mRNA_H-paniculata_contig11209.768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 310 bits (794), Expect = 1.090e-96 Identity = 158/264 (59.85%), Postives = 195/264 (73.86%), Query Frame = 3 Query: 117 SSMAILTAVASMMATATIT--QALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDD-DCGFLLENLCMEG-AEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT---DEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPTVGD 887 SS+A L A+A ++ TIT +AL+V P+ TVVSG PY V W G+S D+RFEIDL YCGSYSYCF++ +CGF L N+C EG GC A+ V PEPL G S+ GYR+RIAEVG D+ RCSDDFYL++S D P VG G P+I VV+PTA+++AI+GE YTVEFDYDNGFG +GRFKIDLY ++G GDCG WV S+CDKPD+GC DS GDYN+VIP +E GMYKIRVG+FGDD++YACS +FEV+ D Sbjct: 3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 301 bits (770), Expect = 2.610e-93 Identity = 149/257 (57.98%), Postives = 189/257 (73.54%), Query Frame = 3 Query: 117 SSMAILTAVASMMA-TATITQALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDD--DCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPT 878 SS+A LTA+A ++ T T T+ALRV P+ +V SG PY V W G+ D+RFE+DL YCGSYS+CF + DCGF + N+C E + C + + V PEP+ G S+NGYRVRI+EVG D+ RCS+DFYLVAS DV G G P++ VV+P A ++A++GE YTVEFDYDNGFG +GRFKIDLY EG GDCG WV S+CDKPD+GC+DS GDY++VIP +E GMYKIRVG+FGDDS+YACS +FE+ T Sbjct: 3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTT 257
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 283 bits (724), Expect = 9.200e-87 Identity = 144/256 (56.25%), Postives = 186/256 (72.66%), Query Frame = 3 Query: 117 SSMAILTAVASMMATA-TITQALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFD--DDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLP 875 SS+A + A+ M+ T T+ALRV P+ TVVS PY V W G+SPD+RFEIDL YCGSYS+CF+ D+CGF + NLC EG + C + V +PEP+DG S++GYRVRI +VG ++ RCSD+FYL++S D P++ VV+P++ ++A++G YTVEFDYDNGFG GRFKIDLY EG GDCG WV S+CDKPD+GC D+ GDY+IVIP +E GMYKIRVG+FGDDSV+ACS +FEV+P Sbjct: 3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 256 bits (654), Expect = 3.070e-76 Identity = 127/232 (54.74%), Postives = 162/232 (69.83%), Query Frame = 3 Query: 177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 872 AL V P+EG VV+ Y VEWTG+ + R+EIDL YCGS C +D+CG + LC G +GC D G Y ++MPEP+ G S +GY+VR+A+V DS CSD+FYL+A + P G G P +TV SP++ A +GEEYTVEFDYDNG G++VGRF IDLY+ G GDCG ++ ++CDKP IGCKDS GDY++ IP AE+GMY IRVG F DDSVY CS+ FE+L Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSM--CMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 250 bits (639), Expect = 2.760e-74 Identity = 125/235 (53.19%), Postives = 159/235 (67.66%), Query Frame = 3 Query: 168 ITQALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 872 + AL V P+ G VVS Y VEW+G+ ++RFEIDL YC S C +D+CG + LC G +GC D G Y ++MPEP+ G S +GY+VR+A+V DS CSD+FYL+A D P G P +TV SP+ A +GEEYTVEFDYDNG G++VGRF IDLY G GDCG ++ ++CDKP IGCKDS GDY++ IP AE+GMY IRVG F D+SVY CS+ FE+L Sbjct: 17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSM--CMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 244 bits (623), Expect = 7.940e-72 Identity = 125/238 (52.52%), Postives = 164/238 (68.91%), Query Frame = 3 Query: 177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPTVGDD 890 AL+V+ PS+G+TV++ Y VEWTG+S D RFEIDL YCGS C +DDCG + LC G +GC D G Y ++MPEP+ G S +GY+VR+ ++ D+ CSD+FYL+AS++ P VG P++ V SP + +A + EYTVEFDYDNG G++V RF IDLY +G GDCG +V SICDKP IGCKDS GDY++ IP ++G YKIRV F DDS+Y+CS F + GDD Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDD 250
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 232 bits (592), Expect = 1.780e-67 Identity = 126/238 (52.94%), Postives = 154/238 (64.71%), Query Frame = 3 Query: 177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPTVGDD 890 AL V PS + VV+ Y VEWTG+ RFEIDL +CGS C +D CG + LC G EGC D G Y ++MPEP+ G S++GY+VR+ +V DS+ CSD FYL+AS D P GS +TV SP A +GEEYTVEFDYDNG G+ V RF IDLY +G GDCG +V SICDKP IGCKDS GDY++ IP E+G YKIRVG F D+ +Y CS F ++ GDD Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSM--CMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG--GDD 249
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 231 bits (590), Expect = 3.060e-67 Identity = 124/232 (53.45%), Postives = 157/232 (67.67%), Query Frame = 3 Query: 177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 872 AL V P+ G VV+ S Y VEWTG++ R++IDL YCGS C +D+CG + LC G +GC D G Y V+MPEP+DG SS GY+V + + D CS DF L+AST+ P GA ++V SP+ A++G EYTVEFDYDNG G++V RF IDLY+ G GDCG +V +ICDKP IGCKDS GDY++VIP ESGMY IRVGVF DD VY CS++FE++ Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 217 bits (553), Expect = 7.220e-62 Identity = 116/231 (50.22%), Postives = 152/231 (65.80%), Query Frame = 3 Query: 177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDSTGDYNIVIPPVAESGMYKIRVGVFGDDSVYACSEAFEV 869 AL V P G++V++ Y VEWTG++ RFEIDL YC S+ C DD CG + LC GA+GC D+ G Y ++MPEP+ G SS GY+V + D + CSDDF L+AS D P G G S+TV SP+ A++GE YTVE+DY+NGFG++ RF +DLY G GDCG +V ++CD+P IGC DS GDY++ IP +GMY IRVGVF D+ +Y CS+ FEV Sbjct: 19 ALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSF--CMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 205 bits (521), Expect = 2.000e-57 Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 3 Query: 177 ALRVTMPSEGMTVVSGSPYPVEWTGSSPDERFEIDLTYCGSYSYCFDDDCGFLLENLCMEGAEGCALDANGGYHVMMPEPLDGISSNGYRVRIAEVGGGLDSVRCSDDFYLVASTDVPMVGSGGAPSITVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTDEGVGDCGGWVGSICDKPDIGCKDS 755 AL+V+ PS+G+TV++ Y VEWTG+S D RFEIDL YCGS C +DDCG + LC G +GC D G Y ++MPEP+ G S +GY+VR+ ++ D+ CSD+FYL+AS++ P VG P++ V SP + +A + EYTVEFDYDNG G+ V RF IDLY +G GDCG +V SICDKP IGCKDS Sbjct: 20 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11209.768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11209.768.1 >prot_H-paniculata_contig11209.768.1 ID=prot_H-paniculata_contig11209.768.1|Name=mRNA_H-paniculata_contig11209.768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp MGFSSMAILTAVASMMATATITQALRVTMPSEGMTVVSGSPYPVEWTGSSback to top mRNA from alignment at H-paniculata_contig11209:3130..7034+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11209.768.1 ID=mRNA_H-paniculata_contig11209.768.1|Name=mRNA_H-paniculata_contig11209.768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3905bp|location=Sequence derived from alignment at H-paniculata_contig11209:3130..7034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11209:3130..7034+ >mRNA_H-paniculata_contig11209.768.1 ID=mRNA_H-paniculata_contig11209.768.1|Name=mRNA_H-paniculata_contig11209.768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig11209:3130..7034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |