATATTGACAGCCCCCCGCCTAAAACTATCAATGTGTTCCCAT TTCTAATACGGATGCCTGATTCGCATTGTGTTCAGTTTGACTACGACAAT GGGTTCGGCAACACGGTGGGACGGTTCAAGATTGATCTGTACACTGACGA GGGCGTCGGCGACTGCGGTGGCTGGGTCGGTTCTATCTGTGACAAGCCCG ACATCGGCTGCAAGGACTCGAGTGAGTTGTGTCAATCGTACAAAGTGCCG GATGAACTAATCTTATCGTGACATGGAATGGGTTCCATATGTCCGGTGCG TTCTTATGTTGGTGTGCTTATTAATTCTCTCTAATCGCGTTCGTGTTCCT CCTTTGTCATGACTACGTTGTACTTATTGGATCAGCTGGAGACTACAACA TCGTGATACCGCCAGTGGCTGAATCCGGTATGTACAAGATCCGTGTGGGC GTGTTCGGGGACGATTCTGTTTACGCTTGCTCTGAGGCGTTTGAGGTGTT ACCTACTGTTGGCGATGACATCTGGGCATAAGAAGAGTCAAATATCATGC AAGTGCACACATATACATGTTTAATGTCTACCGGCGATGGCAGTGGACGA GTGCAAGACGTACGCGTCACGGACGTATCTACATTCGGGTATTCTGCAGA GACACGAAGTCAGCACCACATACCAACACTCTTTTGGCGCCATCTCTTCT GTTGGGCATGTAGAGCTACACTAGACAGGAGGATTGATGTGTGCATATTA TTGATGTGCATGTTTTCGATGTGTGCATAATATTGATGTGAATGTTTTCG ATGCGTGCATATTATTGATGTACATGTTTGCGATGTGTGCATATTATTGA TGTACACGTTTGCGATGTGTGCATAATATTGATGTAAATGTTTTCGATGT GTGCATATTATTGATGTGCATGTTTCCGATGTGTGTTGATGTGTGAATGT TTCGATATGTGCATATTTTTGATGTCTATATCTTTGTGGATCTTTTTCAT GTGATGGTTTGTGTATGTTGTGTCATGATGTGTTGTGTAACGTGCGACAT CATTTTCGGTGTACACAATTGTGGGCTGAGGACCAACAATCGGTCGGGCA CGATTTTGTTCGTTGAGATCAGCCCTTGGGTTGGTTGGTATCGGACATTC CTTTCCCTAATGGGCCTGCCGAATCGGTTGTTTGTGTACATGAGTGGGTG TTGTGTCGGAGCATCTTAGGAAAAAATAGAGAGCGGTTACCCTTGGTTAG CCGAAGTGGTGTGTGATGGTGAATTTGCTTGATTGTGGTGGAGATGAATA CAATTGAGTGGAGAATATGGGCGAGCCATTTTGATCGTCGAAAGGAGGTT TCGATACTGCGATGGCCCCGGGGAGAAAATGACAGATATACTTGATAGGG TGAGATGTAGTGTTTCAGTGCCAGGTATGCTGATCAAGGATCGAGATCCC TGCGATTCATGATCATGATTGAGTACTGGCACGTGTGAAGCGACAGTAGA TTCGTGGCTATACGTATGCAGTTGGTTTGTTTCCTCGATCCGCGGAATTC TTCGGAAAGAGCAACGATAGACGCGATCACTAGCACTAGCGGGAAGTGCA CTTTATGTTGCTTGTGGTTAATCTGGAGGGCTCCGACGGGGAGATATGTT TACATGTATCGTGCAAGTTTTTGCCGTTTTTCATTCTGTTGGGAACAGCC TGTTGCGCGGTACATTTGGTGTGAGACTGCTAGCAATATATGATTCGCTG CCGATAAAATAATATGACTGAGCCCATAATGGGCGTTTGTACTATGCATT ATCTGTTCCCGATTTTTTTAGAAATGTCATTTTCGAAATGTAAACCCAAT CGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11209:3130..7034+

>mRNA_H-paniculata_contig11209.768.1 ID=mRNA_H-paniculata_contig11209.768.1|Name=mRNA_H-paniculata_contig11209.768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig11209:3130..7034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTTCTCTAGCATGGCGATTCTGACTGCAGTGGCGAGCATGATGGC
AACAGCGACAATTACCCAGGCGCTGCGTGTCACGATGCCGTCAGAGGGCA
TGACTGTGGTGTCTGGAAGATGGGCTTCTCTAGCATGGCGATTCTGACTG
CAGTGGCGAGCATGATGGCAACAGCGACAATTACCCAGGCGCTGCGTGTC
ACGATGCCGTCAGAGGGCATGACTGTGGTGTCTGGAAGCCCATACCCTGT
GGAGTGGACGGGCTCCTCACCAGACGAACGATTCGAAATCGATCTCACCT
ACTGTGGCTCCTACTCATATTGTTTCGATCCCATACCCTGTGGAGTGGAC
GGGCTCCTCACCAGACGAACGATTCGAAATCGATCTCACCTACTGTGGCT
CCTACTCATATTGTTTCGATGATGACTGTGGTTTCCTCCTGGAAAACTTG
TGCATGGAGGGAGCAGAGGGTTGCGCTTTGGACGCCAATGGTGGCTACCA
TGTTATGATGCCAGAGCCGTTGGATGGTATCTCCAGCAACGGCTACAGGG
TACGGATCGCAGAGGTCGGAGGCGGCTTAGACAGTGTCCGATGCTCGGAC
GACTTCTACTTGGTCGCATCCACAGACGTTCCCATGGTTGGGAGCGGTGG
GGCTCCGTCAATAACCGTCGTGTCTCCAACAGCTGAATCTGTGGCTATTT
CTGGAGAGGAGTATACTGTGGAGGATGACTGTGGTTTCCTCCTGGAAAAC
TTGTGCATGGAGGGAGCAGAGGGTTGCGCTTTGGACGCCAATGGTGGCTA
CCATGTTATGATGCCAGAGCCGTTGGATGGTATCTCCAGCAACGGCTACA
GGGTACGGATCGCAGAGGTCGGAGGCGGCTTAGACAGTGTCCGATGCTCG
GACGACTTCTACTTGGTCGCATCCACAGACGTTCCCATGGTTGGGAGCGG
TGGGGCTCCGTCAATAACCGTCGTGTCTCCAACAGCTGAATCTGTGGCTA
TTTCTGGAGAGGAGTATACTGTGGAGTTTGACTACGACAATGGGTTCGGC
AACACGGTGGGACGGTTCAAGATTGATCTGTACACTGACGAGGGCGTCGG
CGACTGCGGTGGCTGGGTCGGTTCTATCTGTGACAAGCCCGACATCGGCT
GCAAGGACTCGATTTGACTACGACAATGGGTTCGGCAACACGGTGGGACG
GTTCAAGATTGATCTGTACACTGACGAGGGCGTCGGCGACTGCGGTGGCT
GGGTCGGTTCTATCTGTGACAAGCCCGACATCGGCTGCAAGGACTCGACT
GGAGACTACAACATCGTGATACCGCCAGTGGCTGAATCCGGTATGTACAA
GATCCGTGTGGGCGTGTTCGGGGACGATTCTGTTTACGCTTGCTCTGAGG
CGTTTGAGGTGTTACCTACTGTTGGCGATGACATCTGGGCATAACTGGAG
ACTACAACATCGTGATACCGCCAGTGGCTGAATCCGGTATGTACAAGATC
CGTGTGGGCGTGTTCGGGGACGATTCTGTTTACGCTTGCTCTGAGGCGTT
TGAGGTGTTACCTACTGTTGGCGATGACATCTGGGCATAA
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