mRNA_H-paniculata_contig28100.7674.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28100.7674.1
Unique NamemRNA_H-paniculata_contig28100.7674.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28100.7674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28100contigH-paniculata_contig28100:70..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.8277738-CDS-H-paniculata_contig28100:69..4981622929852.8277738-CDS-H-paniculata_contig28100:69..498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28100 70..498 +
1691481040.1217015-CDS-H-paniculata_contig28100:69..4981691481040.1217015-CDS-H-paniculata_contig28100:69..498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28100 70..498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.8405862-UTR-H-paniculata_contig28100:498..6171622929852.8405862-UTR-H-paniculata_contig28100:498..617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28100 499..617 +
1691481040.1380908-UTR-H-paniculata_contig28100:498..6171691481040.1380908-UTR-H-paniculata_contig28100:498..617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28100 499..617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28100.7674.1prot_H-paniculata_contig28100.7674.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28100 70..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28100.7674.1

>prot_H-paniculata_contig28100.7674.1 ID=prot_H-paniculata_contig28100.7674.1|Name=mRNA_H-paniculata_contig28100.7674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
PHGLPPLPTQRPARVSTSVLRTAAEVTPPATRAALTLGYSYQSRSCARAL
GYYLPRHPVLPPNQYRCCYPTPRGEKFQLLPRSRDRRRRRCCYRRDAVLL
TPDPPSAARISTPDRPPRLSQMVSLLLSSATGSVVPFRGYIH*
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mRNA from alignment at H-paniculata_contig28100:70..617+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28100.7674.1 ID=mRNA_H-paniculata_contig28100.7674.1|Name=mRNA_H-paniculata_contig28100.7674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at H-paniculata_contig28100:70..617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCACGGCCTACCGCCGCTGCCAACACAACGGCCGGCGAGGGTATCGAC
TTCCGTCCTTCGGACAGCGGCGGAGGTGACTCCGCCGGCGACGAGGGCGG
CGCTGACGCTTGGATACTCCTACCAATCCCGTTCATGTGCTCGTGCCCTG
GGATACTACCTCCCCCGCCACCCAGTCCTGCCGCCGAACCAATACCGCTG
CTGTTACCCAACACCCCGCGGGGAGAAATTCCAGCTGCTGCCCAGGAGCC
GTGACCGCCGCCGCCGCCGCTGCTGCTACCGCCGGGATGCTGTACTTTTG
ACGCCCGACCCTCCATCCGCTGCGCGGATTTCGACCCCCGATCGACCCCC
CCGATTGAGCCAGATGGTAAGCCTCCTGCTGTCCTCGGCGACTGGGTCGG
TTGTGCCATTCCGAGGATATATTCACTAGCCGCATCTTCCTGGCCTTGGT
GTCTACTATGGTTATTGCTTTTGCTGTTGGTGGCGGTGATGCTGCTACTA
TGGTTAGTGCTATGGTTAGTATGAGACGCTCGCTTTTCGGCATCTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig28100:70..617+

>mRNA_H-paniculata_contig28100.7674.1 ID=mRNA_H-paniculata_contig28100.7674.1|Name=mRNA_H-paniculata_contig28100.7674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig28100:70..617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCACGGCCTACCGCCGCTGCCAACACAACGGCCGGCGAGGGTATCGAC
TTCCGTCCTTCGGACAGCGGCGGAGGTGACTCCGCCGGCGACGAGGGCGG
CGCTGACGCTTGGATACTCCTACCAATCCCGTTCATGTGCTCGTGCCCTG
GGATACTACCTCCCCCGCCACCCAGTCCTGCCGCCGAACCAATACCGCTG
CTGTTACCCAACACCCCGCGGGGAGAAATTCCAGCTGCTGCCCAGGAGCC
GTGACCGCCGCCGCCGCCGCTGCTGCTACCGCCGGGATGCTGTACTTTTG
ACGCCCGACCCTCCATCCGCTGCGCGGATTTCGACCCCCGATCGACCCCC
CCGATTGAGCCAGATGGTAAGCCTCCTGCTGTCCTCGGCGACTGGGTCGG
TTGTGCCATTCCGAGGATATATTCACTAGCCGCACGGCCTACCGCCGCTG
CCAACACAACGGCCGGCGAGGGTATCGACTTCCGTCCTTCGGACAGCGGC
GGAGGTGACTCCGCCGGCGACGAGGGCGGCGCTGACGCTTGGATACTCCT
ACCAATCCCGTTCATGTGCTCGTGCCCTGGGATACTACCTCCCCCGCCAC
CCAGTCCTGCCGCCGAACCAATACCGCTGCTGTTACCCAACACCCCGCGG
GGAGAAATTCCAGCTGCTGCCCAGGAGCCGTGACCGCCGCCGCCGCCGCT
GCTGCTACCGCCGGGATGCTGTACTTTTGACGCCCGACCCTCCATCCGCT
GCGCGGATTTCGACCCCCGATCGACCCCCCCGATTGAGCCAGATGGTAAG
CCTCCTGCTGTCCTCGGCGACTGGGTCGGTTGTGCCATTCCGAGGATATA
TTCACTAG
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